LOCUS AM486538 10280 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X199330.5, whole genome shotgun sequence.
ACCESSION AM486538
VERSION AM486538.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10280)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10280
/organism="Vitis vinifera"
/chromosome="10"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(1301..1495,1654..1722,1769..1870))
/locus_tag="VITISV_007759"
/product="hypothetical protein"
/note="weakly similar to EMBL:AP008213"
/db_xref="InterPro:IPR010399"
/db_xref="InterPro:IPR018467"
/db_xref="InterPro:IPR040390"
/db_xref="UniProtKB/TrEMBL:A5C909"
/inference="similar to DNA sequence:EMBL:AP008213"
/protein_id="CAN84091.1"
/translation="MEMGRGSPQEQQQQQQLTIFYDGRVCVCEVTELQGLFMNPADQV
FLWAVVPFGYMYEARAIILTASREVETKTPTASDVTMVSPSLQSQLYSPTGLSMKRSL
RSFLQKRKNRIEATSPYGH"
CDS complement(join(4716..5412,5806..5996))
/locus_tag="VITISV_007760"
/product="hypothetical protein"
/note="GO:0003677 GO:0003723 GO:0003682 GO:0016740
GO:0003964 GO:0000785 GO:0005634 GO:0015074 GO:0006333"
/db_xref="GOA:A5C910"
/db_xref="InterPro:IPR012337"
/db_xref="InterPro:IPR036397"
/db_xref="UniProtKB/TrEMBL:A5C910"
/protein_id="CAN84092.1"
/translation="MVDLKREGLQHDPMVKNLIVLAHEVKTKRFWVKDDLLYTKGKWL
YVPKWGNIRKNLIKECHNTNSSSLLDRSFTFSISFHPQTDGRTKRMNXLLELYLRYFA
STNQKDWAKLLDVVQFSYDLQMSETTNKSLFELAMGXQPLSPHTLVIGYTRRSPTAFK
LAEEWHEQADIARSYLDKAAKKMKKWADMKRCHTKYKVRDTVFVKLFPQQFKLLRQVH
KGLVRRYEGPFPILGEVDKVSYKVELPPRLKIHHVFHVSYLKLYHENKDNPSRGMFKR
APTMVVTFYDKEIEYTIXD"
CDS complement(join(6486..6968,7721..7864))
/locus_tag="VITISV_007761"
/product="hypothetical protein"
/note="GO:0003723 GO:0003677 GO:0003964 GO:0003682
GO:0008270 GO:0006278 GO:0015074"
/note="partially similar to EMBL:DP000010"
/db_xref="InterPro:IPR000477"
/db_xref="UniProtKB/TrEMBL:A5C911"
/inference="similar to DNA sequence:EMBL:DP000010"
/protein_id="CAN84093.1"
/translation="MATHETPRVEVPKPHMFNGKRDAKELDNFLWHKEMYFEAITLTD
EATKIAKEDEPKTTCVTRYDSYEFLVMPFNLTNALAMFCTLMNKIFNPYLDKFVVVYL
DDITIYNSTLKKHIRHLRKVFKILKQNKLYVKKEKCSFAKEXXSFLXHHIKDGKLMID
DNKVKTTQEDPSTKVPQLRFFLSLVNYYQRFIKGYSTKVAPLTXILKK"
BASE COUNT 3319 a 1771 c 1685 g 3449 t
ORIGIN
1 taacttttat tttttatttt cttctaaatt atcaaattaa ctattcatcc cctatttagt
61 tttaattaat tatttatttt cattaatttt gagttataat ttattttttt gttwaacatc
121 catattaagg tcatgtttgg ttgtttgaat atatcataaa ataaattaaa agatgagata
181 atatatctta tcgcatgttt gaatgacaat ataatataaa atctcatcat ttatatcata
241 tttcatttta aattaaatat agaataagat aaatagtgag atatattgtt ttattttctt
301 ttttatattc ttggaatata acaattgatc ctcaattaaa tatataattt acatatctta
361 tgaataatac atttccattt attatcaatt ttcttcattt taattttttt tttatgctat
421 tgattttgta aaataaataa ttttgattaa aaaaaagtta aatttatagt tctttaaaac
481 ataatgtaaa atagtactat atatgcatta tttaatataa tatttaatat gcaaattatt
541 tttctatatt tagcaataga agaatatgat attttattta taaattttaa ataatcatga
