LOCUS AP013884 5207 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1A-MedDCM-OCT-S29-C227, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013884
VERSION AP013884.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 5207)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5207
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1A-MedDCM-OCT-S29-C227"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(165..356)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22680.1"
/transl_table=11
/translation="MKLTQFTDHELALLADALYWKMNTQLKAGLGDSPRFKTLQELQD
RILSYLQIVDYDEPRKDFK"
CDS complement(353..568)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22681.1"
/transl_table=11
/translation="MTYFPNRLVQIAPADELWGPVTRSTRASSSGRMIKCPRCGAVHR
VYHFSWSALQCISCDTMVDKFDWSRRV"
CDS complement(565..705)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22682.1"
/transl_table=11
/translation="MNHDYDPADDLPFYTEEELEELAIEQEQLDWERSIPTPAERNRN
LR"
CDS complement(717..1070)
/codon_start=1
/product="putative DNA binding protein"
/protein_id="BAR22683.1"
/transl_table=11
/translation="MKRTTQELDAQHELAKRLLDMGLKKAHVAATLQRKHGVSRATAY
RDVDTADIQRASEDPKLEAEPTPEIDYTDRDALMRMTLQLLTDAFQAGNVQDYARLVR
EYERLARMGGLSHNT"
CDS complement(1131..1718)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22684.1"
/transl_table=11
/translation="MTQELMRRIDALDGCQGHWVLLEDTEPSRIWWEQSYKDLFQRCI
DNGWRELSLAFVPSWFGYSDYGNTGLVGLSNFRTFLDSDDPHDAIHEIGYGHNGCGIA
VDIRFITDEMIESIQAVEGYPLLSDDDHSELEWEGVSKYWEAESTSDRVNMLQRHGLC
VFAARHDDTPWREGFDCIREDITSYLNEYPTAALA"
CDS complement(1718..2032)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22685.1"
/transl_table=11
/translation="MKAQSLDCDAARELELYATNVEIWYAPVIKNLSKHYKRGNFSLD
LAIHSIERYCLTPAAKQYHREFGSMTSKWNETFPKFVRLHVAEQIALQWVAEFKLGNF
WD"
CDS complement(2079..2309)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22686.1"
/transl_table=11
/translation="MPSTYAKKVTRDISSGFLSYLSDKKWDAELEETLYSNLMKYLAA
DGHLGESKFDSTAHEIIDGLENLALRLCPQAF"
CDS complement(2485..2808)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22687.1"
/transl_table=11
/translation="MAHAYIFFETSFTFNDMKCSTVQTFSGLASCAVDLYTSSYSDDS
RITIRDTNTGDKLEIEGMTNSALQGAVISYVHALGYRKEDASAKAFLENLSTQLAKAM
DKEAA"
CDS 3143..3643
/codon_start=1
/product="putative sigma factor"
/protein_id="BAR22688.1"
/transl_table=11
/translation="MCYTPKYKSTRYKALQLANLARKVVPFAMNENTTETKEVKRFGG
PRNPKDIQEARIMRLYRRQLEGLPALQLVLDHASKEQVGRATAFRDWKAVQALNREDF
EREREDMASRIFSMRSRLYNSAVKRGQMQTAANVLDSLARMVGCDQPEESSTLPEIHV
KIEKPE"
CDS 3656..4906
/codon_start=1
/product="phage terminase large subunit"
/protein_id="BAR22689.1"
/transl_table=11
/translation="MPKTLDISLRPAQGTVFSAKNRFRVLVAGRRFGKSYLSCIELFT
KALERPGETFFYCAPTYRMAKDIAWKALKKIIPKEYIRSKNETDLRLDLVNDSTIELK
GTENAMALRGRSLAGVVLDEAAFMESEVWFEVIRPALADKQGWALFISTPDGTASWFY
DLWCFCEEDKTGDWIRWCYTTIEGGNVPAHEVEAARAQLDARTFRQEFEASFENLTGL
VAVSFGDTNISPEAKDVSVLPLLLGVDFNVDPMSGICAVKKDDTLYVFDEIMMRGGAT
TWDFAEEVTRRYGVDRRVIACPDPTGGARKTSGVGVTDHTILRRSGFSVQTPKAPWKI
RDKITAVNTALLDASGTRRTYIHPRCKELIKSLRTLTYAPGTGLPNKNLGVDHAFDAF
GYLVLQQFNLAKPEAMGTTTYRLY"
CDS 4909..5154
/codon_start=1
/product="transcriptional regulator NrdR"
/protein_id="BAR22690.1"
/transl_table=11
