LOCUS AM482126 9974 bp DNA linear PLN 05-FEB-2008 DEFINITION Vitis vinifera contig VV78X094060.3, whole genome shotgun sequence. ACCESSION AM482126 VERSION AM482126.2 DBLINK BioProject:PRJEA18357 KEYWORDS . SOURCE Vitis vinifera (wine grape) ORGANISM Vitis vinifera Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis. REFERENCE 1 AUTHORS Velasco R. JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and Molecular Biology, istituto agrario "San Michele all'Adige", Via Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY. REMARK revised by [3] REFERENCE 2 AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R. TITLE The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome JOURNAL PLoS One 2(12), e1326-e1326(2007). REFERENCE 3 (bases 1 to 9974) AUTHORS Velasco R. JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige (TN) - ITALY COMMENT NOTE: This is a 'working draft' sequence. The true order of the contigs and the gap size among them are not known. The actual genome coverage is 11X, 7X sequenced by Sanger method and 4X by pyrosequencing. Sequencing effort has been performed by IASMA, Myriad Genetics and 454 Life Science. The gene prediction has been performed by FGENESH program in collaboration with Softberry, while the identified genes has been annotated by similarity search and their function has been described using Gene Ontology terms (www.geneontology.org). FEATURES Location/Qualifiers source 1..9974 /organism="Vitis vinifera" /chromosome="14" /cultivar="Pinot Noir" /mol_type="genomic DNA" /clone="ENTAV 115" /db_xref="taxon:29760" CDS 3329..5578 /locus_tag="VITISV_011842" /product="hypothetical protein" /note="GO:0008270 GO:0003676" /note="weakly similar to EMBL:AP008208" /db_xref="GOA:A5C4J5" /db_xref="InterPro:IPR004332" /db_xref="InterPro:IPR006564" /db_xref="InterPro:IPR007527" /db_xref="InterPro:IPR018289" /db_xref="UniProtKB/TrEMBL:A5C4J5" /inference="similar to DNA sequence:EMBL:AP008208" /experiment="confirmed by EST" /protein_id="CAN83921.1" /translation="MANHDLILGPNHNLGLGQNQQLVLGHNHNLGLGQNHTLELGQTH EHDLGLGHSHDHELGLSHAHDHDLGLGQTVHQGADEHGYEHGNELAMDRKPEHDDHGL SLAEQNHELALSENNELAVSENQELDDNLDLAVDDHQEMGIESTSDMVQQHQLVVSTP VLQARTVVANPSYELVVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAS DGCPWRIHAAKLPGVPTFTIRTIHEAHTCGGIAHLGHQQASVQWVANSVEQRLRENPN YKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPG SIASVYGNPTDNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLFATGFD GDGALFPLAFGVVDEENDENWMWFLSELHNLLEVNTENMPRLTILSDRQKGIVDGVEA NFPTAFHGFCMRHLSDSFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAA YWIRRIPPRLWATAYFEGTRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTW FNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRN RCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKTL WKELSEGDPNGSKSVEIMINPPKSLRPPGRPRKKRVRAEDRGRVKRVVHCSRCNQTGH FRTTCAAPI" BASE COUNT 3121 a 1582 c 1700 g 3562 t ORIGIN 1 ttactttatg ttcttaattg tttttctgtt ttacaaaatc