601 atactattaa taaagtaata acaagtttta tttcttgtta aataataaat tattgaacaa
661 ttttcaaata atattaacct gtgatagatt tcattttctt gttaattttt tttcaataaa
721 tttttatttt aaataaatat tgaacactga aatacartat gtttttcatt ctatttttct
781 gttctttttg taagycaaat aaaagaatga catgatgttt aaaaatatta gaagcagtat
841 aaaatattta caataaaaaa taagtgatag agtgaagttg tgaatatcaa tagaagacat
901 acaagacttg aataaataag acaaaaaaaa aaaaacaata aaattaagat atcggttatt
961 ttgatttaac atgacttaaa attattttta aatttaaatt ataatattaa attattttat
1021 taataatatt taatcccttt aaccacttaa attaaattac aaaatcatat gaagtgatga
1081 aattgatttt gcaaacatcc tcttaataac aagcacaatt aagataggtg aaatgtaaag
1141 actaaggaat caaagggtat ttttaattaa gaaggtacaa attttcccat tggaaaccct
1201 ggttcataat ttacatgtgc tttgaatggg aggaaattgt acaagatgag tcgtctctcc
1261 actgaatcaa agtcgttgga tagtaayatc tgagaagaga ctaatgaccg tatggggagg
1321 tggcttcaat cctatttttt cgcttctgga ggaagcttcg cagcgatctc ttcattgaaa
1381 ggccagtagg gctgtacagc tgggattgca gagatggcga gaccatggtc acgtctgagg
1441 cagttggggt tttcgtctcc acttctctac ttgcagtaag tattatggct ctagcctgca
1501 atatactaac aaacttatca taattaatag aaagaagctt ctgtcctaat taataagtca
1561 tatatgacaa agagtacttt tgcccatacg acaaatggca tagcattgaa attgaattcc
1621 ctaatgatat actgagtcga actcgggagt tacttcatac atatatccaa atggtacaac
1681 agcccacaag aagacttgat ctgcagggtt catgaatagc ccctggaaga caagacccag
1741 acccagaccc agacccgtat gtgcatacct gaagctctgt aacttcacat acgcaaaccc
1801 tcccgtcata gaaaatggtc agctgctgct gctgctgctg ctcttgtggg cttcctcttc
1861 ccatctccat ccttcagttc ccaacacaaa aaccaaacaa atcaggacaa aagaagtgca
1921 tatatacaaa ctatcaaccc ttgtgtcaga ggcagtgaag tactgtctcc ggggctctat
1981 gtgcatatat gaataggtaa aagataaaga aacccagaaa gagagactat attacatcat
2041 tttgtgacgg taagcagtgg agggaagaag gcttagttcc aaattgcagt tcctgctctt
2101 catctttgat ccttgaaggg ctgaaacctt gtgttaattg cttgaatatt tggagtgcag
2161 gaagagaaat gaatggggat gaaggaaggg taaagacggg atgcttctat atatatgcca
2221 catgtgaatg aaatatcaaa tatcatatgg taggaagagc cacaccgcac cgcaccacac
2281 cacaccagtg gtaccgtttt taatgagttg aacgcgaaat ccacacaaga aacctaaaga
2341 caaaaggtat tggcattaaa ttatcggcat gtgaaacacg atattcacca caccacacca
2401 caaccacctt ttttgctgca tattttttgt cattatcgag tatcatgcat tcatacccct
2461 ccttccttgt ccacacgtat ttcccatttt gttttatttt tctctgaaaa acctcttttc
2521 tccttccatt tgcatcaaaa tatttatttt aacccttaaa taaattcaat gcatcaatca
2581 taggaacatg actctaattc tagtcccaca cttgggaagt gtgacatcta atccaatcta
2641 aattaaataa tactattttt ccttcccttt aatttactgc attattttac catttgcttt
2701 accgaatgtt aaaaaaaaaa agttattacc atatattaaa tgtaaaaatt tcctattatt
2761 aatttatcat ttaaatatat ggtaaattat aaatatatat tcaacaagta atattattag
2821 cccaatgatt cctccattta atgttttgat gataacaaga aaaaatgtat ctttgaagac
2881 tcaatatgtt tagaaacaaa tgtaagatga atttcatgag tgcatcgagg ataaaacttt
2941 ttttgtacat tttcaaatgt ctttcattca tacctatgtt agtttaaaag tgatcttaag
3001 tttctaaaaa tgaatgaata tatgtttcac tttaaaacct taggcttaat tctttaaatt
