LOCUS AM483952 10266 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X063614.6, whole genome shotgun sequence.
ACCESSION AM483952
VERSION AM483952.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10266)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10266
/organism="Vitis vinifera"
/chromosome="9"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS 6730..8460
/locus_tag="VITISV_001807"
/product="hypothetical protein"
/note="GO:0005524 GO:0000166 GO:0005515 GO:0006915
GO:0006952"
/note="weakly similar to EMBL:AP008211"
/db_xref="GOA:A5C6G3"
/db_xref="InterPro:IPR002182"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR038005"
/db_xref="InterPro:IPR041118"
/db_xref="UniProtKB/TrEMBL:A5C6G3"
/inference="similar to DNA sequence:EMBL:AP008211"
/protein_id="CAN83981.1"
/translation="MAFVVEQQIHDELTLVLGVEAQIQSLTDTLRSVRDVLEDVERRQ
VKEKSVQGWLERLKDMAYQMDDVVDEWSTVILQLQIEEAENASMSTKKVSSCIPSPCF
CLKQVTFRRDIALKIKSIKQELHDIASERTNFNFVSSRSEERLQRLITTSAIDISEVC
GRDMDKDTILGHLLGKNCQQKSGLYIVSIVGTRGMGKTTLAQLAYNHTKVKAHFDERI
WFCVSDPFEPIKVCRAIVEALQKKPCNIHDLEVVQQEIETCIAGKKFLLVLHDVCTED
YRLWEQLKNTINCRASGSRVLVTTRNDSVVKMMRTKHPLGELSPEQSWALFHQIAFFE
KSREKVEELKAISEKIADKCKGLPLAIRTLGNLMRLNNKKEEWENILNSEVWQLDEFE
RDISPTLLLSYYDLPPAIKCYFSFCVVFPKDSVIEIDKLIKLWMAQNYLNSNASREME
MVGRDYFEYLAARSFFQDFEKDGDDSIIRCKMHDIVHSFAQFLTKNECCIMNKEGRTN
ISFQKIRNATLNGQQRHPNFVSTYKMKNLRTLLLEFVVVSSIDEALPNLFQHLTCLRV
LDFVRNPSIK"
BASE COUNT 3344 a 1982 c 1866 g 3056 t
ORIGIN
1 ctttttctct gtttcattct ctgtttcatg ctcttgtttg gatgtggcaa aatcaacctc
61 tttactactc aaagtgataa ccgttttaac ttccttcacc attgaagatt ctcccttttt
121 agcctccgct ccatggatgc ccttggaatt ttgataaggt tgagaaggaa agtttccttt
181 ttcttgcact gtgttgaggt tggcaaacct tgagattgaa tcttggagat tatctatctt
241 ctgagataga tcattttgca cttcatccat cattttgttc aatgaactct ctacactgtc
301 aattctttga ctgagatgag cattgatgga tttctgagct ccaacaatgt cttccccaac
361 cttgctaaga ttcactatag cttgttcaag gttcaaggct tgctgaggtg cttgagtagg
421 ttgcttgtac tgaggcagct gtggtttcca agagaaattt ggatggtccc tccaattgga
481 attgtaggtg ttgcaatcac caaacatttc cctcaccact ggaatggtag gacactcttc
541 caccaagtgc tcataagata gacaaatggc acaaggcata gcttgtaatg gtatctgaga
601 ggtggcttgc acttcttgca tcttcttcat ttttaactct tccaatctcc ttgccatagt
661 tgcaatcttt gccttcatgt ctatgccatc attcaaaata tatatctcac ccttagcatt
721 aggttgatac ttcattatcc ccatatctct agcatttggt tcatcccatc ctcttgaaag
781 ttcagccaca taattcaaga agttcatggc tttctctgct atctcgtatt caatatgaca
841 tgcacaacta gcaatttgtg aattaaaaac agagaaaaca aaagaaaaca aaagaaaaac
901 aatttaaaaa aaaaaataag actaaataaa actagctgaa aggtaaacta aaacataaat
961 aaagaaaaat aacaattaaa aagagttagt aaaagaaaag aaaaatcacc aaacttgtga
1021 tgaagatcac aagtkaccyt aatggttgct tcactgtgct tgtggcacct tccccggcaa
