LOCUS AM479767 4086 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X234733.2, whole genome shotgun sequence.
ACCESSION AM479767
VERSION AM479767.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 4086)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..4086
/organism="Vitis vinifera"
/chromosome="15"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(2..469,539..613)
/locus_tag="VITISV_005377"
/product="hypothetical protein"
/note="GO:0015074"
/note="partially similar to EMBL:AP008212"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5C2H1"
/inference="similar to DNA sequence:EMBL:AP008212"
/protein_id="CAN75229.1"
/translation="MLGRYLSNPGMNHWRAVKRVMRYLQRTKKYMLTYRRLDQLEFIG
YSDSDFVGCQDSIRSTSCYIYLLAGGAISWRSAKQTLITSSTMEVEFVAYYEASNQGI
WLRNFVTGLRVLDGIERPLKIFCDNKSAVLYSNNNRGSTKSKYIDIKFLVVKEKGLPP
KVFHEHTAHMGVVSFEDIQI"
BASE COUNT 1402 a 667 c 696 g 1321 t
ORIGIN
1 catgttaggc agatatctaa gtaaccctgg aatgaatcat tggagagcag tcaagagggt
61 tatgagatat ttacagagaa caaaaaagta catgcttaca tataggagat tggatcagtt
121 agagttcatt gggtattccg actccgactt tgttggatgc caagacagca taagatccac
181 atcatgctat atttatctgt tggctggtgg agcaatttca tggaggtctg ccaaacagac
241 actcataact tcatccacca tggaagtaga gtttgtagca tattatgagg catccaatca
301 aggaatatgg ctacgaaatt ttgtcactgg gctgcgtgtt ctggatggta ttgaaagacc
361 actgaagata ttttgtgaca ataaatcagc agttttatat tccaataaca acaggggttc
421 tacaaaatca aaatacattg atatcaagtt cctagttgta aaagaaaaag tacagagtgg
481 acagatatcc atagaacata ttggaacaaa ctccatgata gcggatccgc ttacaaaggg
541 attaccaccc aaggtctttc atgagcacac tgctcatatg ggtgttgttt catttgagga
601 tatccaaatt tagtgggagt ttatattatt cattgtatat tgctctatgt tatgtttaga
661 ctttatctat acatttggat tgtgttctgc agaaataaag tattcatttt attgcactct
721 gttaaattat gctaaagatt tgatctcaat aaagttaagt aggaccagtt ggaaataggc
781 atgaatagat cacattgcat gtaatttcca tgctatgcac tcatgattga tctatgtcat
841 ttagctgtgc agatatatgt gaccattgat tggtctagta acgattgatg taacaaaggc
901 caccttgatc ctatgtcagt atagttaatg gacaagattg ttcggatata ccctaaggac
961 atgatagcaa attttgagct cataaggtta agcacattta ttttattaca tatgcatgtg
1021 gcctagtggg agattgttag attaattttt gtaattaatc tataatttgg gccacacatg
1081 taaataatta aaatgtgtgt gctatcattt aattaagcct aaatatagtg atctaattaa
1141 taattgatta attggcttaa aggtataatt gtcatgagat tattgtgtag ataccattag
1201 ataattatta tttctatgag gggcagaaat ataattgtga taaaattaaa actgccctag
1261 cggtttataa atagggttat ggtccccatt ctacgactac gcattccaat ttctgaaaaa
1321 tcctctcaga gagaaattga cacaaaatct agtggctaga attggaagac catctcaaag
1381 ggttttcttc ctataaggtt tttccttcaa tggattcagg tatgcttcca ctattatttt
1441 tctactcatt gtttttaatc aggagattcc agtatatatg aaattagggt attcatcttg
1501 tttgattata acacttcgat catatgaaat caaaaacaaa agctcaaaga accatgaaag