3061 tttaaacgaa atgttcaagt tactagaaga ataaaaatta aaacaaaagc tttttggttg
3121 aattttggtg cataaaggtc aagttttgag ttgtataaag gtaatatttg atgtatgggc
3181 tctccatgat ggattggagt gcaatcaaat aatagattaa gttaatgggg agtctataat
3241 aagagaaayg tgaatcgatt aggattgata agggtaaaat gggatatttg attctccatg
3301 attagggggt aagtaaagga attcacaata acaaaaagtg gtaagattga attgattgac
3361 aaagatgaga agaattttgt gayaacgaag aamagtgatg aaagaaatca tgatgttgaa
3421 caaaaatgga gaaacgtgat aaaagtaacc atgatgttga ataaagatgg ctacagacta
3481 cttagggtgt gatgttgagt agagatgata ataggccaag ttyaagacaa ctcacaccta
3541 ttcggacctc acctaaattg tttaaatcag ttcttatccc catttaaaag aaactaaaga
3601 gaggggagac aagtagggaa attttctatg ctaaacgtgt gtygtcaagt ttaaytttta
3661 caagttttaa wtttttwwaa aataattata ttaaaaataa atttaaatta tgaataaaat
3721 gaataatata aattatataa tttattttga tgagaactaa attttttatt ttatatacat
3781 taaaaaaatg agaaatgaaa aaaattaaat tattttttat ttaattatat aataataaga
3841 gtataaggca atascaaatt ggttcacccc cactcaagtt tcaaaagaaa atttcttaaa
3901 tccaatttta acttgtttaa gcattcaaca ttctattagg agcaatcgaa aaaacttatt
3961 tcattgtcat ccttggacgg gtacttgaaa atagtcaccc attttttatt ttaaagccaa
4021 agaatgagaa tggcaaggga aataagtgat gatgtggcta gtacttaaat gttttaatct
4081 caaaagttca caaaaaataa aaggttaaat ctagttaaag tttacaagaa aaagaaggtt
4141 aaattgatga tgaaggttac aacaaggaca aactaatrtc acagacttag tctttttcta
4201 agctygtgta acacttagac aagtcaagat gcttgatctt gctaagttag ctttattctc
4261 tygatgctta gcttgctagg ttaagatgct tacgayttgg aagctttara aggtgtagta
4321 ggcaactytt gaagaatgaa agcttttatt gttcaaagga agctttacaa gtgcttcgga
4381 actcacttgc ttggactcct ctcatgcctt ccatcatagt gtaaggatat gtggacatct
4441 ctaggcatct ctagaagttt ttatactctt tctaccaatg acttagtgta gatggctcaa
4501 agagtctcca aaagcttccc ayctcctaca taagcccatg gggagggtta tttgtgcatc
4561 atgtgacact tacccccacc taagctatag atatcctcat cgcgccttcc gcccaaaatc
4621 actcaatttg gctcctagct agcctygctc tctagtattc cctwctattt caccaagtac
4681 tccatagccg gagacatgcc ttgtctcctt ttgactcagt ctrctatggt gtactctatc
4741 tccttatcat agaaggtcac aaccattgta ggtgccctct taaacattcc tcggcttgga
4801 ttatctttgt tttcgtgata tagtttcaag taactcacat ggaagacatg atgaatcttt
4861 aaccttggtg gcaactcaac tttgtaggac actttgtcga cttccccaag tatgggaaat
4921 ggtccttcat acctcctcac aaggccctta tgcacttgcc ttagcaactt gaattgttga
4981 ggaaagagct tgacaaacac tgtgtctcta accttgtatt tcgtgtggca tcgcttcatg
5041 tcagcccact tcttcatctt cttagcggcc ttatccaagt atgagcgtgc tatatcagct
5101 tgctcatgcc attcttcagc taacttgaaa gccgttggac ttctccttgt ataccctatc
5161 actaatgtgt gaggactcaa tggttgctrc cccatggcta gctcaaatag gcttttattg
5221 gttgtctcac tcatttgcaa gtcgtatgag aactggacca catctagcaa cttagcccaa
5281 tccttctggt tggtactygc aaagtacctt aagtataact ctagtaagam gttcattctt
5341 ttggttcgtc catcygtttg tgggtgaaag cttatagaga aagtgaagct tcgatctaat
5401 aagcttgaag agyttyattt aaaattttcy tgtgaactgt gggtcacgat cactaatgat