1081 cggcgccatt tgattcgact catggtagct taggcgttta aaggcgtatc aacaaattta
1141 taccttgaat actattacta aagtagccaa gctactatag catagtggtt ctaggatcgt
1201 tcactgggaa gggtttcgca aacacaagtg atattcaagt taggaaaata ggtgattttc
1261 ttatggatgt tagctttaaa agaagatgta aatgttttag aaagatttaa actaatctaa
1321 gctaacatta aagactaaaa tgaaagggtg taaaaacaag tttctcaaag ataggatagc
1381 tatgctctgg ctcttatgca aattggaaat ctcaagatag gctcctcgcg ttggggttgc
1441 aactatggtg atgcttgctt cccgaaccgg tatggattta gcaaatcaag ttttaatcct
1501 ttaaaatggc aaaacagatg gtagtgaatt tcatcaatgg ttattcactt tagacttcct
1561 ttgaatggct cgtaagagat aactaatggt ctaaagccaa aagcttacca aatattggca
1621 actcaaagtc attccaggtg ataaactcac atttcaatgg ccattgaaat tggttctaac
1681 ggattaatgc aaaacttgga attgaaaacc tcaccttcca atagctcgta ggagataact
1741 aatggataga aatctaaaag cttatcaagt attggccatt ggaagttgtc caaaggaaat
1801 aaaaaccaaa ctttgcatta atgaaccttt aatgaaaaac gactacctta ccttccaggt
1861 gcgagaaatt tccatgggat tgcatccaag tcatcacata acatccatac tttgagaaac
1921 taaaagtttt agccaatcat cctctgagga aaagccctca gaggctgttt agctactaag
1981 aaaatagaaa tggggaagaa caggagaaga gaaaaataga gcaaagctat gtatagtcta
2041 tatatttaaa tatctatatc tccatccgtc tctgtgtatt ttacaataga tgcacgggaa
2101 tatatataga gaagtttttc caaccttcct aactaagaaa tcttatggtt ggtggattac
2161 aaggagaaga atggaaattt atgaaaaaat atctgaagaa aaaatctaaa agagtcggtg
2221 cacaaatatc ccagtttcgc acgttgcatg gtgacttgcg aaaatttcgc aagttgattt
2281 tgcaacttag aatccacttt cgcacgttga aatccaagtt ttcaagttgc aaaatcactt
2341 tcgcatgttg ggcttcaccg cgaatgcaca actgccatcc actttaaatt tcgcacgttg
2401 gagttccaat ttcgcaaggt gcgaaattgt ccttcaactg gatgcagttg tcttacgaag
2461 gccatatctt ccacatttta actccaaatc atacacggtt kgaagcgttg gatttttgaa
2521 ttcctgagct ttgaaatggt atatagcatg taaaaaatgg actttgggaa gtgctccaaa
2581 agtgcgaaag aagactgcag ctgctgtcct ctgttttctt cactctgttt ttcctctctc
2641 cgttgttctt tccttgcata ctttgagcga ctttggcaaa gggctatgga gctccaaagc
2701 ttggttcttc atgaatttga gcttccaaaa gctttgccat gaactatata cagctctccc
2761 tcattcttgg attgctttgg tgagcaaaaa gctattaaaa acaccaaaac ttaacacaat
2821 ttgattagaa acgattgcaa gggttcttaa catgccaatt gagttaatag gtaataatta
2881 ctactcaaga gtgtttaaaa gagttaatta caagctacaa aatagcactt tttgagtagt
2941 aatcaaggct tcttcttctt agaatcagta ggggaagact cgagccacaa tcctctagca
3001 atgccttcct ctataccata caaagcctat accaaagatc caaaatccgt atggggaaat
3061 cccatcaagt gtagcaaatc tcagctgcaa gcttctcatg atcatgctaa tctgatcctt
3121 ctttgaagga cgatcaataa tctgtgaaat cttctccctc catcgggaga taaatgaagt
3181 gactgactta tttggccttt gtctcaaagc ctctaactct ctcctcgaaa catcaatgac
3241 agtgttaaat gcaaactatc tcaaaaacac ctgggccaag tcgtcccaag tcctacggcg
3301 tgatatatcc aatgaagcga accaacgttg tgccgcacca ctcagggaca tagggaaaag