ttaaaaattt gatgaaatgg 61 aatccaacct actttttttt ttattttttt ttataagaat tcttatattt tatgtaattt 121 tttttataaa aaaagtatag aaaatgtatg taaacatgca cgataaatgt aatgttcaca 181 tgtatttttt atttttgcct tttacctatt gctatgtttg gttttwaaaa gtactaagga 241 aagaaaacaa tgttaagaaa aatgattttt cttatatttg gttcaacatc aaatatacca 301 aagaaaataa aatataatta aaattagtta aaaatttata tattttaaaa ttatttaatt 361 tttatttaat gaagaaaaca agttaaatga ataataagaa acatataaaa ataatttatt 421 aactttgaat tttttttttc acttttccat tttttccact ttttctctct atcatttttt 481 cctcccattt tcccttaaat tttttgggaa ccacataaag cctaaaagtt tgggatgaaa 541 tcaaagtcat aagctctatt tgggaaagtg ttttcaaaaa acagttgtgg aaaatagttt 601 ttgttttatg atgttttata ggataaaagt ttgtttgaaa acttgaaatg tttttaaata 661 aaaataactt tcatatatag tgttttatgt ttaatcatct agtatattta tataattaat 721 tttaaaaata agtcctctaa caacaagtgt aaacaattaa aatatgttat ttaaaaatat 781 cattttttaa acgtatttag tgctttttta ttagggagta tagaaaaccg ttttaaaaaa 841 caattgtcaa acaaggtcat aattttaagc aaattttaac atcattaatg ttttatcaaa 901 tataaaacac aaacttgacg aagcactttt aagaatttga aaaattattt atagtattaa 961 aaaatcattt ataatatttt gtagagaaat acttggaagt gatttttcta aaaatacttt 1021 aaaaaaaaaa aaaaaacttc cattaaaaat gcttcgacta gtaatactat caaaagtact 1081 gtaacactag atcaaggaaa ttcatacttt aagaatgaga aaacaaaaac aaaattttaa 1141 atctttcaac ttttatctca cactcaataa aaaagtgaaa aatgtgtctt atttctttaa 1201 tccattggtc atttttaagt tttcttttca ccacctttaa tcggcatata aattattaaa 1261 ttttatttaa atattgattt ttattctctt ttcaaagctt attttctaag gcaaaagatc 1321 actccaagta gcacaaagca taatattttt caaagcttac catttttccc cctgccaaag 1381 tcaatgctaa aatagtaact ctcaaaaggt tgccaataat ttagtggatg tttcttatag 1441 actttcaaaa tatgcagcat tcccattgtc ctcaaatttg aaactaaagt taccaaagtt 1501 ttatcatttt atgtttggtt tgagggaaaa tgtaagagaa agaaaataaa gaggaaaaat 1561 agaagaaaag gaaaaaaaga agatttaaaa ttaatatatt tattttcaaa ctcatttcac 1621 ttatttagtt tattgatgta attattaaat aattagaaaa tgtataaatt yttaattagt 1681 tttaatttaa tatttatgag aaaataattt ttcttaatat ttttttttct tttttgagta 1741 tttttgggac caaacataac ctaagtttat aggaactatc ttttttttat aaaaaaaaga 1801 catatagatg ttactattta atagaaagca aagcaactaa aaagagtggg cttcatggag 1861 gtagttataa cttcccaaat gaagagaaaa aaagggggca atagagtaat tccaaaataa 1921 agaaaaaaaa gaggcttcat aattttgacc taaatacccc ctttctcgcc ataccctttg 1981 cctgtattcc cactcctcaa aacctcccaa cacccctctt cttctgcccc tctatttccc 2041 aatctctcct cctctaccct gattttcccc tctactccct ctcaattacc cgcccttttc 2101 ctttcaaatc ttttcccttt acattcttcc accgccactt cttctcaatt tctgccaatt 2161 cccaaaccct aagtcttgat tcacccttct ctgcgtttct ctcaaaaccc cacttgtgct 2221 cgcccttttc tttgctattt ggattgctat agacgaggga agttgcatgt gagctcgatt 2281 tctttgctgg gcctttggaa acctagtttt tttggcttga tctggacggc gtcgttttga 2341 gcctggagtc ttcttggcct ttcgggtttt ggagtttcag gtatttggct ttctgggttg 2401 tggtgatttt ggttttgtgt ttgtttcgat tcttgggttc ggtttgattt ttgctgaatt 2461 ttgttccttg atggctgggt ttagtaaagt tctggttgtt ggcttttggt atggtggatt 2521 cgctgacttg ggaatcgaaa