/translation="MFRPINAPACPECGSVETKVLGRYTSQEDDCVRDRRCNDCGHRW
KTLQSPEEVLDPSIRVKFSKWTSKEGSRRRVKLEYAP"
BASE COUNT 1263 a 1376 c 1335 g 1233 t
ORIGIN
1 tccgtagtgt ctcctggcac gcttcacggc ttcatccagc gaagcagcca aggtctgaca
61 ccgttgaata ccctcagcat tggatacaaa agtgagatgc acgagtctca cttcgttggg
121 ttgccacgag ggcatggcca ttgcctggag cgtttttgct tcgttcattt gaaatcctta
181 cggggttcgt cgtaatcaac tatttgcaag taactaagta tccgatcttg taactcctgg
241 agcgttttaa acctgggact gtctcccaaa ccagctttaa gctgcgtgtt catcttccaa
301 tacaaagcgt cagccaacaa agctaattcg tggtccgtga attgagttag cttcatactc
361 gacgactcca atcaaattta tccaccattg tgtcgcaact tatgcactgg agcgcagacc
421 acgagaagtg gtagacgcga tgtaccgcac cacagcgcgg acacttaatc atgcgcccag
481 aagaactagc cctggtggaa cgtgtcaccg gaccccagag ttcatctgct ggagcgattt
541 gtacgagacg gtttggaaag taagtcatcg gaggttgcga ttgcgttctg caggtgtagg
601 gatggagcgc tcccaatcga gctgttcttg ctcgatggcg agttcttcaa gttcttcttc
661 cgtataaaac ggaaggtcat cagctgggtc gtagtcgtgg ttcatgagac aaaaacttag
721 gtgttgtgag acaacccgcc catacgagcg agcctttcgt attcacgcac aagacgggca
781 tagtcctgca cgttccctgc ctggaacgca tcagtcagca actggagcgt catccgcatc
841 agagcatcac gatcggtgta atcgatctca ggggttggct ctgcttcgag tttgggatcc
901 tcggaagccc gctgaatatc agcagtgtcc acatccctgt aagcggtggc acgactgaca
961 ccgtgtttcc gctgaagcgt tgcggcaaca tgagccttct tgaggcccat atccagcagt
1021 cgcttcgcca gctcatgctg agcgtcaagt tcctgcgtgg ttcgtttcat gttcactcat
1081 gggtggtgag tagtctactg tgcgactcta gcagcaataa aaagccccgg tcaagccagg
1141 gctgctgttg gatattcgtt gaggtagctg gtgatgtctt cacggatgca gtcgaaacct
1201 tcacgccagg gcgtgtcgtc atgccgagca gcgaagacac agaggccatg gcgctggagc
1261 atgttcacac gatcgctggt gctttcggct tcccaatact tactgacgcc ttcccattcc
1321 agttcggaat ggtcgtcgtc ggaaagcagc gggtaacctt caactgcctg gatcgattcg
1381 atcatttcgt cagttatgaa ccggatgtct acggcaatgc cacagccatt gtgtccatac
1441 ccaatctcat ggattgcatc gtgtggatcg tcagagtcca gaaaggttct gaagttcgac
1501 agacccacca agccggtgtt gccgtaatcg ctgtatccga accacgatgg tacgaaagcc
1561 agtgataact cacgccagcc attatcaatg caacgctgga acagatcctt gtaagactgc
1621 tcccaccaga tcctgcttgg ttcggtgtct tcaagcagca cccaatgacc ttgacagcca
1681 tcgagtgcat cgattcggcg cattaattct tgagtcatca gtcccagaaa ttgccgagct
1741 tgaattctgc aacccactgg agtgcgatct gctcagctac gtggagccga acaaacttcg
1801 gaaacgtttc attccactta gaagtcatgc ttccgaactc tcggtggtac tgcttagctg
1861 caggagtcaa gcagtaacgt tcgatcgagt ggattgctag gtcgagtgag aagttgccgc
1921 gcttgtagtg cttgctcaga ttcttgatca ctggtgcata ccagatctca acattcgtcg
1981 catacagttc caactcgcgt gctgcatcgc agtcgagact ttgtgctttc atgtcattga
2041 aggaagtgtg ccccagggcg ataaccctgg agcgtggact agaacgcttg agggcagagt
2101 ctaagggcta gattctccag cccatcgatt atttcgtgag ccgttgaatc aaacttagac
2161 tctcctaagt gaccatcagc ggccagatat ttcatgagat tgctatatag agtttcctct
2221 aattcagcat cccatttttt atctgaaagg taagaaagaa aacccgagga aatatctcgg
2281 gttactttct ttgcgtaagt ggaaggcatc aaagaaagga agggagttca ggtgagagtg
2341 tctcgattct gtagcagaat ctatcgccgt tgaccgcgcg gcagagccga gcgaatagct
2401 cagcttgctg cttggtacgc gggcgtgatc cgtgggcagg aatccagcct gagctgattc
2461 cggcgtagcg agtcactaga tgtctcacgc tgcctcctta tccatcgcct tcgcaagctg
2521 ggttgaaagg ttctctagga acgccttcgc gcttgcgtct tccttgcgat acccgagcgc
