LOCUS AP013882 5106 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1-MedDCM-OCT-S33-C296, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013882
VERSION AP013882.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 5106)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5106
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1-MedDCM-OCT-S33-C296"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS complement(165..356)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22649.1"
/transl_table=11
/translation="MKLTQFTDHELALLADALYWKMNTQLKAGLGDSPRFKTLQELQD
RILSYLQIVDYDEPRKDFK"
CDS complement(565..705)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22650.1"
/transl_table=11
/translation="MNHDYDPADDLPFYTEEELEELAIEQEQLDWERSIPTPAERNRN
LR"
CDS complement(717..1070)
/codon_start=1
/product="putative DNA binding protein"
/protein_id="BAR22651.1"
/transl_table=11
/translation="MKRTTQELDAQHELAKRLLDMGLKKAHVAATLQRKHGVSRATAY
RDVDTADIQRASEDPKLEAEPTPEIDYTDRDALMRMTLQLLTDAFQAGNVQDYARLVR
EYERLARMGGLSHNT"
CDS complement(1170..1400)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22652.1"
/transl_table=11
/translation="MVIQTFRNVSCFQVFVPEKRGWLKYRPTWHEPGWWHCEFYLQNG
DLQKRKLLSSAYAEEIWHRFKSQDTCETTYAS"
CDS complement(1400..1714)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22653.1"
/transl_table=11
/translation="MKAQSIDCDAARELELYATNVEIWYAPVIKNLSKHYKRGNFSLD
LAIHSIERYCLTPAAKQYHREFGSMTSKWNETFPKFVRLHVAEQIALQWVAEFKLGNF
WD"
CDS complement(1761..1991)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22654.1"
/transl_table=11
/translation="MASSYSQKVTRDISSGFLSYLSDKKWDAELEETLYSDLMKYLAA
DGHLRESKFDSTAHEIIDGLENLARRLCPQAF"
CDS complement(1991..2170)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22655.1"
/transl_table=11
/translation="MRHLVTRYAGVSSGWLPAHGSRPRTKQQAELFARLCRAVNGDRF
CYRVETLSPELPSFL"
CDS complement(2167..2490)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22656.1"
/transl_table=11
/translation="MAHAYIFFETSFTFNDMKCSTVQTFSGLASCAVDLYTSSYSDDS
RITVRDTNTGDKLEIEGMTNSALQGAVISYVHALGYRKEDASAKAFLENLSTQLAKAM
DKEAA"
CDS 2910..3326
/codon_start=1
/product="putative sigma factor"
/protein_id="BAR22657.1"
/transl_table=11
/translation="MDENTTETKEVKRFGGPRNPKDIQEARIMRLYRRQLEGLPALQL
VLDHASKEQVGRATAFRDWKAVQALNREDFEREREDMASRIFSMRSRLYNSAVKRGQM
QTAANVLDSLARMVGCDQPEESSTLPEIHVKIEKPE"
CDS 3339..4589
/codon_start=1
/product="phage terminase large subunit"
/protein_id="BAR22658.1"
/transl_table=11
/translation="MPKTLDISLRPAQGTVFSAKNRFRVLVAGRRFGKSYLSCIELFT
KALERPGETFFYCAPTYRMAKDIAWKALKKIIPKEYIRSKNETDLRLDLVNDSTIELK
GTENAMALRGRSLAGVVLDEAAFMESEVWFEVIRPALADKQGWALFISTPDGTASWFY
DLWCFCEEDKTGDWIRWCYTTIEGGNVPAHEVEAARAQLDARTFRQEFEASFENLTGL
VAVSFGDTNISPEAKDVSVLPLLLGVDFNVDPMSGICAVKKDDTLYVFDEIMMRGGAT
TWDFAEEVTRRYGVDRRVIACPDPTGGARKTSGVGVTDHTILRRSGFSVQTPKAPWKI
RDKITAVNTALLDASGTRRTYIHPRCKELIKSLRTLTYAPGTGLPNKNLGVDHAFDAF
GYLVLQQFNLAKPEAMGTTTYRLY"
BASE COUNT 1269 a 1344 c 1318 g 1175 t
ORIGIN
1 tccgtagtgt ctcctggcac gcttcacggc ttcatccagc gaagcagcca aggtctgaca