3361 cataaccatc tgggcctcat ccagtctgtg ggccctcata attgtactat aaagcctcaa
3421 atggatgtga ggacaggcta tgcccttgta tctctcaatc tcgggcatcc taaacttggc
3481 cgatagacta gccactggtg atccatcgaa atcctcccaa gtaataactt cgtctgaaac
3541 cctcatctgt ctcaacctct gctcaagtct atccatacgt gtatgtgggt cctctaaggt
3601 cgggataagt aatgtgacaa gaagcgggac aacctcagtc tgactatgca gagtgaaagg
3661 tataacctgt ggtactgact gactgggcgg aggaggtggc ggtactgtgg tatcgaactg
3721 ggcactctcc tgaactatga cctgttgggc ctgctgtcca tctatcatct gaccaaggtt
3781 agctatagcc tcctggatag aagccatggc tgcggcaaac tggtcaatag taactatttg
3841 tgagtccata tccttctgat ctgatctctg atctgactgg tctgatactc tggtcaatct
3901 acctccaact ctaatccaca aaggtgaatc cagatcgatc aaggtaaatc ctcctaaaaa
3961 tatggaaaca ctagataagg tgcagtacga atgtgactct gtaggaatca actgacaagt
4021 gcgtagaagt aaagcccaaa tatactcaat ctgataccca tctctgatca catcaaaaag
4081 agactacaga agggataact gaacctaatc gtgaccaagg cagctctgaa ggtccacata
4141 tgcacccatg tgtaggaatg aaatcttaat tgggtctagg ttaacttaca aggttgaggt
4201 ggctctatag gtgattacta cccaaaaagt gctattttac acctttaatt cattatcttt
4261 taagcacttt tgtgtagtaa ttctccatct ttattccaat tggcatgtta aggacctagc
4321 aatgacttct aatcatattt gtggctagtt ttagtgtttt gacagccttt tggatcatta
4381 agacaagcca agtaaaggag agaagcaaag agaagcaaag aggaaaagca agcaaagtga
4441 agagaagcaa agaggacagc agctgtagtc ttcttttgca cttttggagt acttcccgaa
4501 gtccattttc tacatgctat ataccatttc aaagctcagg aattcaagaa tccaacgctt
4561 caaaccgtgt acaatttgga gctgaaatga ggaagatatg gccttcggaa tccaactgct
4621 ccaggcttgt gcgaaaattt cgtacgacac cttgtgttgt acgaaattcg cacaacacct
4681 tcaaaattcg catatcccat gcgtggtgcg aattttgctc tgttttttcc gactccactt
4741 tagatatttt cttatgtatt ttttgatgta atttcctttc ttatccttgt aactaaccaa
4801 tcacaagctt ttgcttttgt aaagactata taaggggtgg aaatcacctc ttggaagata
4861 taatagatat tacgttttac acttagaaaa tatacagagc tctctcgttt ctcttttctt
4921 tttattattt tatttttttt ggaagccaaa caacctctga ggatgttttc ccggaggatg
4981 attggctaaa acttttagtt tctcaaagta tggatgttat gtgatggctt ggatgcaatc
5041 ccatggaaat ttctcacacc tggaaggtaa ggtagacgtt tttcattaaa ggttcattaa
5101 tgcaaatttt ggtttttatt tcctttggac aacttccaac ggccaatact tgataagctt
5161 ttggatttct atccattagt tatctcctac gagctattgg aaggtgaggt tttcaattcc
5221 aagttttgta ttaatccgtt agaaccaatt tcaatggcca ttgaaaggtg agtttatcac
5281 ctggaatgac tttgagttgc caatatttag taagcttttg gctttagacc attagttatc
5341 tcttacgagc cattcaaagg aagtctaaag tgaataacca ttgatgaaat tcactatcat
5401 ctgttttgcc attttaaagt attaaaactt gatttgctaa atccataccg gttcgggaag
5461 caagcatcac catagttgca accccaacgc gaggagccta tcctgagatt accaatttgc
5521 ataagagcca gagcatagct atcctatctt tgagaaactt gtttttacac cctttcattt
5581 tagtctttaa tgttagctta gattagtttg aatctttcta aaacatttac atcttctttt
5641 aaagctaaca tccataagaa aatcacctat ttttctaatt tgaatatcac tagtgtttgc
