LOCUS       AM482126                9974 bp    DNA     linear   PLN 05-FEB-2008
DEFINITION  Vitis vinifera contig VV78X094060.3, whole genome shotgun sequence.
ACCESSION   AM482126
VERSION     AM482126.2
DBLINK      BioProject:PRJEA18357
KEYWORDS    .
SOURCE      Vitis vinifera (wine grape)
  ORGANISM  Vitis vinifera
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE   1
  AUTHORS   Velasco R.
  JOURNAL   Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
            Molecular Biology, istituto agrario "San Michele all'Adige", Via
            Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
  REMARK    revised by [3]
REFERENCE   2
  AUTHORS   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
            Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
            Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
            Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
            Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
            Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
            Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
            Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
            Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
            Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
            Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
            Viola R.
  TITLE     The first genome sequence of an elite grapevine cultivar (Pinot
            noir Vitis vinifera L.): coping with a highly heterozygous genome
  JOURNAL   PLoS One 2(12), e1326-e1326(2007).
REFERENCE   3  (bases 1 to 9974)
  AUTHORS   Velasco R.
  JOURNAL   Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
            Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
            (TN) - ITALY
COMMENT     NOTE: This is a 'working draft' sequence. The true order of the
            contigs
            and the gap size among them are not known. The actual genome
            coverage is
            11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
            Sequencing
            effort has been performed by IASMA, Myriad Genetics and 454 Life
            Science.
            The gene prediction has been performed by FGENESH program in
            collaboration
            with Softberry, while the identified genes has been annotated by
            similarity search and their function has been described using Gene
            Ontology terms (www.geneontology.org).
FEATURES             Location/Qualifiers
     source          1..9974
                     /organism="Vitis vinifera"
                     /chromosome="14"
                     /cultivar="Pinot Noir"
                     /mol_type="genomic DNA"
                     /clone="ENTAV 115"
                     /db_xref="taxon:29760"
     CDS             3329..5578
                     /locus_tag="VITISV_011842"
                     /product="hypothetical protein"
                     /note="GO:0008270 GO:0003676"
                     /note="weakly similar to EMBL:AP008208"
                     /db_xref="GOA:A5C4J5"
                     /db_xref="InterPro:IPR004332"
                     /db_xref="InterPro:IPR006564"
                     /db_xref="InterPro:IPR007527"
                     /db_xref="InterPro:IPR018289"
                     /db_xref="UniProtKB/TrEMBL:A5C4J5"
                     /inference="similar to DNA sequence:EMBL:AP008208"
                     /experiment="confirmed by EST"
