LOCUS AP013879 5168 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1-MedDCM-OCT-S24-C259, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013879
VERSION AP013879.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 5168)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5168
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1-MedDCM-OCT-S24-C259"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS 31..216
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22612.1"
/transl_table=11
/translation="MARENGLVEFPASPQQLEEALDRIFRGKVNVARQAEDLGMPVER
LKQLTTDYILERPMDRY"
CDS complement(200..496)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22613.1"
/transl_table=11
/translation="MNEAKTLQAMAMPSWQPNEVRLVHLTFVSNAEGIQRCQTLAASL
DEAVKRARRHYGPGDLNAWGTRKLPIDGGLVGGGKLLRGKRDVDHTDSLINIYP"
CDS complement(493..684)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22614.1"
/transl_table=11
/translation="MKLTQFTDHELALLADALYWKMNTQLKAGLGDSPRFKTLQELQD
RILSYLQIVDYDEPRKDFK"
CDS complement(681..896)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22615.1"
/transl_table=11
/translation="MTYFPNRLVQIAPADELWGPVTRSTRASSSGRMIKCPRCGAVHR
VYHFSWSALQCISCDTMVDKFDWSRRV"
CDS complement(893..1033)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22616.1"
/transl_table=11
/translation="MNHDYDPADDLPFYTEEELEELAIEQEQLDWERSIPTPAERNRN
LR"
CDS complement(1045..1398)
/codon_start=1
/product="putative DNA binding protein"
/protein_id="BAR22617.1"
/transl_table=11
/translation="MKRTTQELDAQHELAKRLLDMGLKKAHVAATLQRKHGVSRATAY
RDVDTADIQRASEDPKLEAEPTPEIDYTDRDALMRMTLQLLTDAFQAGNVQDYARLVR
EYERLARMGGLSHNT"
CDS complement(1459..2046)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22618.1"
/transl_table=11
/translation="MTQELMRRIDALDGCQGHWVLLEDTEPSRIWWEQSYKDLFQRCI
DNGWRELSLAFVPSWFGYSDYGNTGLVGLSNFRTFLDSDDPHDAIHEIGYGHNGCGIA
VDIRFITDEMIESIQAVEGYPLLSDDDHSELEWEGVSKYWEAESTSDRVNMLQRHGLC
VFAARHDDTPWREGFDCIREDITSYLNEYPTAALA"
CDS complement(2046..2360)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22619.1"
/transl_table=11
/translation="MKAQSLDCDAARELELYATNVEIWYAPVIKNLSKHYKRGNFSLD
LAIHSIERYCLTPAAKQYHREFGSMTSKWNETFPKFVRLHVAEQIALQWVAEFKLGNF
WD"
CDS complement(2407..2637)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22620.1"
/transl_table=11
/translation="MPSTYAKKVTRDISSGFLSYLSDKKWDAELEETLYSNLMKYLAA
DGHLGESKFDSTAHEIIDGLENLALRLCPQAF"
CDS complement(2813..3136)
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22621.1"
/transl_table=11
/translation="MAHAYIFFETSFTFNDMKCSTVQTFSGLASCAVDLYTSSYSDDS
RITIRDTNTGDKLEIAGMTNSALQGAVISYVHALGYRKEDASAKAFLENLSTQLAKAM
DKEAA"
CDS 3472..3972
/codon_start=1
/product="putative sigma factor"
/protein_id="BAR22622.1"
/transl_table=11
/translation="MCYTPKYKSTRYKALQLANLARKVVPFAMDENTTETKEVKRFGG
PRNPKDIQEARIMRLYRRQLEGLPALQLVLDHASKEQVGRATAFRDWKAVQALNREDF
EREREDMASRIFSMRSRLYNSAVKRGQMQTAANVLDSLARMVGCDQPEESSTLPEIHV
KIEKPE"
BASE COUNT 1263 a 1371 c 1314 g 1220 t
ORIGIN
1 tgagttagaa ttacgtgggg cggagtgcca atggctagag agaatggact tgtggaattc
