LOCUS AP013878 5720 bp DNA linear HTG 30-OCT-2015
DEFINITION Uncultured Mediterranean phage uvMED DNA, genomic fragment, group
G3, isolate: uvMED-CGF-C1-MedDCM-OCT-S23-C198, *** SEQUENCING IN
PROGRESS ***.
ACCESSION AP013878
VERSION AP013878.1
DBLINK BioProject:PRJDB1484
KEYWORDS ENV; HTG; HTGS_PHASE2.
SOURCE uncultured Mediterranean phage uvMED
ORGANISM uncultured Mediterranean phage uvMED
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; environmental samples.
REFERENCE 1 (bases 1 to 5720)
AUTHORS Mizuno,C.M. and Ghai,R.
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Rohit Ghai
Universidad Miguel Hernandez, Evolutionary Genomics Group,
Laboratorio de Microbiologia; Ctra. de Valencia, s/n, San Juan de
Alicante, Alicante 3550, Spain
REFERENCE 2
AUTHORS Mizuno,C.M., Rodriguez-Valera,F., Kimes,N.E. and Ghai,R.
TITLE Expanding the Marine Virosphere Using Metagenomics
JOURNAL PLoS Genet. 9, e1003987 (2013)
REMARK Publication Status: Online-Only
DOI:10.1371/journal.pgen.1003987
COMMENT URL:http://egg.umh.es
##Genome-Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.03
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5720
/clone_lib="MedDCM-OCT"
/collection_date="2007-10-15"
/country="Spain"
/db_xref="taxon:1407671"
/environmental_sample
/isolate="uvMED-CGF-C1-MedDCM-OCT-S23-C198"
/isolation_source="metagenomic fosmid library constructed
from the 0.2-5um-size plankton collected from the deep
chlorophyll maximum in the Mediterranean Sea off the
coast of Alicante, Spain, 50m below sea surface"
/lat_lon="38.4 N 0.13 W"
/mol_type="genomic DNA"
/organism="uncultured Mediterranean phage uvMED"
CDS 1170..3959
/codon_start=1
/product="putative endosialidase"
/protein_id="BAR22607.1"
/transl_table=11
/translation="MALQQLRSSTANKRPTAAAMSDGQLAVNTNATNPGLFFKDADGS
VRKVGPVFIGSSAPNSSPASGGSTGHAVGEQWLDNTGGVYVLKIWDGTAWRSESGTFV
DASGDNMTGNLTLGSTNIVLNASNGNITSVGSATFNSSIQSGEYASGAAGAIQIFNNT
ASTQAFKIGNTTNGSNIAMKSDGSASFASTVTSGSTTGRGQFLGTCPSSVVAASADAF
VASYDGSSVAQIKYDGSATFDGTVAVGNTITGSSSVDGATIYDNGTVYLSRSGANNLI
VGRQTGTSGIKVTINSDGSATFAGDVQVGDAPDVSAQYGVEIETLGRIDVRRSDPGDI
TFASYSNTGTSPAAFIRGNGSAEFAGFIRSTNGNGAAFLGASTTAGLALTNSGGSTSA
SILYDGGASFGNTSGGSSGTGGLQFSVSNGQLDLVNTNSGSFITAYNRNSTSQVFSVS
ADGSGTFAGNVFGNRIFARSDTDVDTLVVGTKTGTSAEQGAAIIKNDGSATFKAPSGS
GVEVQTVGGNEGSKFPFVGKNTSGTTTFSVNGDGDATFRSTVSSGSSDRRGQFNAQCP
SSVVATSAGCFVAGYNGSTVINMKYDGSATFAGGITSQNTILSNRTGSTQTAFQATLS
GATKVNITAGGAATFDDQVQSNKNDGWAFEANATFQSGMGAYRSRSNGPGASNTYHLY
ATSSDNKEVVIRTDGSATFAGQVGIGISSPDGVTKLHVNNGTSDTAGGANSIGVGGSG
VGLFATRITNTGGNFAFDRIYAGIWSQALSINRQTGAVAIAGSLSKGSGSFKVSHPLS
