LOCUS AP013888 8116 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1B-MedDCM-OCT-S26-C214, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013888
VERSION AP013888.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 8116)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..8116
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1B-MedDCM-OCT-S26-C214"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(270..521)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22731.1"
/transl_table=11
/translation="MAIRHGNKQYFQILLDPNRAELVQEEALKKQQRATAWIREAVYA
ELKRVTSASVYSEAEAKDLARWRQSVRSQVEGRTKQNDD"
CDS complement(546..761)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22732.1"
/transl_table=11
/translation="MGRWMPRTGRQLVMERLNKAIQAATTGDLQRAAMFLERAREVRA
GCTNQRAQARRAQATAWKKKVDSSITW"
CDS complement(837..2675)
/codon_start=1
/product="DNA polymerase"
/protein_id="BAR22733.1"
/transl_table=11
/translation="MSPQVFQGIEHLGKLATSQSLCFDTETLQLQPERGKLRLLQLGA
RDRDTIVLIDCFQLDKGDWADLRWFFSTPTRFWLAHNAVFDLGWLQEHNIYPAGWVRC
SMLASRLLTNGLPNSKHGLDSVVKRYLKDENGKPKELSKEQQRSDWSGDLSQEQLEYA
ANDVAALMELDPILEHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKID
YEHDIKGLAKDFVLHLDAAMPEEHKLPRDEDGSFNLRPKDQGKLRDGTKKYAGFNINS
PKQLVEKLTVVLGAAPRDANGKPSASRQALRSYAADHEVLQIYLEWKRCEKRRQMIES
IQEKMDGTGFVRASYMQLGAESGRMSCIKPNNQQIPRDKQFRSCVEAPEGWLLVDADF
GQMELRLAAAVADDERMIAAFQAGEDPHTVTAEAIGCDRQTAKSANFGLLYGSGATGL
RNYAGGMGITMTQERAADIRNEWLGVFQGVAKWQRDNAKEADETQDDKWAATRVPISG
MRRYLQGDMNRLTVRCNTPIQGAGAAILKCALGNLWPKVKEAGEDTVRIAAAVHDEIL
LLVRENAAQEWAATLKQVMEDAEAKWLGEIPALAEVSVGKTWSETH"
CDS complement(2710..2973)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22734.1"
/transl_table=11
/translation="MGHQVQFQYCKVRARAGVNALALVRFTSYDDEAKAVAVEQVTYQ
DDQVGHRDFEYQVAAALDCGIDVAVMTAYDLDYFPLVEALVSS"
CDS complement(3035..3289)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22735.1"
/transl_table=11
/translation="MKRIEITVDDADADRLKLEADQLGISRSDLLRERIKCTPLKTDK
RLTPTDFYDLVERTRRRAGQGVDQRQVEGIVAFVFSELAG"
CDS complement(3292..3477)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22736.1"
/transl_table=11
/translation="MTEKQIQATVRTAHHYGGSFLSKVAEAAMSADPRNRTRVLDAFP
EIVSKYGPGSAFYNEYL"
CDS complement(3533..5944)
/codon_start=1
/product="bifunctional DNA primase/polymerase"
/protein_id="BAR22737.1"
/transl_table=11
/translation="MNLVDFVRSLPKHWATAPIYAKGAVMPNGKKAEGKSPLGRAAHN
ELSPELTAQYIENAPETFAAVGVYSGTRSGGLVIFDVDANLGAIEEKWGKDLENAPRI
TSPKKNAAKFLFVVPDKDRLIVSDLSHAAAGHEGWEVLWGRQGLLFGAYKDEGEYAFT
GDVNKIPTAPEWLLERMREQYRKLHERTDNRKLRDSRYSNRSREEKIEIARSCLSVIE
PRGANSEQFWWEIGAMIHSELPNEDGLKLWEEWSRRDNEYADDWKDGHNPCAERWENG
FRGGGLGFGSLIRQADLVDPQKTRFQRDGIARLVEEIEALPIKYRPDLLSGEEVISRG
LELEDSIENPALLDQAKTQLAQEAGRHKEGAAAIDRMLDAHLTFERNKEFRPRAVSEL