61 ccagcaagcc cacaacaact agaagaagcc ctggaccgta tcttcagagg caaggtcaac
121 gtggctcggc aagccgaaga cctaggaatg ccggtggagc ggctaaagca gctaaccacc
181 gactacatcc tggaacgtcc tatggataga tattgatcag actgtccgtg tggtccacgt
241 cacgtttacc gcgtagcagc ttccccccac caaccaaacc cccatctatg ggtagtttcc
301 tggtccccca ggcattgagg tcccctggtc cgtagtgtct cctggcacgt ttcacggctt
361 catccagcga agcagccaag gtctgacacc gttgaatacc ctcagcattg gatacaaaag
421 tgagatgcac gagtctcacc tcgttgggtt gccacgaggg catggccatt gcctggagcg
481 tttttgcttc gttcatttga aatccttacg gggttcgtcg taatcaacta tttgcaagta
541 actaagtatc cgatcttgta actcctggag cgttttaaac ctgggactgt ctcccaaacc
601 agctttaagc tgcgtgttca tcttccaata caaagcgtca gccaacaaag ctaattcgtg
661 gtccgtgaat tgagttagct tcatactcga cgactccaat caaatttatc caccattgtg
721 tcgcaactta tgcactggag cgcagaccac gagaagtggt agacgcgatg taccgcacca
781 cagcgcggac acttaatcat gcgcccagaa gaactagccc tggtggaacg tgtcaccgga
841 ccccagagtt catctgctgg agcgatttgt acgagacggt ttggaaagta agtcatcgga
901 ggttgcgatt gcgttctgca ggtgtaggga tggagcgttc ccaatcaagc tgttcttgct
961 cgatggcgag ttcttcgagt tcttcctccg tataaaacgg aagatcatca gctgggtcgt
1021 agtcgtggtt catgagacaa aaacttaggt gttgtgagac aacccgccca tacgagcgag
1081 cctttcgtat tcacgcacaa gacgggcata gtcctgcacg ttccctgcct ggaacgcatc
1141 agtcagcaac tggagcgtca tccgcatcag agcatcacga tcggtgtaat cgatctcagg
1201 ggttggctct gcttcgagtt tgggatcctc ggaagcccgc tgaatatcag cagtgtccac
1261 atccctgtaa gcggtggcac gactgacacc gtgtttccgc tgaagcgttg cggcaacatg
1321 agccttcttg aggcccatat ccagcagtcg cttcgccagc tcatgctgag cgtcaagttc
1381 ctgcgtggtg cgtttcatgt tcactcatgg gtggggagta gtctactgtg cgactttagc
1441 agcaataaaa agccccggtc aagccagggc tgctgttgga tattcgttga ggtagctggt
1501 gatgtcttca cggatgcagt cgaaaccttc acgccagggc gtgtcgtcat gccgagcagc
1561 gaagacacag aggccatggc gctggagcat gttcacacga tcgctggtgc tttcggcttc
1621 ccaatactta ctgacgcctt cccattccag ttcggaatgg tcgtcgtcgg aaagcagcgg
1681 gtaaccttca actgcctgga tcgattcgat catttcgtca gttatgaacc ggatgtctac
1741 ggcaatgcca cagccattgt gtccataccc aatctcatgg attgcatcgt gtggatcgtc
1801 agagtccaga aaggttctga agttcgacag acccaccaag ccggtgttgc cgtaatcgct
1861 gtatccgaac cacgatggta cgaaagccag tgataactca cgccagccat tatcaatgca
1921 acgctggaac agatccttgt aagactgctc ccaccagatc ctgcttggtt cggtgtcttc
1981 aagcagcacc caatgacctt gacagccatc gagtgcatcg attcggcgca ttaattcttg
2041 agtcatcagt cccagaaatt gccgagcttg aattcagcaa cccactggag tgcgatctgc
2101 tcagctacgt ggagccgaac aaacttcgga aacgtttcat tccacttaga agtcatgctt
2161 ccgaactctc ggtggtactg cttagctgca ggagtcaagc agtagcgttc gatcgagtga
2221 attgctaggt cgagtgagaa gttgccgcgc ttgtagtgct tgctcagatt cttgatcact
2281 ggtgcatacc agatctcaac attcgtcgca tacagttcca actcgcgtgc tgcatcgcag
2341 tcgagacttt gtgctttcat gtcattgaag gaagtgtgcc ccagggcgat aaccctggag
2401 cgtggactag aacgcttgag ggcagagtct aagggctaga ttctccagcc catcgattat
2461 ttcgtgagcc gttgaatcaa acttagactc tcctaagtga ccatcagcgg ccagatattt
2521 catgagattg ctatatagag tttcctctaa ttcagcatcc cattttttat ctgaaaggta
2581 agaaagaaaa cccgaggaaa tatctcgggt tactttcttt gcgtaagtgg aaggcatcaa
