LOCUS       AM887882                1342 bp    DNA     linear   PLN 15-FEB-2012
DEFINITION  Coix lacryma-jobi chloroplast partial rbcL gene for
            ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit,
            specimen voucher G. Besnard 72-2006 (G).
ACCESSION   AM887882
VERSION     AM887882.1
KEYWORDS    rbcL gene; ribulose-1,5-bisphosphate carboxylase/oxygenase large
            subunit.
SOURCE      chloroplast Coix lacryma-jobi (Job's tears)
  ORGANISM  Coix lacryma-jobi
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Coicinae; Coix.
REFERENCE   1  (bases 1 to 1342)
  AUTHORS   Christin P.A.
  JOURNAL   Submitted (27-SEP-2007) to the INSDC. Christin P.A., Departement of
            Ecology and Evolution, University of Lausanne, Biophore, 1015
            Lausanne, SWITZERLAND.
REFERENCE   2
  AUTHORS   Christin P.A., Besnard G., Samaritani E., Duvall M.R.,
            Hodkinson T.R., Savolainen V., Salamin N.
  TITLE     Oligocene CO2 decline promoted C4 photosynthesis in grasses
  JOURNAL   Curr Biol 18(1), 37-43(2008).
   PUBMED   18160293
REFERENCE   4
  AUTHORS   Aliscioni S., Bell H.L., Besnard G., Christin P.A., Columbus J.T.,
            Duvall M.R., Edwards E.J., Giussani L., Hasenstab-Lehman K.,
            Hilu K.W., Hodkinson T.R., Ingram A.L., Kellog E.A., Mashayekhi S.,
            Morrone O., Osborne C.P., Salamin N., Schaefer H., Spriggs E.,
            Smith S.A., Zuloaga F.
  TITLE     New grass phylogeny resolves deep evolutionary relationships and
            discovers C4 origins
  JOURNAL   New Phytol. 193(2), 304-312(2012).
   PUBMED   22115274
FEATURES             Location/Qualifiers
     source          1..1342
                     /organism="Coix lacryma-jobi"
                     /organelle="plastid:chloroplast"
                     /mol_type="genomic DNA"
                     /specimen_voucher="G. Besnard 72-2006 (G)"
                     /db_xref="taxon:4505"
     CDS             <1..>1342
                     /codon_start=2
                     /transl_table=11
                     /gene="rbcL"
                     /product="ribulose-1,5-bisphosphate carboxylase/oxygenase
                     large subunit"
                     /EC_number="4.1.1.39"
                     /db_xref="GOA:B0BCQ0"
                     /db_xref="InterPro:IPR000685"
                     /db_xref="InterPro:IPR017443"
                     /db_xref="InterPro:IPR020878"
                     /db_xref="InterPro:IPR020888"
                     /db_xref="InterPro:IPR033966"
                     /db_xref="InterPro:IPR036376"
                     /db_xref="InterPro:IPR036422"
                     /db_xref="UniProtKB/TrEMBL:B0BCQ0"
                     /protein_id="CAP09168.1"
                     /translation="SVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQLGVPPEEA
                     GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGDPDQYICYVAYPLDLFEEG
                     SVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYAKTFQGPPHGIQVERDKLNKYGRPL
                     LGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYK
                     AQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCR
                     DNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITL
                     GFVDLLRDDFIEKDRSRGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQ
                     FGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREGNEIIKEACKWSAELA"
BASE COUNT          372 a          260 c          328 g          382 t
ORIGIN      
        1 aagtgttgga tttaaagctg gtgttaagga ttataaattg acttactaca ccccggagta
       61 cgaaaccaag gatactgata tcttggcagc attccgagta actcctcagc tcggggttcc
      121 gcctgaagaa gcaggagctg cagtagctgc ggaatcttct actggtacat ggacaactgt
      181 ttggactgat ggacttacca gtcttgatcg ttacaaagga cgatgctatc acatcgagcc
      241 cgttcctggg gacccagatc aatatatctg ttatgtagct tatccattag acctatttga
      301 agagggttct gttactaaca tgtttacttc cattgtgggt aacgtatttg gtttcaaagc
      361 cttacgcgct ctacgtttgg aggatctacg aattccccct gcttatgcaa aaactttcca
      421 aggtccgcct cacggtatcc aagttgaaag ggataagttg aacaagtacg gtcgtccttt
      481 attgggatgt actattaaac caaaattggg attatccgca aaaaattacg gtagagcgtg
      541 ttatgagtgt ctacgcggtg gacttgattt taccaaagat gatgaaaacg taaactcaca
      601 accatttatg cgctggagag accgttttgt cttttgtgcc gaagcaattt ataaagcaca
      661 agccgaaacc ggtgaaatca agggacatta cttgaatgcg actgcaggta catgcgaaga
      721 aatgattaag agagctgtat ttgcaaggga attaggggtt cctattgtaa tgcatgacta
      781 cttaacagga ggattcaccg caaatacgac tttgtctcat tattgccgcg acaacggcct
      841 acttcttcac attcaccgag caatgcatgc agttattgat agacagaaaa atcatggtat
      901 gcatttccgt gtattagcta aagcattgcg tatgtcgggg ggagatcata tccactccgg
      961 tacagtagta ggtaagttag aaggggaacg cgaaataact ttaggttttg ttgatttatt
     1021 gcgcgatgat tttattgaaa aagatcgttc tcgcggtatc tttttcactc aggactgggt
     1081 atccatgcca ggtgttatac cggtggcttc agggggtatt catgtttggc atatgccagc
     1141 tctgaccgaa atctttggag atgattccgt attacaattt ggtggaggaa ctttaggaca
     1201 tccttgggga aatgcacctg gtgcagcagc taatcgtgtg gctttagaag cctgtgtaca
     1261 agctcgtaac gaagggcgcg atcttgctcg tgaaggtaat gaaattatca aagaagcttg
     1321 caaatggagt gctgaactag cc
//