DDASFDYLIPGLLPKPWLLLIHADGGTGKSAMCQTLCKHISQGRSFNVHGGLVNVPRG
RCLWLNGDQSERIVRRQFDLIGVTAGVDVVGEWDMSWYSRFKKLQGPKEAPNYDLVVI
DSLDGCNDSNPYEENRREYALPLKKLARRNGEDFGACTIIVIHHNNRNGSFRGTSAIR
AAVDETWNMQKLEGKQLAELGLPDNTRIVTVEKSRDDREGQEMAFALLSDYTYQIEPV
PEKDSKVNGPTRQMLDMLKEMRRTRIPWTVQDFVDHDLLGGVHKKRAIKYGLDKLEGQ
KLIERCATPASWKGKGRPPAFYEAVGTDVPGKFCSRAREKTVKPPVKSQTPSPGTDLN
NKADCQKSEIVKSPDEGLLTKPELLTKPIVGKNPSTATGQRFNADNQRHRGFDSDADD
WGMWD"
CDS 6094..6678
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22738.1"
/transl_table=11
/translation="MGFISTKNKSAISAGSGGGYLNPSKIQSGGSVRFALLQDQPLEF
FECWGESSEGGVKPFRFSDDPSPEDIQEEMGPEFERRMNREGTAPEKVKFAIAVPVYN
YEASSVQIMQLSQKSLQNELDDISQMEDYANLLEWDFVMGKEGNGLETRYSLRPVPRK
KGSQDSIESAWTEARAAGFDIGRLLTGENPFKAE"
CDS 6838..7602
/codon_start=1
/product="KilA-N domain-containing protein"
/protein_id="BAR22739.1"
/transl_table=11
/translation="MTAIKPMYGQLQTRSWNGTAIPRRTSDGYINATAMAKASGKQWN
NYFQTDRTTTYMEALSRNLGIQVTSLYTAKPGEGTWIHERLAVDFARWISADFAVWMD
AWFLEEVKGLSQVQNTQPVLAPTVLDTVDRSINLLERLGGVDERAQMLLRDVVLNTAM
KSAGGTAPALEPAKELTLSEKLIELGCPSHKATPLAAKIGKEIKGLYRRKNGREPKSQ
DQLVNGRRCSVALYERDFLNWLDSDFQAFIKEFCAS"
CDS 7631..7792
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22740.1"
/transl_table=11
/translation="MPEVVTTVLDDGCISISVGDFTGVVSSMHLIEPKTHQLQSAWLA
REAELANAC"
BASE COUNT 1812 a 2384 c 2044 g 1876 t
ORIGIN
1 gtaatacaca tgcagcagga tggtgcgtac catgcagaaa agtgcgcctt acaggagact
61 gacagtctgc cgtagctaaa aagctactgg cacaatttct aaaggtctac gtatcttact
121 cagaatagtt tgagcttggt taaaactgtt gtaactgcaa gcatctgagg cggttatagt
181 ccaaaaagtg tcgccagatt tttcataata agccgataaa aacatggact cagaatcggc
241 cactttgagt gcaaagcgca taaataaaat cagtcgtcgt tttgtttggt ccgaccctca
301 acctggctgc gaacggactg ccgccaccgc gccaggtctt tagcttcggc ctcgctatag
361 acactagccg aagtaacccg cttcaactct gcgtatacag cttctcttat ccaagctgtt
421 gcgcgctgtt gcttcttcaa cgcttcctct tgaactagct cagcccggtt cgggtcaagc
481 agtatttgaa agtactgttt gtttccgtgg cgaatagcca tagttttcac tgtgctacaa
541 gcacgttacc atgtaataga cgaatcgacc ttctttttcc aagcagtggc ttgagcacgg
601 cgagcttggg cgcgctgatt cgtacagccc gcccttacct cgcgcgcccg ctctaagaac
661 atcgccgccc gttgcaaatc acccgtcgtt gctgcctgga tcgccttgtt taaacgttcc
721 atcacgagtt gcctgcctgt acgcggcatc catcgcccca cgaagatcct ggtggtacgt
781 tacccgtcct ccacaggaac agaaccaccc ctcatctgtg cagtagacgt tgaccatcag
841 tgagtctcgc tccaggtttt acctacagac acctcagcca gcgcaggaat ctctccaagc
901 cacttggcct cggcatcctc catcacctgt tttaaggtcg ctgcccactc ctgagctgca
961 ttttccctaa caagcaacag aatttcgtca tgcaccgcag cagcaatacg cacggtgtct
1021 tcgcccgcct ccttgacctt cggccacaga ttccccaaag cgcacttaag gatggcagca
1081 ccagctccct gtattggggt gttacagcga acagtcagcc ggttcatgtc gccttgcagg
1141 taacgcctca tccctgagat cggaaccctg gttgccgccc atttatcgtc ctgcgtttca