                     /protein_id="CAN83921.1"
                     /translation="MANHDLILGPNHNLGLGQNQQLVLGHNHNLGLGQNHTLELGQTH
                     EHDLGLGHSHDHELGLSHAHDHDLGLGQTVHQGADEHGYEHGNELAMDRKPEHDDHGL
                     SLAEQNHELALSENNELAVSENQELDDNLDLAVDDHQEMGIESTSDMVQQHQLVVSTP
                     VLQARTVVANPSYELVVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAS
                     DGCPWRIHAAKLPGVPTFTIRTIHEAHTCGGIAHLGHQQASVQWVANSVEQRLRENPN
                     YKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPG
                     SIASVYGNPTDNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLFATGFD
                     GDGALFPLAFGVVDEENDENWMWFLSELHNLLEVNTENMPRLTILSDRQKGIVDGVEA
                     NFPTAFHGFCMRHLSDSFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAA
                     YWIRRIPPRLWATAYFEGTRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTW
                     FNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRN
                     RCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKTL
                     WKELSEGDPNGSKSVEIMINPPKSLRPPGRPRKKRVRAEDRGRVKRVVHCSRCNQTGH
                     FRTTCAAPI"
BASE COUNT         3121 a         1582 c         1700 g         3562 t
ORIGIN      
        1 ttactttatg ttcttaattg tttttctgtt ttacaaaatc ttaaaaattt gatgaaatgg
       61 aatccaacct actttttttt ttattttttt ttataagaat tcttatattt tatgtaattt
      121 tttttataaa aaaagtatag aaaatgtatg taaacatgca cgataaatgt aatgttcaca
      181 tgtatttttt atttttgcct tttacctatt gctatgtttg gttttwaaaa gtactaagga
      241 aagaaaacaa tgttaagaaa aatgattttt cttatatttg gttcaacatc aaatatacca
      301 aagaaaataa aatataatta aaattagtta aaaatttata tattttaaaa ttatttaatt
      361 tttatttaat gaagaaaaca agttaaatga ataataagaa acatataaaa ataatttatt
      421 aactttgaat tttttttttc acttttccat tttttccact ttttctctct atcatttttt
      481 cctcccattt tcccttaaat tttttgggaa ccacataaag cctaaaagtt tgggatgaaa
      541 tcaaagtcat aagctctatt tgggaaagtg ttttcaaaaa acagttgtgg aaaatagttt
      601 ttgttttatg atgttttata ggataaaagt ttgtttgaaa acttgaaatg tttttaaata
      661 aaaataactt tcatatatag tgttttatgt ttaatcatct agtatattta tataattaat
      721 tttaaaaata agtcctctaa caacaagtgt aaacaattaa aatatgttat ttaaaaatat
      781 cattttttaa acgtatttag tgctttttta ttagggagta tagaaaaccg ttttaaaaaa
      841 caattgtcaa acaaggtcat aattttaagc aaattttaac atcattaatg ttttatcaaa
      901 tataaaacac aaacttgacg aagcactttt aagaatttga aaaattattt atagtattaa
      961 aaaatcattt ataatatttt gtagagaaat acttggaagt gatttttcta aaaatacttt
     1021 aaaaaaaaaa aaaaaacttc cattaaaaat gcttcgacta gtaatactat caaaagtact
     1081 gtaacactag atcaaggaaa ttcatacttt aagaatgaga aaacaaaaac aaaattttaa
     1141 atctttcaac ttttatctca cactcaataa aaaagtgaaa aatgtgtctt atttctttaa
     1201 tccattggtc atttttaagt tttcttttca ccacctttaa tcggcatata aattattaaa
     1261 ttttatttaa atattgattt ttattctctt ttcaaagctt attttctaag gcaaaagatc
     1321 actccaagta gcacaaagca taatattttt caaagcttac catttttccc cctgccaaag
     1381 tcaatgctaa aatagtaact ctcaaaaggt tgccaataat ttagtggatg tttcttatag
     1441 actttcaaaa tatgcagcat tcccattgtc ctcaaatttg aaactaaagt taccaaagtt
     1501 ttatcatttt atgtttggtt tgagggaaaa tgtaagagaa agaaaataaa gaggaaaaat
     1561 agaagaaaag gaaaaaaaga agatttaaaa ttaatatatt tattttcaaa ctcatttcac
     1621 ttatttagtt tattgatgta attattaaat aattagaaaa tgtataaatt yttaattagt
     1681 tttaatttaa tatttatgag aaaataattt ttcttaatat ttttttttct tttttgagta