61 ccgttgaata ccctcagcat tggatacaaa agtgagatgc acgagtctca cctcgttggg
121 ttgccacgag ggcatggcca ttgcctggag cgtttttgct tcgttcattt gaaatcctta
181 cggggttcgt cgtaatcaac tatttgcaag taactgagta ttcgatcctg taactcctgg
241 agcgttttaa acctgggact gtctcccaaa ccagctttaa gctgcgtgtt catcttccaa
301 tacaaagcat cagccaacaa agctaattcg tggtccgtga attgagttag cttcatactc
361 gacgactcca atcaaattta tccaccattg tgtcgcaact tatgcactgg agcgcagacc
421 acgagaagtg gtagacgcga tgtaccgcac cgcagcgcgg acacttaatc atgcgcccag
481 aagaactagc cctggtggaa cgcgtcaccg gaccccaaag ttcatctgct ggagcgattt
541 gtacgagacg gtttggaaag taagtcatcg gaggttgcga ttgcgttctg caggtgtagg
601 gatggagcgc tcccaatcga gctgttcttg ctcgatggcg agttcttcaa gttcttcttc
661 cgtataaaac ggaagatcat cagctgggtc gtagtcgtgg ttcatgagac aaaaacttag
721 gtgttgtgag acaacccgcc catacgagcg agcctttcgt attcacgcac aagacgggca
781 tagtcctgca cgttccctgc ctggaacgca tcagtcagca actggagcgt catccgcatc
841 agagcatcac gatcggtgta atcgatctca ggggttggct ctgcttcgag tttgggatcc
901 tcggaagccc gctgaatatc agcagtgtcc acatccctgt aagcggtggc acgactgaca
961 ccgtgtttcc gctgaagcgt tgcggcaaca tgagccttct tgaggcccat atccagcagt
1021 cgcttcgcca gctcatgctg agcgtcaagt tcctgcgtgg ttcgtttcat gttcactcat
1081 gggtggtgag tagtctactg tgcgactcta gcagcaataa aaagccccgg tcaagccagg
1141 gcgtgctcag agtgttcagt catcggtgct taggaagcgt aggttgtctc acaagtgtct
1201 tgggacttga aacggtgcca gatttcttcg gcataagccg agctaagaag cttgcgcttc
1261 tgcaagtcac cgttttgcaa gtagaactcg caatgccacc acccaggctc atgccatgtg
1321 gggcgatact tcagccaccc ccgcttctca ggtacaaaga cctggaagca ggagacgtta
1381 cggaacgttt gaataaccat cagtcccaga aattaccgag cttgaattct gcaacccact
1441 ggagtgcgat ctgctcagct acgtggagcc gaacaaactt cggaaacgtt tcattccact
1501 tagaagtcat gcttccgaac tctcggtggt actgcttagc tgcaggagtc aagcagtagc
1561 gttcgatcga gtgaatcgct aggtcgagtg agaagttgcc gcgcttgtag tgcttgctca
1621 gattcttgat cactggtgca taccagatct caacattcgt cgcatacagt tccaactcgc
1681 gtgctgcatc gcagtcgata ctttgtgctt tcatgtcatt gaaggaagtg tgccccaggg
1741 cgataaccct ggagcgtgga ctagaacgct tgagggcaga gtctacgggc tagattctcc
1801 agcccatcga ttatttcgtg agccgttgaa tcaaacttag actctcttaa gtgaccatca
1861 gcggccagat atttcatgag atcgctatat agagtttcct ctaattcagc atcccatttt
1921 ttatctgaaa ggtaagaaag aaaacccgag gaaatatctc gggttacttt ctggctgtaa
1981 ctggaagcca tcacagaaag gaaggtagtt caggagagag tgtctcgact ctgtagcaga
2041 atcgatcgcc gttgaccgcg cggcagagcc gagcgaatag ctcagcctgc tgcttggtgc
2101 gaggacgcga accgtgggcg ggaagccagc cagagctgac ccccgcatag cgagtcacta
2161 gatgtctcac gctgcctcct tatccatcgc cttcgcaagc tgggtcgaaa ggttctctag
2221 gaatgccttc gcgcttgcgt cttccttgcg atacccgagc gcgtgaacgt agctgatcac
2281 cgcaccttgt agtgcgctgt tagtcatgcc ctcgatctcg agcttatcgc ccgtgttggt
2341 atcacggact gtgatcctgc tgtcgtcgct gtaggaactg gtatacagat ccaccgcgca
2401 cgacgcaagt ccgctgaatg tctgcactgt tgagcacttc atgtcattga aagtaaagga
2461 cgtttcgaaa aatatgtagg cgtgagccat tgtcaagttt catggactga tgctgtggac
2521 cggtgaagcg tggatgtccg cgtgcaacgg ggccggaggc tgccgcctaa ggtccgggtc