2641 agaaaggaag ggagttcagg tgagagtgtc tcgattctgt agcagaatct atcgccgttg
2701 accgcgcggc agagccgagc gaatagctca gcttgctgct tggtacgcgg gcgtgatccg
2761 tgggcaggaa tccagcctga gctgattccg gcgtagcgag tcactagatg tctcacgctg
2821 cctccttatc catcgccttc gcaagctggg ttgaaaggtt ctctaggaac gccttcgcgc
2881 ttgcgtcttc cttgcgatac ccgagcgcgt gaacgtagct gatcaccgca ccttgtagtg
2941 cgctgttagt catgcccgcg atctcgagct tatcgcccgt gttggtatca cggatcgtta
3001 tcctgctgtc gtcgctgtag gaactggtat acagatccac cgcgcacgat gcaagtccgc
3061 tgaatgtctg cactgttgag cacttcatgt cattgaaagt aaaggacgtt tcgaaaaata
3121 tgtaggcgtg agccattgtc aagtttcatg gactgatgct gtggaccggt gaagcgtgga
3181 tgtccgcgtg caatggggcc ggaggctgcc gcctaaggtc cgggtctgcc cactgcgtcg
3241 gcttgcgtgc tacactggtc ggctgaactg taggagcggt gcgggtagtg ctgccccctc
3301 cactcttcta atgtattcca ttgtgcgcca gcagtctgta tcaaccaata ccaaatgggg
3361 ggtagggttg cagtctttat attctcttaa ggctgcgcgg ggaacttaaa taaatatccc
3421 cagacttttc tattgtgcta ccgggggtag gggtcaaaaa gcaaaactct tatgtgctac
3481 accccaaaat acaagagcac tcgatataag gctttacaac ttgctaatct ggcgagaaag
3541 gtcgtgcctt ttgctatgga cgagaacacc actgaaacca aagaagtaaa acgattcggt
3601 ggtcctagaa acccgaagga cattcaggaa gcccgaatta tgcggcttta ccgccgccaa
3661 ctcgaaggac tgcctgcact tcagctggtt ttagaccacg catcgaaaga acaggtgggt
3721 cgtgccaccg cattccgcga ctggaaagca gttcaagcgc taaaccgcga agattttgag
3781 cgagagcgag aagatatggc ctcacgtata ttttccatgc gttcgcgcct atacaactca
3841 gctgtaaaac gcggtcaaat gcaaaccgcc gccaatgtcc tcgactccct ggcgcgtatg
3901 gttggctgcg atcaacccga agaaagtagc acactgcctg aaattcacgt taagatcgaa
3961 aaacccgagt aaaactactt tttagtgcca aaaacactcg atataagcct tcgtcccgcc
4021 caaggcacag tatttagcgc aaaaaacaga tttcgagtgc ttgttgcagg ccgccgcttc
4081 ggcaaatctt acctttcatg catagaacta tttacaaaag ccctggaacg tcccggtgaa
4141 acgttctttt actgcgcccc cacgtaccga atggcaaagg acattgcctg gaaagcccta
4201 aaaaagataa tacccaaaga gtacattcgt tctaagaatg aaaccgacct tcgcctggac
4261 ttagtaaacg attcaacaat cgaactaaaa ggcacagaaa acgcaatggc tcttcgtggg
4321 cgctcccttg ccggggtggt actcgacgaa gctgcattta tggaatcaga ggtgtggttc
4381 gaagtcatcc gccccgccct cgcggacaaa caaggttggg ctctcttcat ctccaccccg
4441 gatggaacag ccagctggtt ttacgacctg tggtgttttt gcgaagagga caaaacaggc
4501 gattggattc gctggtgcta cacaacgatt gaagggggta atgttccggc gcacgaagtc
4561 gaagcagcgc gtgcccaact tgacgcccgc acattccgac aagaattcga agcttccttt
4621 gaaaatctaa ctggcctagt agccgtcagt tttggcgaca caaacatctc tccagaagct
4681 aaagacgtat ctgttttgcc cttactgctg ggggtggatt tcaacgtaga cccaatgtcc
4741 ggtatctgcg ccgtcaaaaa agacgacacc ctctacgttt tcgacgaaat aatgatgcgc
4801 ggcggcgcaa caacctggga ctttgccgaa gaagttaccc gccgttatgg cgtagaccgc
4861 cgcgtcattg cctgccctga ccctacgggt ggtgcacgta aaacaagtgg cgtaggcgtc
4921 actgatcaca ccatccttcg tcgcagcgga ttctccgtac aaacccccaa agccccttgg
4981 aaaatccgcg acaaaataac cgccgtcaac accgcccttc tcgacgcaag cggaacccgc
5041 cgcacctaca tccacccccg ttgcaaggaa ctaatcaagt cgttgcgaac actgacctac
5101 gcccctggaa cgggtctacc taacaaaaat ctgggtgtag accatgcttt tgacgccttc
5161 ggctacct
//