5701 gaaaaccctt cctagtgaac gatcctagaa ccactatgct atagtagctt ggctacttta
5761 gtaatagtat ttaaggtata aattttgttg atacgccttt aaagctaagc taccatgagt
5821 cgcatcaata ggataaaatg ggtggcttaa aggatcccta gaagaagcga tcgtaccctc
5881 cagtggtatg caaccctctg catgcctcca aggagatggg gtgcttccat gcaaggtggt
5941 catcacctcc acacatgcac ttcctcgcat tcccaggggg tttcttaatg gtgaaagctc
6001 tcccatctct caacactcaa ggataatcta aagtgcacaa tgaaggatgt gggtgcatct
6061 gaaaaaccta agatctaaag tgagatagtg aacaaagaca ggcaatcata caatcatgca
6121 ggagcaaggg ttgtcaggca acaagtagtc ataccaagca aataaatatc aaacaatcga
6181 agtcctatct aacatatgtg agagtgaatc atgctaaagt gagcaaaaca atcaagtgat
6241 catccaaggc aatcaaacat tttaagataa caaaccaaac aagcaagcaa atcgaatcac
6301 cttgcctaaa aaaaaagagg taccctctaa tcgacaatta aacgccacat ttttctcaat
6361 tagtgttcaa gcttgatcct caaaatcccc agtggagtcg ccaatttgtg gacccatatt
6421 tttcacgtgc gcccccactc gattggcgag actcgctttt ttatttgtga aaaaattaat
6481 tttggaaaaa gtcagagtca ccacttattt tatttttatt ttaaagggaa aataaaacaa
6541 aaaagaaaaa ccctaaaatg tgactccata atttttggaa aagcatgttt ttgaaaaacc
6601 cgagtctagg tccggggatc aggttactta ctgggaaggt acctctagga gatagcaccc
6661 ctctaagccc taaagatgtc tatactgact aagttgargg aaacgtggca attaaatggt
6721 tgatcatgga tggctttcgt tgttgagcaa cagattcatg atgaacttac tctggttctg
6781 ggtgttgaag cacaaatcca aagcctcaca gatacactcc gatccgtccg agatgttctt
6841 gaggatgtag agcgcagaca agtgaaggaa aaatctgtcc aaggttggtt ggagaggcta
6901 aaagacatgg cttaccaaat ggacgacgtg gtggatgagt ggagcactgt tattctccaa
6961 ttacagattg aggaagctga aaatgcttcc atgtctacga agaaggtaag ctcctgtatt
7021 ccctcccctt gcttttgtct caagcaagtt acttttcgtc gtgacattgc tcttaagatt
7081 aagagcatta aacaagaact acatgacatt gcaagtgaaa gaaccaattt taattttgtg
7141 tctagtagga gtgaggaacg actacagcga cttataacta cctctgcaat tgatatttca
7201 gaggtatgtg gtcgggatat ggataaagac accatattag gccatctttt gggtaagaat
7261 tgtcaacaga aatctggcct ctacatcgtc tccatagtcg ggacaagagg catgggcaaa
7321 acaactcttg ctcaattagc ctacaaccat acaaaggtga aggcccattt tgatgagaga
7381 atatggttct gtgtttctga tccttttgag ccaatcaaag tttgtagggc tattgttgaa
7441 gccctccaaa aaaagccttg taatatccat gatttggaag ttgtacaaca agaaattgaa
7501 acatgtattg ccggaaagaa attccttctt gtgctacatg atgtgtgcac tgaagactat
7561 cgattgtggg aacaactgaa gaacactatc aattgcagag catcagggag tagagttctg
7621 gtgaccacac ggaatgacag tgttgttaag atgatgagga ccaagcatcc attgggggaa
7681 ctgtctccgg agcaatcttg ggcattattc catcaaatag ctttctttga aaagagtagg
7741 gagaaagtgg aagaattgaa agcaattagc gagaaaatag cagacaaatg caaaggcttg
7801 ccactcgcta taagaacttt ggggaatctc atgcgcttaa acaataaaaa ggaagaatgg
7861 gagaatatat tgaatagtga agtatggcag ttagatgagt ttgagagaga tatttcccct
7921 actttgttat tgagttatta tgatttgccc cctgcaatta aatgctactt ctcattttgt