     1741 tttttgggac caaacataac ctaagtttat aggaactatc ttttttttat aaaaaaaaga
     1801 catatagatg ttactattta atagaaagca aagcaactaa aaagagtggg cttcatggag
     1861 gtagttataa cttcccaaat gaagagaaaa aaagggggca atagagtaat tccaaaataa
     1921 agaaaaaaaa gaggcttcat aattttgacc taaatacccc ctttctcgcc ataccctttg
     1981 cctgtattcc cactcctcaa aacctcccaa cacccctctt cttctgcccc tctatttccc
     2041 aatctctcct cctctaccct gattttcccc tctactccct ctcaattacc cgcccttttc
     2101 ctttcaaatc ttttcccttt acattcttcc accgccactt cttctcaatt tctgccaatt
     2161 cccaaaccct aagtcttgat tcacccttct ctgcgtttct ctcaaaaccc cacttgtgct
     2221 cgcccttttc tttgctattt ggattgctat agacgaggga agttgcatgt gagctcgatt
     2281 tctttgctgg gcctttggaa acctagtttt tttggcttga tctggacggc gtcgttttga
     2341 gcctggagtc ttcttggcct ttcgggtttt ggagtttcag gtatttggct ttctgggttg
     2401 tggtgatttt ggttttgtgt ttgtttcgat tcttgggttc ggtttgattt ttgctgaatt
     2461 ttgttccttg atggctgggt ttagtaaagt tctggttgtt ggcttttggt atggtggatt
     2521 cgctgacttg ggaatcgaaa tagtagtacg agcagctgag agtggatttt gtacttctgt
     2581 gtcttcatat gatctttgtt tgttagtgag agtaaaataa ggaaaaactt gattctcttt
     2641 gctaggctag tggttgcagt ttcacgaaga aggctgtact ttctggctct gaaatgatta
     2701 tttgcattgg ggttttcgaa ttcgagaagc aaaggaacag caagaacagc tgagggtgga
     2761 tttcccttgt ttggtatgtt gttcgtatgc attctattta ttaaactaac aaagagattc
     2821 tctatccttc agatttgttt ggtatattct ttcatatcac cgccactgcc atgctatttt
     2881 ctttgatatc catgccatgt tttaaaccaa catggagatt atctctaatc cgtttttttt
     2941 tttggcactt ctccatgtct ttttgacatt aaaaaggaca aaagtaatca acattttttt
     3001 tttgtcaatt ctttatccaa ccatcagcaa ccaacggtca ttctttgtat ttaattgtca
     3061 tgatgattta ataatgctat agaaaaccaa ttgctaggta tgcttgctgt gtgtgtgatt
     3121 actgtagtgt ttatttatgt aagtggtaaa acatttgttt taggacttgt tagagtttat
     3181 gtagattgat ggtgattgtg aaaggggtga tgagattttc ttcactcata tgacaggggt
     3241 tttctgaaac agacgagatt tagagaggca gtggtacaga ttataagctg tcagtttggt
     3301 gctgggagct gaggaattgt tgttggtgat ggccaaccat gatttgatac ttggcccaaa
     3361 tcacaactta gggcttggcc agaatcagca gttggtgttg ggccataacc ataatctggg
     3421 tcttggtcag aaccatactt tagaattggg acaaacccat gagcatgatt tgggtttggg
     3481 acattctcat gaccatgaat tgggtttaag ccatgcacat gaccatgatc ttggtttggg
     3541 acaaactgtt catcaagggg ctgatgaaca tggttatgag catggtaatg agttagctat
     3601 ggatcggaaa ccagaacatg atgaccatgg attgtctctt gcagagcaga accatgagtt
     3661 agctttatct gagaacaatg aattggctgt ttcagaaaac caagaacttg atgataactt
     3721 agacctagct gtggacgatc accaggaaat ggggattgaa tctacctctg atatggttca
     3781 gcaacaccag cttgtagttt ccactcctgt tcttcaagcc cgtactgttg ttgcaaaccc
     3841 aagttatgag ctggtggttg gacaagagtt tccagatgtc aagagctgcc gaagggcatt
     3901 aagggacact gccattgccc ttcattttga aatgcagacc ataaaatctg acaagactcg
     3961 ttttactgca aaatgtgcta gtgatggatg cccctggcgc atacatgctg caaagcttcc
     4021 aggtgttcca actttcacta tcaggacaat ccatgaggcc catacatgtg gaggaattgc
     4081 tcatcttggt catcagcaag cctcagttca gtgggttgca aactctgtag agcaacgact
     4141 tagggaaaac cctaattaca agccaaagga gatactggaa gagatacacc gggttcatgg
     4201 tattacctta tcatacaagc aagcttggcg aggtaaggag cgtatcatgg ctgctatgcg
     4261 tggatccttt gaagaagggt accgtctgct tccacaatat tgtgaccaag ttaaacggac
     4321 gaaccctgga agtattgcat ctgtctatgg gaacccaaca gacaactgct tccagcgtct
     4381 ctttatttca tttcaggcat ccatctatgg tttcctgaat gcatgtcggc cgctccttgg
     4441 gcttgatagg acattcttga aaagtaagta tcttggtact ttactttttg ctactggttt