5461 atacttagat aactcccaat acttgaccac gtgtttcaag aatagccttg tcatttcttc
5521 tgtggtgaag tttgtaggga ctgctatgaa ggtagcgtac ttagagaaca tgtccactac
5581 cactatgatc gagccataac cctccaaatt aggtagccca atgataaagt ccatagtgat
5641 gctctcccat ggatgctttg ctatgggtag tggctccaac aggcctctaa gctatcgttg
5701 ctttactttg tcttgttggc acacaagaca agtcctcaca taagcctcaa ctttatccca
5761 catctgaggt taatagtaag tcgacttaag tagttccaag cgtacttggt gttatggcat
5821 tccttgataa gatttttcct tatattcccc cacttaggca cgtagagcca tttacccttg
5881 gtgtatagta ggtcgtcctt cacccaaaac cgcttagtct ttacttcatg agctaagaca
5941 atgaggtttt taaccattgg atcgtgctgt aacccttccc ttttaagatc caccatatct
6001 tcttggggct ggctaatcat ggaagctagc tttaccttac gacttagggc atcgatcaca
6061 tgattaacgt ttcctaattt atactccaat gtttattcga actcggccaa gaagtcttat
6121 cacctagctt gcttagggct tagattcttt tatgtttgaa agtagctagt gacaacattg
6181 tyggttttca ctatgaagtg agaccttaga agataatgtc ttcaggtgtg caagcaatgg
6241 ataatgacag tgattttctt ttcttrtatc gtgtagcgcc tctctgtgtc gttgggtttg
6301 caactttcaa aggctatcag atgcstattt tgcattagaa ttgccctaat agcgaagtct
6361 gargcatccg tgtgtacctt aaataactta gaatgctcgg gtagtgccaa cactggctcc
6421 ttaatcacat tcttctttag atcctcaaag tcttgccrac acctttcatc tcattcccat
6481 gccttttact tcttgagaat aycggtgagt ggagctacct ttgtagagta acccttgatg
6541 aatcgctggt agtagttaac caagctaagg aaaaacctta gttgaggtac tttagtagat
6601 ggatcttctt gggtggtctt caccttgttg tcatctatca tcagcttgcc atccttgatg
6661 tgatgcycta agaagctcay ccmttcctta gcaaatgaac atttctcttt ctttacatat
6721 aacttgttct gctttaggat cttgaagacc ttccttaggt gccttatgtg tttcttcaag
6781 gtgctattgt agatggttat gtcatccaag tataccacca caaacttgtc tagatatgga
6841 ttgaagatct tattcatgag tgtgcagaac attgctagtg cattggtgag attgaagggc
6901 atcactaaga actcatatga gtcgtatcgg gtcacacatg tagtctttgg ctcgtcctcc
6961 ttcgcaatct ttacttagta gtagcccgat ctcaagtcta gcttcgtgaa gtatcttgcc
7021 ctaccaagtt gatcaaatta gtcaacgatg agcagaatag gggacttgtt ctttattgtc
7081 accttgttga gtgcccgatg gttaatgccc atccttaggg aaccatcata cttcctttga
7141 aataagatcg atgcgccgta gggagcgagg aaataattgg tcctaggcgt gaactccttt
7201 tgtttatcct tgcccttgtc atccttgcca ccaggggcct tacttatcct tctttaagag
7261 tataacccct tgaccccttg tctcccccac ctttaccatg attacccttg tactgtggct
7321 taggcttgga agagtctctt attttgtatt ccaccaagga ctctactacc gccatgtctg
7381 tggttaggtc ttagacacca tgtgtcttca acttttgctc ggcctaactt tgtagattgt
7441 ctatgaaatt gaataatagt ttctcctcaa acatgttagg aatctcaagc attaatgtag
7501 agaattcctt gatgtactca tggatcgaac ctgtgtgctt tagacgcttc atatttttcc
7561 ttgtcaggta aaccacatcc ttaggttaga attgtttttt aatctctcgc ttaaagacat
7621 cccatgtgtc tatggtgcac gtcccttttt ctatatcgca aaaacttcga tgccaccata
7681 tagtagcatt attagtgagg tagatagttg tagtgtgtac cttagtggct tcatccgtta
7741 gtgtgatagc ctcaaagtac atctccttat gccacaagaa gttatctagc tccttagcat
7801 ccctcttgcc attgaacatg tgtggcttgg gcacctccac tcttggtgtc tcatgagtgg