tagtagtacg agcagctgag agtggatttt gtacttctgt 2581 gtcttcatat gatctttgtt tgttagtgag agtaaaataa ggaaaaactt gattctcttt 2641 gctaggctag tggttgcagt ttcacgaaga aggctgtact ttctggctct gaaatgatta 2701 tttgcattgg ggttttcgaa ttcgagaagc aaaggaacag caagaacagc tgagggtgga 2761 tttcccttgt ttggtatgtt gttcgtatgc attctattta ttaaactaac aaagagattc 2821 tctatccttc agatttgttt ggtatattct ttcatatcac cgccactgcc atgctatttt 2881 ctttgatatc catgccatgt tttaaaccaa catggagatt atctctaatc cgtttttttt 2941 tttggcactt ctccatgtct ttttgacatt aaaaaggaca aaagtaatca acattttttt 3001 tttgtcaatt ctttatccaa ccatcagcaa ccaacggtca ttctttgtat ttaattgtca 3061 tgatgattta ataatgctat agaaaaccaa ttgctaggta tgcttgctgt gtgtgtgatt 3121 actgtagtgt ttatttatgt aagtggtaaa acatttgttt taggacttgt tagagtttat 3181 gtagattgat ggtgattgtg aaaggggtga tgagattttc ttcactcata tgacaggggt 3241 tttctgaaac agacgagatt tagagaggca gtggtacaga ttataagctg tcagtttggt 3301 gctgggagct gaggaattgt tgttggtgat ggccaaccat gatttgatac ttggcccaaa 3361 tcacaactta gggcttggcc agaatcagca gttggtgttg ggccataacc ataatctggg 3421 tcttggtcag aaccatactt tagaattggg acaaacccat gagcatgatt tgggtttggg 3481 acattctcat gaccatgaat tgggtttaag ccatgcacat gaccatgatc ttggtttggg 3541 acaaactgtt catcaagggg ctgatgaaca tggttatgag catggtaatg agttagctat 3601 ggatcggaaa ccagaacatg atgaccatgg attgtctctt gcagagcaga accatgagtt 3661 agctttatct gagaacaatg aattggctgt ttcagaaaac caagaacttg atgataactt 3721 agacctagct gtggacgatc accaggaaat ggggattgaa tctacctctg atatggttca 3781 gcaacaccag cttgtagttt ccactcctgt tcttcaagcc cgtactgttg ttgcaaaccc 3841 aagttatgag ctggtggttg gacaagagtt tccagatgtc aagagctgcc gaagggcatt 3901 aagggacact gccattgccc ttcattttga aatgcagacc ataaaatctg acaagactcg 3961 ttttactgca aaatgtgcta gtgatggatg cccctggcgc atacatgctg caaagcttcc 4021 aggtgttcca actttcacta tcaggacaat ccatgaggcc catacatgtg gaggaattgc 4081 tcatcttggt catcagcaag cctcagttca gtgggttgca aactctgtag agcaacgact 4141 tagggaaaac cctaattaca agccaaagga gatactggaa gagatacacc gggttcatgg 4201 tattacctta tcatacaagc aagcttggcg aggtaaggag cgtatcatgg ctgctatgcg 4261 tggatccttt gaagaagggt accgtctgct tccacaatat tgtgaccaag ttaaacggac 4321 gaaccctgga agtattgcat ctgtctatgg gaacccaaca gacaactgct tccagcgtct 4381 ctttatttca tttcaggcat ccatctatgg tttcctgaat gcatgtcggc cgctccttgg 4441 gcttgatagg acattcttga aaagtaagta tcttggtact ttactttttg ctactggttt 4501 tgatggtgat ggtgctctgt ttcctttggc atttggtgtt gttgatgagg aaaatgatga 4561 gaactggatg tggtttctct ctgaacttca taacctgctt gaggttaata ctgaaaacat 4621 gccaaggctc acaattttat cagataggca gaaaggcatt gtagatggag tggaagcaaa 4681 cttcccaact gcttttcatg ggttttgcat gcgtcacttg agtgatagct tccgaaagga 4741 gtttaataat acaatgcttg tcaaccttct atgggaagct gctcatgctc tcactgtaat 4801 tgaatttgag gcaaaaatcc tagaaattga agagatatca caagatgccg catactggat 4861 tcgacgaatt ccacctcgtt tgtgggctac agcttatttt gagggaacac ggtttggaca 4921 tctgacagct aatatagttg aatctttaaa tacttggatt ctagaagctt ctggactacc 4981 aattattcag atgatggaat gcattaggag acagctaatg