2581 tgcccactgc gtcggcttgc gtgctacact ggtcggctga actgtaggag cggtgcgggt
2641 agtgctcccc cctccactct tctaatgtat tccattgtgc gccagtagtc tgtatcaacg
2701 gataccaaat ggggggcagg gttgcagtct ttatattctc ttaaggctgc gcggggaact
2761 taaataaata tccccagact tttctattgt gctaccgggg gcaggggtca aaaagcaaaa
2821 ctcttatgtg ctacacccca aaatacaaaa gcactcgata taaggcttta caacttgcta
2881 atctggcgag aaaggtcgtg ccttttgcta tggacgaaaa caccactgaa accaaagaag
2941 taaaacgatt cggtggtcct agaaacccga aggacattca ggaagcccga attatgcggc
3001 tttaccgccg ccaactcgaa ggactgcctg cacttcagct ggttttagac cacgcatcga
3061 aagaacaggt gggtcgtgcc accgcattcc gcgactggaa agcagttcaa gcgctaaacc
3121 gcgaagattt tgagcgagag cgagaagata tggcctcacg tatattttcc atgcgttcgc
3181 gcctatacaa ctcagctgta aaacgcggtc aaatgcaaac cgccgccaat gtcctcgact
3241 ccctggcgcg tatggttggc tgcgatcaac ccgaagaaag tagcacactt cctgaaattc
3301 acgttaagat cgaaaaaccc gagtaaaact actttttagt gccaaaaaca ctcgatataa
3361 gccttcgtcc cgcccaaggc acagtattta gcgcaaaaaa cagatttcga gtgcttgttg
3421 caggccgccg cttcggcaaa tcttaccttt catgcataga actatttaca aaagccctgg
3481 aacgtcccgg tgaaacgttc ttttactgcg cccctacata ccgaatggca aaggacattg
3541 cctggaaggc cctaaaaaag ataataccca aagagtacat tcgttctaag aatgaaaccg
3601 accttcgcct ggacttagta aacgactcaa caatcgaact aaaaggcaca gaaaacgcaa
3661 tggctcttcg tgggcgctcc cttgccgggg tggtactcga cgaagctgca tttatggaat
3721 cagaggtgtg gttcgaagtc atccgccccg ccctcgcgga caaacaaggc tgggctctct
3781 tcatctccac cccggatgga acagccagct ggttttacga cctgtggtgt ttttgcgaag
3841 aggacaaaac aggcgattgg attcgctggt gctacacaac gattgaaggg ggtaatgttc
3901 cggcgcacga agtcgaagca gcgcgtgccc aacttgacgc ccgcacattc cgacaagaat
3961 tcgaagcttc ctttgaaaat ctaactggcc tagtagccgt cagttttggc gacacaaaca
4021 tctctccaga agctaaagac gtatctgttt tgcccttact gctgggggtg gatttcaacg
4081 tagacccaat gtccggcatc tgcgccgtca aaaaagacga caccctctac gttttcgacg
4141 aaataatgat gcgtggcggc gcaacaacct gggactttgc cgaagaagtt acccgccgtt
4201 atggcgtaga ccgccgcgtc attgcctgcc ctgaccctac gggtggtgca cgtaaaacaa
4261 gtggcgtagg cgtcactgat cacaccatcc tgcgtcgcag cggattctcc gtacaaaccc
4321 ccaaagcccc ttggaaaatc cgcgacaaaa taaccgccgt caacaccgcc cttctcgacg
4381 caagcggaac ccgccgcacc tacatccacc cccgctgcaa ggaactaatt aagtcgttgc
4441 gaacactgac ctacgcccct ggaacgggtc tacccaacaa aaatctgggt gtagaccatg
4501 cttttgacgc cttcggctac cttgtactgc agcagttcaa cttggccaag ccagaggcca
4561 tgggaactac gacataccgc ctgtactaag gatgttccga ccgatcaacg cccccgcatg
4621 tccagagtgc ggctcagtcg agaccaaagt cctgggacgt tatacgtcgc aagaggacga
4681 ctgcgttaga gatcgtcgtt gtaacgactg cggacaccgt tggaagacgc tgcaatcccc
4741 cgaggaggta ctagacccgt caatccgagt caagttttca aaatggacca gtaaggaggg
4801 cagtcggcgt cgggtgaagc tggaatatgc gccttagtct gtttaggatg ggggtaccat
4861 cgtttttgcg tcatgcctgg tcattacggt actggcaaga aaaagcccac caagaaaaag
4921 ggtacgaaga aaggcagtaa gaagatgagg tgcacttgtg gcaagtgaga acgtcccagt
4981 caacaaggcg ctttatgcgc gtgtgaaggc tgaggcgaag cgcaaatttg acgtgtaccc
5041 cagtgcttat gcgaatgcat ggctggtacg cgaatataag aagcgtggtg gcacctaccg
5101 gaaagc
//