1201 tcagcttctt ttgcgttgtc ccgctgccac ttcgctactc cctggaacac accaagccat
1261 tcatttctaa tatcagcggc ccgttcctgg gtcatggtga tgcccatgcc acctgcgtaa
1321 ttccgcaaac ctgtagcgcc agacccatac agcagaccga agtttgctga tttcgcggtc
1381 tgacggtcac agccgatagc ttccgcagtg acagtgtgcg gatcctcccc ggcctggaac
1441 gcagcaatca tccgctcatc atctgccacc gctgcagcaa gtcgcagctc catctggccg
1501 aaatctgcgt caactagcag ccaaccttca ggcgcttcga cacaactgcg gaactgcttg
1561 tcacgcggaa tctgctgatt gttgggcttg atgcaggaca tgcgccctga ctccgccccc
1621 aactgcatgt agctggcacg cacaaagcca gtgccgtcca tcttttcttg aatcgactcg
1681 atcatctgac ggcgtttttc acaccttttc cactccaggt aaatctggag gacttcgtga
1741 tctgcggcgt aagaacgcag tgcctgcctg gatgcactgg gcttgccgtt ggcatcacgc
1801 ggggcagcgc caagtaccac agtaagtttt tccacaagct gcttggggct attgatattg
1861 aagcctgcgt actttttggt gccgtcccga agcttgcctt gatccttagg tcgcagatta
1921 aaactgccat cctcatcgcg cggcaacttg tgttcttcag gcatcgcagc atcaagatgt
1981 aacacaaagt ctttggccaa ccccttgatg tcgtgctcgt aatcgatctt gcgttgctgc
2041 aagttctcag cgttccaggg cagacctgtg cgccacatct gcgccatcgc gggtaaagcg
2101 cggcactcaa gcttgaaggc tggtccgagc ctgtcccggc taatgcggtg ctccaagatg
2161 ggatctagct ccatcagagc cgcaacatca ttagctgcgt actccagctg ctcttgactg
2221 aggtcgccgc tccaatcaga acgctgctgt tctttcgaca gctctttggg ctttccgttt
2281 tcgtctttga gatagcgctt tacaacgctg tcgagaccgt gcttcgagtt aggcaggccg
2341 tttgtgagaa gtcggctggc cagcatggag caacggaccc acccagccgg atagatgttg
2401 tgttcctgga gccaaccaag atcgaagaca gcgttatggg ccagccagaa tcgggttgga
2461 gtgctgaaga accagcggag atcagcccag tcgcccttgt caagttgaaa gcagtcaata
2521 aggacaatag tgtcgcggtc tcgggcacct aattgcaaga gccgcaactt gccacgctca
2581 ggctgcagct ggagcgtttc tgtgtcaaag cagagggact gagaggtggc gagcttgcct
2641 aagtgctcaa tgccctgaaa aacttgggga gacatgggtg gtgtcgtatg actcccttaa
2701 tgtagcacat caagaagata ccagggcttc taccagcgga aaatagtcca aatcgtatgc
2761 cgtcatcacg gctacatcaa tcccgcaatc gagggcagca gccacttgat attcaaagtc
2821 tcgatgccct acctgatcgt cctggtacgt cacttgctca acagctacag ccttagcctc
2881 gtcgtcgtag ctagtgaagc gcaccagggc tagagcattt acacccgccc gagccctgac
2941 cttgcagtat tggaactgaa cttggtgtcc catgcgggct actcgcttaa agggagtatg
3001 gccccgcttg cgtatgagca gacgaaccag ctgcctagcc agccagttca ctgaaaacaa
3061 acgcaacgat cccttcaacc tgacgctggt ccaccccctg gccagctctg cgcctagtgc
3121 gctccaccaa atcgtaaaaa tcagtgggcg ttaaacgctt gtccgtttta aggggagtgc
3181 acttaattcg ctcgcggagc aagtcagacc gtgaaatgcc caactggtca gcttcaagct
3241 tcagacgatc cgcgtcagcg tcgtccaccg tgatttcaat ccttttcatg ctcaaagata
3301 ttcgttgtaa aaagcactgc ctggaccgta cttagacacg atttctggga aagcgtctaa
3361 gacgcgggtt cggttgcgtg ggtccgcgct catggcagct tcagcaactt tgctgagaaa
3421 cgacccaccg taatggtgag ccgttctaac ggtggcttga atttgttttt cggtcacagc
3481 ccggtaaatc ctgtgcacag agtagcacat taacaagctt ttgcctagta agtcagtccc