     4501 tgatggtgat ggtgctctgt ttcctttggc atttggtgtt gttgatgagg aaaatgatga
     4561 gaactggatg tggtttctct ctgaacttca taacctgctt gaggttaata ctgaaaacat
     4621 gccaaggctc acaattttat cagataggca gaaaggcatt gtagatggag tggaagcaaa
     4681 cttcccaact gcttttcatg ggttttgcat gcgtcacttg agtgatagct tccgaaagga
     4741 gtttaataat acaatgcttg tcaaccttct atgggaagct gctcatgctc tcactgtaat
     4801 tgaatttgag gcaaaaatcc tagaaattga agagatatca caagatgccg catactggat
     4861 tcgacgaatt ccacctcgtt tgtgggctac agcttatttt gagggaacac ggtttggaca
     4921 tctgacagct aatatagttg aatctttaaa tacttggatt ctagaagctt ctggactacc
     4981 aattattcag atgatggaat gcattaggag acagctaatg acttggttca atgaacgccg
     5041 agagacgagt atgcagtgga cctcaatact tgtgccttct gctgagagac gtgttgcaga
     5101 ggctctcgag cgtgcacgca cttatcaggt gctacgtgct aatgaagctg aatttgaagt
     5161 tatctctcat gaaggaacaa atattgtgga tattcgcaat cgttgctgtc tttgtcgggg
     5221 ctggcagctg tatggtttgc cctgtgcaca tgctgtggct gcacttctct cttgcaggca
     5281 gaatgttcat cgatttactg agagctgttt cactgttgca acttatcgta aaacatactc
     5341 acaaactata catccaattc cagataaaac tctatggaag gagttatctg agggagatcc
     5401 gaatggaagc aaatctgtgg agattatgat caacccaccc aaatcactta ggccacctgg
     5461 acgaccgaga aagaagcgag tgcgagcaga agaccgtggc cgtgtgaaac gagttgtgca
     5521 ttgtagccgt tgtaatcaga caggccattt tagaacaaca tgtgcagcac ccatttaaga
     5581 cttccctgtc aacaattggt ttactaccat catatttggg tatatccctt tcctgtgcaa
     5641 agaaaatttt aattctgttt attatttctg gagttctatt agattagact agatttgcat
     5701 gttgatgcta tattctgttc cttgacattt aggcgaatta agttaaatat cagctatgtt
     5761 atctgaagct tcacctcaat aatacactgt tatggaagga cccacattca tggattttta
     5821 gctttcaata tcttctaagt tattttctct tgtcttagca tttgaggttt atcttgggct
     5881 tttgtttaat catgcttgtt ctcaactttc ttttgctggt ccaatctaat ttgataaact
     5941 tcaattcata tcttagactg ttacttcact gtggttgtgc ttgattatgc ttactgaagg
     6001 ttactagtct cagttgcttg accctgcaca tgttcttcca tcacatatat agtaacgact
     6061 ccatccatcc atccggccat ccatcaacct gtttcccctg gtgatatatc atttttatgg
     6121 tataaaatcc atccatccac ccatctatct ttgcatattc ttacatcatt aatattggat
     6181 ctgacccatg tccagacaac atgaactcat gagtttgtag tcatttattt gaaaccagag
     6241 ttttacccaa gacaagctct gctaagcctg gataagaccc tgttaagtag aatggacttg
     6301 gattgagggt ctggatcagg tcacaaactt tcatgtttgc tcagctccta agctttattt
     6361 ggatgcaaac aagaatggtt ctttctgatg taagaaaatg agaaggaaat catggaagaa
     6421 agttttatga ggaattccat ttttatttaa tttttggcat tttcttttcc tgcattcttt
     6481 ccaaaatcca aataaaatct ttgtgaatcc cattaaagct atgaaggcaa gctttttacg
     6541 tgagtgacaa ggttttcctt ctactatgaa atgagcctca ggtgtgtttg ataactttga
     6601 ttgtagccgc ctaattattc taaatagtta tacttttgtg tcaaaaatat tacatgacaa
     6661 ttgaaataaa atctctcttg aaatttgact tctttgagag gaaaactttg acttgggata
     6721 cttctttagt cctagattta gtatactgag gatgagaatt gctatgataa ctgttaaatt
     6781 attttccaat ccatattttt cattaaaaag gcagatttgt gtgagcttct ctacaactct
     6841 ttttataaaa ggagagtcag atatgtttcc tgtgagatgt tgggtttatc aaaattttag
     6901 ttaggtaatt ttcttttctt tccttggaaa tgggtgctgt accacgtttt ttttttatca
     6961 tgttctgtca tttcatgtga cagttgttgt agtatcacac ctataggtgc agccaaatta
     7021 ttggtccgtg attgctcctg ataagatgct gtcatggacc agtaatgatg gcatgctagt
     7081 tctgaaatca ggtggtaaga aactgtggcc atattactac ctttctgttt gatttcattt
     7141 cttttccttt gatttcttta gaagaagcac acaactcaaa gcgcacgact ctagtgaaat
     7201 ttcatcatat tgattacaag caagctgctg cattttaatt taggattctg tgatatgatt