2581 gtgaacgtag ctgatcaccg caccttgtag tgcgctgtta gtcatgccct cgatctcgag
2641 tttatcgccc gtgttggtat cacggatcgt gatcctgctg tcgtcgctgt aggagctggt
2701 atacaggtcc accgcacacg acgcaagtcc gctgaatgtt tgcactgttg agcacttcat
2761 gtcattgaaa gtaaaggacg tttcgaaaaa tatgtaggcg tgagccattg tcaagtttca
2821 tggactgatg ctgtggaccg gtgaagcgtg gatgtccgcg tgcaacgggg ccggaggctg
2881 ccgcctaagg tccgggtctg cccactgcgt cggcttgcgt gctacactgg tcggctgaac
2941 tgtaggagcg gtgcgggtag tgctcccccc tccactcttc taatgtattc cattgtgcgc
3001 cagtagtctg tatcaacgga taccaaatgg gggcagggtt gcagtcttta tattctctta
3061 aggctgcgcg gggaacttaa ataaatatcc ccagactttt ctattgtgct accgggggca
3121 ggggtaaaaa agcaaaactc ttatgtgcta caccccaaaa tacaagagca ctcgatataa
3181 ggctttacaa cttgctaatc tggcgagaaa ggtcgtgcct tttgctatga acgagaacac
3241 cactgaaacc aaagaagtaa aacgattcgg tggtcctaga aacccgaagg acattcagga
3301 agcccgaatt atgcggcttt accgccgcca actcgaagga ctgcctgcac ttcagctggt
3361 tttagaccac gcatcgaaag aacaggtggg tcgtgccacc gcattccgcg actggaaagc
3421 agttcaagcg ctaaaccgcg aagattttga gcgagagcga gaagatatgg cctcacgtat
3481 attttccatg cgttcgcgtc tatacaactc agctgtaaaa cgcggtcaaa tgcaaaccgc
3541 cgccaatgtc ctcgactccc tggcgcgtat ggttggctgc gatcaacccg aagaaagtag
3601 cacactgcct gaaattcacg ttaagatcga aaaacccgag taaaactact ttttagtgcc
3661 aaaaacactc gatataagcc ttcgtcccgc ccaaggcaca gtatttagcg caaaaaacag
3721 atttcgagtg cttgttgcag gccgccgctt cggcaaatct tacctttcat gcatagaact
3781 atttacaaaa gccctggaac gtcccggtga aacgttcttt tactgcgccc ccacgtaccg
3841 aatggcaaag gacattgcct ggaaagccct aaaaaagata atacccaaag agtacattcg
3901 ttctaagaat gaaaccgacc ttcgcctgga cttagtaaac gattcaacaa tcgaactaaa
3961 aggcacagaa aacgcaatgg ctcttcgtgg gcgctccctt gccggggtgg tactcgacga
4021 agctgcattt atggaatcag aggtgtggtt cgaagtcatc cgccccgccc tcgcggacaa
4081 acaaggctgg gctctcttca tctccacccc ggatggaaca gccagctggt tttacgacct
4141 gtggtgtttt tgcgaagagg acaaaacggg cgattggatt cgctggtgct acacaacgat
4201 tgaagggggt aatgttccgg cgcacgaagt cgaagcagcg cgtgcccaac ttgacgcccg
4261 cacattccga caagaatttg aagcttcctt tgaaaatcta actggcctag tagccgtcag
4321 ttttggcgac acaaacatct ctccagaagc taaagacgta tctgttttgc ccttactgct
4381 gggggtggat ttcaacgtag acccaatgtc cggtatctgc gccgtcaaaa aagacgacac
4441 cctctacgtt ttcgacgaaa taatgatgcg tggcggcgca acaacctggg actttgccga
4501 agaagttacc cgccgttatg gcgtagaccg ccgcgtcatt gcctgccctg accctacggg
4561 tggagcacgt aaaacaagtg gcgtcggcgt cactgatcac accatcctgc gtcgcagcgg
4621 attctccgta caaaccccca aagccccttg gaaaatccgc gacaaaataa ccgccgtcaa
4681 caccgccctt ctcgacgcaa gcggaacccg ccgcacctac atccaccccc gctgcaagga
4741 actaatcaag tcgttgcgaa cactgaccta cgcccctgga acgggcctac ccaacaaaaa
4801 tctgggtgta gaccatgctt ttgacgcctt cggctacctt gtactgcagc agttcaactt
4861 ggccaagccc gaggccatgg gaactacgac ataccgcctg tactaaggat gttccgaccg
4921 atcaacgccc ccgcatgtcc agagtgcggc tcagtcgaga ccaaagtcct gggacgttat
4981 acgtcgcaag aggacgactg cgttagagat cgtcgttgta acgactgcgg acaccgttgg
5041 aagacgctgc aatcccccga ggaggtacta gacccgtcaa tccgagtcaa gttttcaaaa
5101 tggaccagta aggagggcag tcggcgtcgg gtgaagctgg aatatgcgcc ttagtctgtt
5161 taggatgggg gtaccatcgt ttttgcgtca tgcctggtca ttacggt
//