3541 acatacccca atcatccgcg tcagagtcga aacccctatg tctctgatta tccgcgttaa
3601 aacgctgacc cgttgcggtg gaagggttct taccaacaat aggctttgtt aaaagttctg
3661 gttttgttaa aagtccttcg tccggacttt tgacaatttc ggacttttga caatccgctt
3721 tgttgtttaa atccgttcca ggggaaggag tttgactttt aacagggggt ttcacggtct
3781 tttcacgcgc gcgagagcag aacttacctg gaacgtctgt accaaccgcc tcgtagaacg
3841 caggaggccg ccctttaccc ttccaactcg ctggggtagc acaacgttca atgagcttct
3901 gcccctccag cttgtccaag ccgtacttaa tggcgcgctt cttatgtacg cctcccagca
3961 ggtcgtgatc cacaaaatcc tggaccgtcc aaggtatgcg cgtacgccgc atttccttga
4021 gcatgtccag catctgccga gttggtccgt tgaccttgct gtctttctcc ggcaccggct
4081 cgatctggta cgtgtagtcc gacagcagcg caaaggccat ctcttgtcct tcgcggtcat
4141 cgcgtgactt ttcaacagtc acgatcctgg tgttgtcagg caggcccaac tcagccagct
4201 gcttgccctc cagcttctgc atgttccacg tctcgtctac ggccgctctg atggcgctag
4261 tgccacggaa actgccgttc ctgttgttgt ggtggatcac gatgatggtg caggccccga
4321 aatcctcacc attgcgccgt gcaagcttct tcaagggcag cgcgtactcc ctgcggttct
4381 cctcgtaagg gttggagtca ttgcagccgt ccaggctgtc aatcaccacg aggtcatagt
4441 tcggcgcttc cttcggaccc tggagcttct tgaagcggct gtaccaggac atgtcccact
4501 caccgacaac atcaactcca gcggtaacac cgatcagatc aaactgacgc cgcacaatcc
4561 gctcgctctg gtctccgttc aaccaaaggc agcggcccct gggcacgttg accaaaccgc
4621 catgaacgtt gaatgaccgc ccctggctga tgtgcttaca cagcgtctga cacattgccg
4681 acttgcctgt gccgccgtcc gcgtgaatca gcagcaacca aggcttcggc agcaagcccg
4741 gaatcaaata atcgaacgag gcatcatcaa gctcgctcac ggccctggga cgaaactctt
4801 tgttgcgctc aaacgtgagg tgagcatcaa gcatccggtc aatggccgcc gccccttctt
4861 tatgccgccc agcctcttgg gccagctgag ttttggcctg gtcaagcagc gccgggtttt
4921 cgatactgtc ctctagctcc agcccccgcg agatgacttc ctcaccgctg aggaggtccg
4981 gcctgtactt aatcgggagc gcctcgatct cttccaccag tcgtgcaata ccgtcccttt
5041 gaaatcgggt cttctgtggg tccaccagat cggcctggcg gatcagcgac ccaaatccaa
5101 ggccgccccc acgaaacccg ttctcccagc gctcagcaca cgggttgtga ccatccttcc
5161 aatcgtcggc gtactcgtta tcgcggcggc tccactcttc ccacagcttc aagccgtcct
5221 cgttaggcag ctcgctgtga atcatcgccc cgatttccca ccagaactgc tcactgttgg
5281 caccacgggg ctcgatgaca ctcagacaac tccgagcaat ctcaatcttc tcctccctgg
5341 aacggttgga gtaacggcta tcgcgaagtt tgcggttatc agttcgttcg tgcagctttc
5401 tgtactgctc gcgcatccgt tccaaaagcc attcaggagc ggtggggatt ttatttacat
5461 cgccagtaaa ggcgtactcc ccctcatctt tgtaagcacc aaaaagcaga ccttgcctgc
5521 cccagagcac ctcccaacct tcatgcccag cagcagcgtg gctgagatca gaaacaatca
5581 gtcgatcctt atcaggaaca acaaacagaa acttggccgc attctttttc ggtgaggtga
5641 tccgtggagc gttttcgaga tcctttcccc acttctcttc gatggcccca aggttggcgt
5701 ccacgtcaaa tatgacgagc ccaccagagc gagtgccgct gtaaacaccg acagccgcaa
5761 aagtctccgg agcgttttcg atgtactgag ccgtcagctc aggggatagc tcattgtgcg