acttggttca atgaacgccg 5041 agagacgagt atgcagtgga cctcaatact tgtgccttct gctgagagac gtgttgcaga 5101 ggctctcgag cgtgcacgca cttatcaggt gctacgtgct aatgaagctg aatttgaagt 5161 tatctctcat gaaggaacaa atattgtgga tattcgcaat cgttgctgtc tttgtcgggg 5221 ctggcagctg tatggtttgc cctgtgcaca tgctgtggct gcacttctct cttgcaggca 5281 gaatgttcat cgatttactg agagctgttt cactgttgca acttatcgta aaacatactc 5341 acaaactata catccaattc cagataaaac tctatggaag gagttatctg agggagatcc 5401 gaatggaagc aaatctgtgg agattatgat caacccaccc aaatcactta ggccacctgg 5461 acgaccgaga aagaagcgag tgcgagcaga agaccgtggc cgtgtgaaac gagttgtgca 5521 ttgtagccgt tgtaatcaga caggccattt tagaacaaca tgtgcagcac ccatttaaga 5581 cttccctgtc aacaattggt ttactaccat catatttggg tatatccctt tcctgtgcaa 5641 agaaaatttt aattctgttt attatttctg gagttctatt agattagact agatttgcat 5701 gttgatgcta tattctgttc cttgacattt aggcgaatta agttaaatat cagctatgtt 5761 atctgaagct tcacctcaat aatacactgt tatggaagga cccacattca tggattttta 5821 gctttcaata tcttctaagt tattttctct tgtcttagca tttgaggttt atcttgggct 5881 tttgtttaat catgcttgtt ctcaactttc ttttgctggt ccaatctaat ttgataaact 5941 tcaattcata tcttagactg ttacttcact gtggttgtgc ttgattatgc ttactgaagg 6001 ttactagtct cagttgcttg accctgcaca tgttcttcca tcacatatat agtaacgact 6061 ccatccatcc atccggccat ccatcaacct gtttcccctg gtgatatatc atttttatgg 6121 tataaaatcc atccatccac ccatctatct ttgcatattc ttacatcatt aatattggat 6181 ctgacccatg tccagacaac atgaactcat gagtttgtag tcatttattt gaaaccagag 6241 ttttacccaa gacaagctct gctaagcctg gataagaccc tgttaagtag aatggacttg 6301 gattgagggt ctggatcagg tcacaaactt tcatgtttgc tcagctccta agctttattt 6361 ggatgcaaac aagaatggtt ctttctgatg taagaaaatg agaaggaaat catggaagaa 6421 agttttatga ggaattccat ttttatttaa tttttggcat tttcttttcc tgcattcttt 6481 ccaaaatcca aataaaatct ttgtgaatcc cattaaagct atgaaggcaa gctttttacg 6541 tgagtgacaa ggttttcctt ctactatgaa atgagcctca ggtgtgtttg ataactttga 6601 ttgtagccgc ctaattattc taaatagtta tacttttgtg tcaaaaatat tacatgacaa 6661 ttgaaataaa atctctcttg aaatttgact tctttgagag gaaaactttg acttgggata 6721 cttctttagt cctagattta gtatactgag gatgagaatt gctatgataa ctgttaaatt 6781 attttccaat ccatattttt cattaaaaag gcagatttgt gtgagcttct ctacaactct 6841 ttttataaaa ggagagtcag atatgtttcc tgtgagatgt tgggtttatc aaaattttag 6901 ttaggtaatt ttcttttctt tccttggaaa tgggtgctgt accacgtttt ttttttatca 6961 tgttctgtca tttcatgtga cagttgttgt agtatcacac ctataggtgc agccaaatta 7021 ttggtccgtg attgctcctg ataagatgct gtcatggacc agtaatgatg gcatgctagt 7081 tctgaaatca ggtggtaaga aactgtggcc atattactac ctttctgttt gatttcattt 7141 cttttccttt gatttcttta gaagaagcac acaactcaaa gcgcacgact ctagtgaaat 7201 ttcatcatat tgattacaag caagctgctg cattttaatt taggattctg tgatatgatt 7261 aagctttaga tgataaaaat tcatattagc ttcttgtata taatcttttt ctttggttac 7321 agattacagt cagctaatag atttttgggt agtcattgtc tgggaacggc tctgggattt 7381 cctcaactgt tttgattcca gttttgaaca caaaaatcgg aattcaggaa cttcacttgg 7441 agtaccaggt catatggaat caatactttt aattattttc ctctttcgta ggggtgtgtg 