     7261 aagctttaga tgataaaaat tcatattagc ttcttgtata taatcttttt ctttggttac
     7321 agattacagt cagctaatag atttttgggt agtcattgtc tgggaacggc tctgggattt
     7381 cctcaactgt tttgattcca gttttgaaca caaaaatcgg aattcaggaa cttcacttgg
     7441 agtaccaggt catatggaat caatactttt aattattttc ctctttcgta ggggtgtgtg
     7501 gtaaaactta atacttatta cttactgatt taagttgatt ttaaactaaa ttatatttaa
     7561 gttgttaatt taaaacttat tacttaattc ttactttaag tattaaagat atgtgataat
     7621 attaacttaa aatttattct aaattatcaa atccatatat ttatcctcat aaattgtaac
     7681 aagggtaaag gaggtcaaat aacaatgaat gtcatggagt attaaaagat attatgaagg
     7741 taaatagggt aaatgaggat caaaaggtaa aataaagata tgaacttaag aataatgtaa
     7801 ttatttttac tttaagtcat atcattaaat tattttacta aatatactta atttacttga
     7861 tgacttaaat tatgttatta agttacttta agttattaag ttggtttacc gaatattcac
     7921 ttagttttgg tataaataga actcaactta atgttgtgat attgcctatt tttagtgata
     7981 gaatttaaac ttaattatta aggttttgaa ttctcaagga tgaagattgg gtgtcatacc
     8041 ttaaggttac ctttgattcc cggaaaattt gggggaaaaa tataagggaa agaaaataaa
     8101 gaggaaaaat agaaaaaaaa aaaaagtgaa gggaaataaa aaattaaatt taaagtcaat
     8161 aattattttt atatattatt ttaaattcat ttaatttatt ttaactcttc tatattaaga
     8221 taaaataatt taaaaatgca taaatttcta actaacctta attatatttg attttcttta
     8281 atatttttta tattacattt gattttttta aaaaaatatt ttttatatta catttgattt
     8341 tctttggtat tttccatatt atagctaaat gtgaagaaac atatatatat atatatatat
     8401 atatatatat atatataaat atgttttaac aatttttttt ttcttagtag tttctggaat
     8461 caaatataac ctgaggactt gagtccagga gcttctaacg catacccgcc aaagttgttt
     8521 gtggaactgg aaaccaaagg tgaaattcct tggaaaaagc ttgggttcag tagaagggag
     8581 tcatattgga ctatcagtta gacatcctcc aaaactggcc tgcaaaaatg aaaaataatt
     8641 gtccaaggca gtggaggtcc tttgccccca taatcgttgc agaaaggtga agttgtgtga
     8701 aggcaggctt ccttgagtaa gagtttggtg atttagatca ttaaagcaga gtaagagtgc
     8761 aaaataaaag gcattttgag aggttatcag attgttgtta gactcttaaa ttcatgtcaa
     8821 ggggaaaaag gaccttcatg aattggtgct actctgcaaa aaagcatcac ttccacccat
     8881 ctcctgccct gcttctttac ccccagaatc acatcatatt ctgagatcat ctgatggatg
     8941 aagaagaagc atgaacccat gattttgtaa tttttacaga tgcctcccat ccaacacaac
     9001 attataaaat atatcagcaa aagatacata actgactaac ttttatcaac agctactcta
     9061 ccaaatgaag aacattccat aattgtcaaa attccttatc cagcttcact acttattttc
     9121 attccctttt cactcctctc aatggtgtaa gtgcagttga atggacctac ctatccatga
     9181 ccatgagtta atatttgatt taggttatgt ttattcccag aaagtgctta ggaaaaacaa
     9241 aaatgttaag aaaaataaaa aaatcaaatg taattgaaat taattaaaaa cttatacatt
     9301 ttaaaattat ttaatcttca tatcaaagag ttaaattaag tgaaacgagt ttaagtaata
     9361 tataaaatta attcattgac tttaaatcta ttttttattt attatttatt tttttccctt
     9421 ccactattct tctctagttt cttttttttt ttttttccaa ttttttgaaa atcaaacatt
     9481 acgtgggtgt ttggtaaact aacttaataa ctttaagtga cttaataatt taatttaaat
     9541 tattawgtaa attaaatatg tttggtaaaa taagttaatg gtatgactta aaagtaaaaa
     9601 acaactttaa gtaataagta aaaacaatta acttattctt aagtctacgt ctttattata
     9661 cttttttacc ttaatttatc ttaaatacct caatgatttg ttttgttact ccataatttc
     9721 cattgttgtt tgacwatttt tttyccctag ttataattag gaggataaat atgtcaattt
     9781 gatggttaaa twaatttawt aaacaacctt aacacttaaa ataagaatta agtaataagt
     9841 tttaagttaa cgacttcagt ataatataat ttaaagtcaa cttaagtcat taaataataa
     9901 atattaagtt ttamctaaca cctctacctt caacataata tataactaag gttaatagaa
     9961 ctaagktgtg aatg
//