5821 cggcacgccc aagcggggac ttgccttcag cttttttgcc gttaggcatg acagcgccct
5881 tggcgtagat cggcgcagtg gcccaatgct tgggcaggct gcgaacgaaa tcaacgagat
5941 tcatttgcta cagtgtggtc gtggaatgtt tgactcatac ccctgggtgc ttcaccggct
6001 cccgggggtt tttccattct atagcagttg caaaccccgc acgctttgct acattgatga
6061 ggcaccgggc atcgcgccta cagcaaagga cccatgggct tcatctcaac caagaacaag
6121 tcagccatta gcgccggttc cggcggcggc tacctcaacc cctccaaaat ccagagcggc
6181 ggcagcgtcc gcttcgccct cctgcaagac caacccctcg aattcttcga gtgctggggc
6241 gagtcatctg aaggcggcgt aaagcccttc cgtttcagcg acgatcccag ccctgaggac
6301 attcaggaag aaatgggtcc cgagtttgag cgccgcatga accgcgaggg caccgcaccc
6361 gagaaggtaa agttcgccat cgctgtgccg gtctacaact acgaagccag cagcgtccag
6421 atcatgcagc tctctcaaaa gagcttgcag aacgaactgg acgacatcag ccagatggag
6481 gactacgcca acctgttgga gtgggacttc gtgatgggta aggaaggcaa cggcttggaa
6541 actcgttaca gcctgcgccc cgtgccacgt aagaaaggca gccaagacag catcgaatct
6601 gcctggaccg aagcacgcgc cgctggcttc gacattggcc gcctgctgac cggcgaaaac
6661 ccattcaaag ccgagtaaca caaaccggct actgactcag gggtgcacca tgtgtgtacc
6721 ccttttttat tacttacttc cggcatattt cggcatattc ctgcatataa ccttggggca
6781 ttagatcttg gtaagaatgt catacaagct aaatctctgt gatagaggta tagtttgatg
6841 accgccataa agccgatgta cggacagctt caaacccgct cctggaacgg aaccgcaatc
6901 ccccgccgca cctctgatgg ctacataaac gcgactgcta tggccaaagc cagcggtaag
6961 cagtggaata actactttca aaccgatcgc actaccacct acatggaggc tttgtcaaga
7021 aacctgggaa tccaggtaac ttccctttac accgccaagc ctggagaggg gacgtggatt
7081 cacgaacgct tggcggtgga ttttgctcgt tggattagtg ctgattttgc ggtgtggatg
7141 gacgcctggt ttttggagga ggtgaagggc ctatctcaag tgcaaaacac tcagcctgtt
7201 ctggctccca cggtgctgga taccgttgac cgcagcatca atttgctgga gcgtcttggc
7261 ggagtagacg agcgggctca gatgttgctg cgtgatgtcg tgctaaacac tgcgatgaaa
7321 tcagcgggcg gcactgctcc cgcacttgaa cccgcaaagg aactaacgct ttcagaaaag
7381 ctgattgagt tgggctgccc ttcgcacaaa gcaaccccat tagccgcaaa aattggcaag
7441 gaaattaagg ggctgtaccg aagaaagaac ggtagggaac ctaaaagcca agatcagcta
7501 gtcaatggcc gtcgttgttc tgttgcgctt tatgagcggg acttcttgaa ctggcttgac
7561 tccgattttc aagcgtttat taaagagttc tgcgcctcgt aaaaacatga gtgaccacct
7621 ggaacgggcc atgcccgaag tagtcacaac agttctcgat gatggctgta tttccatttc
7681 agtgggagac ttcactggag tggtcagttc aatgcaccta atcgagccca aaacccatca
7741 actacagagt gcatggctgg cccgtgaagc tgagttagcc aatgcctgct gatacacaga
7801 acgccctcgc cggactacgc cgctggtccc tggtccgtga tgactctggc ccccaccgcg
7861 tgtaccgaga cgagtccggc gtgtcttacg cctcagtgac ccacatcctc aaagaaacct
7921 ctccgcaatg gcagaaagat gcacttgatc gatggattca aaagccaggc tctgccctgg
7981 agcgtgacat tgcctgccag cgcgggactc ttgctcacga tcatgcggag tacgtgctca
8041 agacagcagc gaaactcgcg cgtaatagcg ctaacaagcg aggaagctgg aggactggag
8101 atgacggcct ggaacg
//