7981 gttgtttttc caaaagactc ggttattgaa atagataagt tgatcaagtt gtggatggca
8041 caaaactatc tcaactctaa tgcgagtaga gaaatggaga tggttggcag agactacttt
8101 gaatatttag ctgctcgatc tttcttccaa gattttgaaa aagatggtga tgatagtata
8161 ataagatgta agatgcatga catagtgcat agttttgccc aatttttgac taagaatgag
8221 tgttgtatta tgaacaaaga agggagaaca aatatatcct tccaaaaaat tcgcaatgcc
8281 accttaaatg gccaacaaag gcacccgaat tttgtctcca catataaaat gaagaatcta
8341 cgcaccctct tgcttgagtt tgtagtcgtt tcaagcattg atgaagcctt acctaattta
8401 ttccagcatt tgacatgcct cagggtattg gattttgtgc ggaatccttc gataaagtaa
8461 cttccaaagg cactagagaa attgatacat ttaaaatgcc ttaatctatc acattgtcat
8521 ggattgaggg aattgccgga agcaatttgt gatttgtata atttacaaac cttaaatatt
8581 cgtagatgtg attcacttgt gcaactacca caagcaatgg gtaaacttac taatctgagg
8641 catctgcaaa attttctaac tattactcta aaagggcttg ccaaaaggaa tttcaagatt
8701 aaactctctt caaacattgg agaaattcac tgtaagcagt gatggtcata atgaatgcaa
8761 cataggagat ttgagaaact tgagcaacct tagaggggag cttgaaataa gagggttgca
8821 atgtcacgcc ctaagaccca ctccaagggc gtgatggtca tttcacacct caaacccaaa
8881 ggcttatagt gtaacctgac ccaaacaatc aacttgtaac tggaagtgac catttaccaa
8941 atatctgttc agagtagtgg aacaaaattc taaaatcttc aaaacttaac tttaaaacta
9001 agcatccatc aaccaaaatc cattatccaa taaattgcaa actcaaataa tgcaagtgct
9061 aacaaaattt tcataatctc caaatctcaa cttcaaacta tcataaaaaa agatttaaaa
9121 gatcaatatc taaatagctt ccaaaaacca aataatccaa atgaacataa acttataagc
9181 taacaatgtc caaaaataac atcctaagca aaatcctaat gatgaccatt tcccaaccta
9241 gtcatcactc ctcgcccgaa ctaagagtac ctgaaaaaaa attatcaata tggggaatga
9301 gctcaaagcc caataaggaa cattaatgca gtccatagat caaatatttc aagttcactt
9361 gtaaaatatg agatattata actaattatt ttcataaacc tttgagtcaa ttttgccaat
9421 acattcaaaa cttttaattg tacacttcca tttctgattc aggcattttc atatcaaatt
9481 cgataaaaac attcaaatta tttatttact ctggtcatca aacatcaaat ggtgcccaat
9541 ttggtgggac ttttcaaata agtggctagc ctcaaattgt ttctttaagg tagacggaat
9601 caaacactac tagtactaat aacctttaac caaaccccta gaggttgagg tccaaatcaa
9661 ttacattccc caccaagaaa tgtaaaggtc aactatttat cccgttaaca agggtcaaac
9721 aaaccagagt caaacactta tttcaattat tcaaatttgt aaaacataat atctccacat
9781 ttctctgttg taaacaaaat ataaggttat tacatacttt tcaagcaaaa tatatttgat
9841 ctatgcataa aacgaataat aactcaaaat gtttccaaat gatgtttatc aaaatttgtt
9901 tctaaaaaaa aaaataactg cattaatttc tcttacctta aaagaagtcc tcaaaaacat
9961 tggagaaaaa taatcctgaa aatctacttt tcacctaaca aartataaga gaaataatca
10021 ttactaktta tctaaattat aggttgacaa tcctaaawtt taggtattca aattaatgtt
10081 ttaattatga agataattta atctattcct atttagaaaa ttaataaatt tctaattcat
10141 ataaaactta aatttwattt tctaatttar tttcttrgga cacaacataa tttaattaaa
10201 ctwrcaatta wttcactaat taaattwwat tgctacctat taaytwacam tcatcattag
10261 tataat
//