SKTETHYLVHSFIEGPQADLIYRGYVDLVDGQATVNIDTAARMTEGTFEALCANVSCF
TSNESDWTAVKGSVTGNVLTIIAQDSTATSKVSWMVVGERKDQHMLETDWTDANGRVI
TEPLKLVDETDSAES"
CDS 4042..4377
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22608.1"
/transl_table=11
/translation="MANTYTWKITKLYRQTSDGFAHTADFQVIGASDQSDDAGIPYNA
TFQNQATLERPETLVDFEDLAESALVAAIQAQLGAEEVTRIETAIDGFISEAITPTQA
SGLPAAWSA"
CDS 4377..4568
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22609.1"
/transl_table=11
/translation="MQRPDPMIPSKPGAEDIQAMSNRQAWLEELFLLDGRDQISHPQH
GLFTDLARKYQNLQSTDGY"
CDS 4616..4954
/codon_start=1
/product="putative long tail fiber protein"
/protein_id="BAR22610.1"
/transl_table=11
/translation="MSISPGTYNFALQRRADWSVLLQFKDSNDAAISLVGATVAAQAW
DKPRSNKYADFGVAYTNRANGQVTISLSDTDTTTFPDELYYDVLVTDSTGRKDYYLEG
VIVVEQGYTT"
CDS 4951..5184
/codon_start=1
/product="hypothetical protein"
/protein_id="BAR22611.1"
/transl_table=11
/translation="MTAVNVTNVKNKVSVTTSGTTTVVTATTAGPQGAPGDFTLDQGA
KVDGSLIYYDATAASFKADTVNTTETLTDGGNF"
BASE COUNT 1411 a 1382 c 1487 g 1440 t
ORIGIN
1 gtcatcgtta acggtgaagg gctccgcatg gataccaaca ccattgaggt tgataatgac
61 gtaacagcga gtacggccca ctttgtcgtc acgtacaacg ccaaaggtct gataactggc
121 ggtcgtgcgc taaccagtgc tgacttacca gtcgctacat catctgctgc tggtgcggtc
181 attcccggca caggactaag tgttgacgga tccggcaaca taaatcacac caatgttgtt
241 acagctggaa cctttgagaa ggtcacgatt gacgctcaag gtcacgtcac ggttggtgcg
301 gatctagaag ctgcagacat cccagcgatt gatgccagca agattacgtc tggaacgttt
361 acgtcagcac gtcttgcaac aggtgcggta actgccgaaa aattggcaga ttcatccgtc
421 gccaagtttg gcggtgcagg cgcaacagac aatatcgtcg tttttccggc tgcggacttt
481 aaaggtcagt tcttctttga cgaaaagaac gaagacctct acatccatac gggcaactcg
541 ttccgcccca tcaccgtcat cagcggcaac ctgattctcg ctggaacgta taacgccagt
601 acaaaccaac tcgcaaccat tacgactcag ggcagcgcag ctggttttag cgttggagcg
661 gcactacctg cacctgccgc aagcaacctc aattattacg tggttgttag tgagagtggt
721 acgggatctg gttcagcgcc tgctgtgcag cttgcaccac cagacatgct catctcgatg
781 gggtcgggtg gaacctatag cttgtctgac gttagtaacg ccattgcggg tcagattgct
841 gccaacattg cctttacacc gtttggtggt ctgaacagca ctgatgtgca ggccgcaatt
901 caggagttgg ataccgagaa gctgcgtctg gatggcggct tgatgaccgg taatttgcag
961 cttgctacta atgtgtcgct ggtttttgaa ggcagcgtgg acgacgagtt tgaaactgcc
1021 tttacgattg ttaacccaac ggcggaccgg tctgtgcagc tgcctgattt atctggaacg
1081 gtggctttga cgagtcagtt ggacgacggc agttactagg gactaaactc agcgaagtta
1141 actccggccc ttttctgggg cgttaaggaa tggcacttca acagcttcgc tccagcactg
1201 ctaacaagcg ccctactgca gcagcgatgt ctgatggcca gttggccgtc aacacgaatg
1261 ctacgaatcc aggtctgttt ttcaaggatg ctgatggcag cgtccgtaag gttggacctg
1321 tttttattgg gtcttccgct ccaaactcaa gccctgcatc tggcggttct acgggtcatg