7861 ccatgacctg tactgacact acggtcttat agatgaccaa ctcttgtcga acctcctagt
7921 ctagggcttt catgcgtgca accaaggcct ctacccttga ctccatgcta atcaacattc
7981 tcatgacttt gttttggaaa gacataaact cctcgtgtga cattggctaa acttgtgaga
8041 caagcacacc atcacgaagg tcttagatat gctcacttag atcctctaag cccttttcca
8101 tgccttgctc gatcaagtcc acgccttctc gagtgtccgc catggctagc tccattttgg
8161 atagccttgg ctaaggcatc acgagactta tccttctact attgcctcat gcartagact
8221 cgrtytccct cccacaggtt tgctcactag cctcatccac attggagctc aacatgcttc
8281 cttcactatg ccccattcgt aaacgtgctc tgatatyaat tgtcacggac ttagtatttt
8341 cctaagctcc trcgacactt agacaagtca agacacttga cttgctaagt cggtcttact
8401 ctcccaatgc ttagtttgtt agrctaagat gcttacgact tgaaagtttt agaaggcgta
8461 gtagacaact cttgaagaat graaactttt attgytcaaa ggaaacttta caagtgcttt
8521 ggaactcact tggtgtttag gccaaatgac gtccttactt atttataggc accaatggaa
8581 ctttatggaa ccttggatga ttccttacaa ctcatgaata ttctagaaca ttctacacaa
8641 ttctatgtac aagtctatgt acaaaaatat acaagagact tctagaattt tctaaaaagc
8701 cttagactct tctcatgcct tccaccatag tgtagagatg tgtgaacatc tcttgccatc
8761 tttaaaagct tccacactct ttcyaccaat ggcttattat agatggctct aggagtcttc
8821 aaaagcttcc caccttctat ataagcccat ggggagggtt atttgtgcat catgtgacac
8881 tgaggaggca aaataagatt gaatagattg attgagacta gagagacttt tgtattgaag
8941 gaagagacta attgaataag taaagtttgg aattgaatag tataaatatt atccatatat
9001 atttatatat atgggaaaag ataaatcttt ttgtaataga aagtgaataa ataatttata
9061 attatttttt attatattaa ataaatataa aaattgcatg tcataaatga ataaaattta
9121 aattgtaaac ctaaaatagg tactcaaaat attattcaca caaaaaaaaa aggaattgaa
9181 aacaatatat tggaattgcg agacaaaatt ttaattaatt gtataaaaga actaaaaatc
9241 atttaaattg taaatgtttt attctcaaaa agtattaaga aagaaagaaa aaaaattaaa
9301 gaaaatratt ttcctctgtt tgattatact taagaaaatg taaaatraat aaaataaaat
9361 aaaatataat taaaattaat tagraaatta trtattttta aattatttaa tttttatatc
9421 caagagttaa aatatgttaa atgaattcta cgggtccaca ggcctagaca aagtccatat
9481 tcataaagct tgcaaatcaa ccgttcctac tctgggccta tcgttgtggg ctattccatc
9541 tatgtgctgg tccggatcaa actgaggccc atgtctcggc ccagagaagg caagatcctt
9601 tgctgaccag accaggcaat tgtaatggtg tggaattata atatataaaa atgatgattt
9661 agattttaaa atgatttatt aaaawtaaaa tttttcattt ttaaaaattt caattagaat
9721 tttttatata aaagtagaat atcttataca aaaaacataa atttacttta tatatttaaa
9781 attcattttt agaaatttta aattttgaga tatggatttt ttaaatagtt tttaaaatca
9841 ttacttattt cttatgcaaa aataactatc atttatatcc aaatagacat tttttawtca
9901 agaattgagt atacttattt taataaaaac tgcaaaacat attttgtaat cataaaaaaa
9961 tactttaytc ttaaaaacaa aaaaaaagag aggatatttt ctatgaaaaa aaacttgttt
10021 tatgaagatt gttttaaaaa atattagaaa aaaataaaaa ataattgaaa ataaagtgtt
10081 acatataaat ttatttttaa aaaatatttg aaaatataga aaataagttg aaaacatttc
10141 aagttgtcta ataataataa tagtaataat gtgaatatta aataaggtat gggaaaaaga
10201 aatgttttac ttaaaacaat atcacattag tcgattttaa gtgtgcttaa agttttttgt
10261 caaattatat aaatcatatt
//