7501 gtaaaactta atacttatta cttactgatt taagttgatt ttaaactaaa ttatatttaa 7561 gttgttaatt taaaacttat tacttaattc ttactttaag tattaaagat atgtgataat 7621 attaacttaa aatttattct aaattatcaa atccatatat ttatcctcat aaattgtaac 7681 aagggtaaag gaggtcaaat aacaatgaat gtcatggagt attaaaagat attatgaagg 7741 taaatagggt aaatgaggat caaaaggtaa aataaagata tgaacttaag aataatgtaa 7801 ttatttttac tttaagtcat atcattaaat tattttacta aatatactta atttacttga 7861 tgacttaaat tatgttatta agttacttta agttattaag ttggtttacc gaatattcac 7921 ttagttttgg tataaataga actcaactta atgttgtgat attgcctatt tttagtgata 7981 gaatttaaac ttaattatta aggttttgaa ttctcaagga tgaagattgg gtgtcatacc 8041 ttaaggttac ctttgattcc cggaaaattt gggggaaaaa tataagggaa agaaaataaa 8101 gaggaaaaat agaaaaaaaa aaaaagtgaa gggaaataaa aaattaaatt taaagtcaat 8161 aattattttt atatattatt ttaaattcat ttaatttatt ttaactcttc tatattaaga 8221 taaaataatt taaaaatgca taaatttcta actaacctta attatatttg attttcttta 8281 atatttttta tattacattt gattttttta aaaaaatatt ttttatatta catttgattt 8341 tctttggtat tttccatatt atagctaaat gtgaagaaac atatatatat atatatatat 8401 atatatatat atatataaat atgttttaac aatttttttt ttcttagtag tttctggaat 8461 caaatataac ctgaggactt gagtccagga gcttctaacg catacccgcc aaagttgttt 8521 gtggaactgg aaaccaaagg tgaaattcct tggaaaaagc ttgggttcag tagaagggag 8581 tcatattgga ctatcagtta gacatcctcc aaaactggcc tgcaaaaatg aaaaataatt 8641 gtccaaggca gtggaggtcc tttgccccca taatcgttgc agaaaggtga agttgtgtga 8701 aggcaggctt ccttgagtaa gagtttggtg atttagatca ttaaagcaga gtaagagtgc 8761 aaaataaaag gcattttgag aggttatcag attgttgtta gactcttaaa ttcatgtcaa 8821 ggggaaaaag gaccttcatg aattggtgct actctgcaaa aaagcatcac ttccacccat 8881 ctcctgccct gcttctttac ccccagaatc acatcatatt ctgagatcat ctgatggatg 8941 aagaagaagc atgaacccat gattttgtaa tttttacaga tgcctcccat ccaacacaac 9001 attataaaat atatcagcaa aagatacata actgactaac ttttatcaac agctactcta 9061 ccaaatgaag aacattccat aattgtcaaa attccttatc cagcttcact acttattttc 9121 attccctttt cactcctctc aatggtgtaa gtgcagttga atggacctac ctatccatga 9181 ccatgagtta atatttgatt taggttatgt ttattcccag aaagtgctta ggaaaaacaa 9241 aaatgttaag aaaaataaaa aaatcaaatg taattgaaat taattaaaaa cttatacatt 9301 ttaaaattat ttaatcttca tatcaaagag ttaaattaag tgaaacgagt ttaagtaata 9361 tataaaatta attcattgac tttaaatcta ttttttattt attatttatt tttttccctt 9421 ccactattct tctctagttt cttttttttt ttttttccaa ttttttgaaa atcaaacatt 9481 acgtgggtgt ttggtaaact aacttaataa ctttaagtga cttaataatt taatttaaat 9541 tattawgtaa attaaatatg tttggtaaaa taagttaatg gtatgactta aaagtaaaaa 9601 acaactttaa gtaataagta aaaacaatta acttattctt aagtctacgt ctttattata 9661 cttttttacc ttaatttatc ttaaatacct caatgatttg ttttgttact ccataatttc 9721 cattgttgtt tgacwatttt tttyccctag ttataattag gaggataaat atgtcaattt 9781 gatggttaaa twaatttawt aaacaacctt aacacttaaa ataagaatta agtaataagt 9841 tttaagttaa cgacttcagt ataatataat ttaaagtcaa cttaagtcat taaataataa 9901 atattaagtt ttamctaaca cctctacctt caacataata tataactaag gttaatagaa 9961 ctaagktgtg aatg //