1381 cggttgggga acagtggctc gacaatactg gtggggtata tgtactaaag atttgggacg
1441 gcactgcatg gcgcagtgag tctggaacgt ttgtcgatgc aagtggcgac aacatgacgg
1501 gcaatcttac gctcggcagt acaaatatcg tattgaatgc atccaacggc aacatcacct
1561 cggtcggcag cgccacgttt aactcatcaa ttcaatctgg cgaatacgca tcaggtgcag
1621 ctggcgctat tcaaattttt aacaacactg cgtcaacaca agccttcaaa attggcaata
1681 ccactaatgg ctcaaatata gccatgaagt ctgacggcag cgcgagcttt gctagcacag
1741 taactagtgg ctctactact ggacgaggtc agttcttagg aacctgtccg agtagtgttg
1801 ttgccgcttc tgctgacgcc tttgttgcca gttacgacgg gtctagcgtt gcacaaatta
1861 aatacgacgg cagcgccacg tttgatggca cagtggctgt cggcaacaca ataactggtt
1921 cttcaagtgt cgatggcgca actatctacg ataatggcac tgtctatctt tcacgttctg
1981 gtgctaacaa ccttattgtt ggtcggcaga cagggacttc tggtattaaa gtaactatta
2041 actccgacgg cagtgccacg tttgctggtg atgttcaagt tggtgatgct ccagatgtct
2101 cagcacaata tggcgttgag attgaaactc ttggacgtat tgatgtcaga aggtcggatc
2161 caggcgatat aactttcgca tcttattcaa acactggaac ttctccggca gcatttataa
2221 gaggaaacgg cagcgccgag tttgctggct ttattagatc gacaaatgga aacggtgcgg
2281 ctttcttggg cgcatcgacc actgcgggct tagcacttac aaattcaggc ggaagtacat
2341 ccgcaagtat actttatgac ggcggcgcct cgtttggcaa tacttcaggt ggcagcagtg
2401 gcactggtgg gctccagttt tcagtatcta atggtcagct tgaccttgta aataccaaca
2461 gcggcagctt catcactgct tataaccgca attcaacttc tcaagtcttt agtgttagtg
2521 cagacggcag cggcacgttt gctggtaatg tttttggtaa tcgtattttt gctagaagtg
2581 atactgatgt tgacacacta gttgtcggca caaagactgg aacatcagca gagcaaggtg
2641 ccgcaattat taaaaacgac ggcagcgcca cgtttaaggc accatcagga agtggagttg
2701 aggtacaaac tgtaggcggc aacgagggaa gtaaattccc ctttgtgggc aagaatacgt
2761 ctggaacaac cacattttcg gtgaatggag acggcgatgc cacgtttaga agcaccgttt
2821 cttctggctc atcagatcgt cgcggtcagt ttaatgctca gtgtcctagt agcgttgtag
2881 caacttcagc tggatgtttt gttgctgggt ataatggcag taccgttatc aacatgaaat
2941 atgacggcag cgccacgttt gctggtggca ttacatcaca aaacaccatt ctttccaatc
3001 ggacaggttc aactcagaca gcatttcagg caacattatc tggcgcaact aaagtaaata
3061 tcactgctgg tggtgctgcc acgtttgatg atcaagttca atcaaataaa aacgatggtt
3121 gggcatttga agctaatgct acgttccaga gtggaatggg tgcttataga agtaggtcaa
3181 acggtcccgg tgcttctaat acctatcacc tctatgctac atcctctgat aataaagaag
3241 tggttatcag aactgacggc agcgctacgt ttgctgggca ggtcggtatt ggaatttcgt
3301 cgcctgatgg cgtaacaaaa ttacatgtta ataacggaac ctcagacacc gcaggtggtg
3361 ctaacagtat cggagtaggt ggctcgggtg taggtctttt tgctacacga ataacaaaca
3421 cgggcggcaa ctttgctttt gataggattt acgcaggaat ttggtctcag gcactgtcaa
3481 taaacagaca aactggagct gtagctattg ctgggtcttt atccaaaggg tctggctcat
3541 ttaaggttag tcaccctttg tcttctaaga cagaaacgca ttaccttgtt cactcattta
3601 tcgaaggacc gcaggctgat cttatttatc gtggatatgt tgatttggtt gatgggcaag
3661 caacggttaa tatcgacacc gctgctcgga tgacagaagg aacatttgaa gcactttgtg
3721 ctaatgtctc ttgttttaca agtaatgaat ctgattggac tgctgttaag ggttcagtta
3781 caggcaatgt gttaacaatt atagctcaag actcaacagc aacaagtaag gtttcttgga
3841 tggttgttgg cgagcgcaag gatcagcaca tgcttgaaac cgattggacg gacgcaaatg
3901 gtcgcgtaat cacagaacca ttaaaacttg ttgatgagac ggattcggct gaatcctagt
3961 agtcctactt accagcggtt taccgccccg tgacatcgcg gggctgctcg tttacactca
4021 ccctcgtaac ccatttgcat catggccaat acctacactt ggaagatcac taagctgtat
4081 cgccagacca gtgatggttt cgctcatacc gctgattttc aggtaattgg agcgagcgac
4141 cagtctgacg acgctggcat tccctacaac gccacgttcc aaaatcaagc cacgttggag
4201 cgtcctgaga ctttggttga ttttgaagat ctagctgaat ctgctcttgt tgctgctatt
4261 caggctcaac ttggcgcaga agaagttacg cgaatcgaaa cagctatcga cggcttcatc
4321 tctgaagcga ttacgcctac tcaagcaagc ggcttgccag ctgcttggag cgcttgatgc
4381 aacgtcctga cccgatgatt ccgtctaagc ctggcgcgga ggacatccaa gcgatgtcta
4441 accgccaagc ttggctggaa gagttgtttc ttctggatgg ccgtgaccag atcagtcatc
4501 cacagcatgg actgtttaca gatttggcac ggaagtacca aaacctgcag tccactgacg
4561 gttactgaag gtgcttcgtg gcgaggggcg ctaaactcta cggaggaggt gccctatgtc
4621 cattagccct ggaacgtata atttcgccct ccagcgacga gccgactgga gtgtgttgct
4681 tcagttcaaa gacagcaacg acgctgcgat cagtttagtt ggagcgacgg tagccgccca
4741 agcatgggac aagccacgtt ccaacaagta tgcagacttt ggggttgcgt acaccaaccg
4801 tgccaatggt caggtcacga tcagtctgtc ggacactgac acgactactt tccctgacga
4861 gctgtactac gacgttcttg tcacagacag cacaggccgg aaggactact acttagaagg
4921 cgtgatcgtg gttgagcagg ggtacacgac atgacggcag ttaacgtaac gaacgtcaaa
4981 aacaaggttt cagtcactac gagtggaacc actacggtcg ttactgcaac gactgctggt
5041 ccacagggcg ctccaggtga tttcacactg gatcagggcg ctaaagtaga tgggagtctc
5101 atttactacg acgccactgc agcctctttc aaggctgaca ccgtcaatac aactgagact
5161 ttgacggacg ggggcaattt ttgacccctt aacacccacc ccccgcattt ctgagccatg
5221 acgatccgta ttaagcgcag ggcagcttct ggtagttctg gagcgccaag ctcattggcc
5281 aacgccgaat tggcgtactc agaggtcgat aatatcctgt actacggatt tggtacaggc
5341 ggtgcagggg gctcagcatc ttctatccca gctattgctg gaacgggtgc atttttaggg
5401 cttgctggaa cgcaaactgt taccggcaac aaaacgttta gcggcactgt tgctcttggt
5461 ggttccgcta ccgcaacaac gcctagcagc ggtgacgaca gcaccagcgt tgcaaccact
5521 gcctatgtgc agggtgaagg cttcctgact ggcaacgaaa caatcgcgtt cagtggagca
5581 gctactggtt ctggcacaac tagcgttacc ctgacgcttg caaatagcgg tgtttctgct
5641 ggtacgacca gtggcgtcac ggtcaacgct aagggcctga tcacaggtat cacggcactt
5701 gtggccagtg atattccttc
//