1561 cacagagacg agtagagaat gacctcccaa gtggtccctc ctatcacttg agattacact
1621 gagggtagcc aattttaagg tgtggcgagt gctaatagac cctggaacac aactaacctt
1681 tcatgtccac ccgcatagga ataatgatac caaggagatc atgacccaat acaagtatgg
1741 tccctacttg gcttagatgg tatgcttgtc gatcccatct aggaaatcac tttacttgta
1801 atagtggggc tggtcacttg taccacttta ttcgttgtgg tggacaaccc ttctatgtat
1861 aagatcatca tagggtgacc atggggtcac gacatgtagg caatctcata ctcaagccac
1921 cataacatga aattccctac caaagaagga atgtacgtct tatggggaga tcaaactatt
1981 gctaggtcat ggtggaaact aattattttt gacaactgga acctcgtcaa tgtcagtaag
2041 tttgacgtta ggcaacttgc gatgctttta cactacgaaa gatctttggg aaaattgtgt
2101 tttcaggtaa ttgaggtaag gtaatcctat cagcaattat taaactcaaa atccaataaa
2161 ataatagaaa ttgagatgaa ggatatcttt aaaaaaaatt ctaaaatacc cttaattatt
2221 aagaacttgt gtgatagtga ttttagaaaa catttctaac attttaaaat ttttatcatt
2281 taagtgttaa aaatatttaa aaagttttct aaaatcacta tcaaacatac tttaaatgaa
2341 aaagcaaacg agtcaaacat attttaaaga actgacaatt attcattggg taatatagca
2401 catgaaaaaa ttaaacaaaa ataaattaaa ttatgttgta atatattgta atgataatgt
2461 atttatattg taagtataat gcatttatgt cgtacctata ttttattaca aaagtaataa
2521 ttctaaaaat gtttattcat accctattag tattaacaca tcgtatcaat atattaataa
2581 cattcatcca gtgcattgaa attatttaat aatttttgta tatatatata tatatatata
2641 taaactacaa atctcgtgaa ttcaaattag tattttattt ggtttcataa attatttatg
2701 ttagaaaaat taggctaatt caacctatgg taatcttcct agagaggggg aagggaataa
2761 ggtgatggtc tctttttgca aatttaaact atgtgaatgt aaaagacaaa tatatgcaag
2821 tatataataa aacaatataa agacaattgc atataaagta aaatagtagg gaaaggagaa
2881 tgcaaacaca agattttata gtggttcgac acaacccgac ctacatccac tctcctctag
2941 cttcaatccc aagcttgagg ttccactaat tcaaggcttc caaattaagc cttaaagcaa
3001 tacaattgga ttatgattct aatccacttt cttagacttt tggctctaag caccctttac
3061 aatcctcaag agatacctca ctcttgaaca acctcttaag tgatacccca cacttgagaa
3121 tcttcctctc aaagatatac aaataattga tctcataaaa tcctaataca aaaactttaa
3181 actcaattga tacaagaaaa ctaggattga atggtgcact aaagatatgc aagttttaga
3241 acaatgatac actcaaaaac actcttccaa ggctcaaata tattcaagaa aggtttggga
3301 aggttgaact cttaaacaat gaagatttgg agttttttta tagaggaaaa tcaaactagc
3361 cgttaatatt taatacttgg caggtgatcg ttagacctca accaaacctt gaccagacct
3421 cgaccaattg agatgtgggt cgaccggttc ctcgtctggt tgaacaacca ttctagaaga
3481 gaaagaaggt tttttgcacc cctcgaccaa ttgagctggt gattgatcgg ttactgttca
3541 cacccttgac cggttgaatt gggggtcaac ctactcatag accgattgtg ctaagagtcg
3601 acctgttcct catccgattc aaccggttga gccatttttt actcaacaac caactttttc
3661 aacttaaaac cttttaaaca agtttgaaaa acatttgaca tgaggtttta gttgaaaaca
3721 tgaaatcgtc caattttaaa atattttaaa caaaataact cttggatgat tttggtgcat
3781 aagtaaataa tgtaatgtat aaaaatccta gtgcactaac aactttacaa agagatcttt
3841 atgaagcttg agtcttgaaa aacacttctc tttgaggtgg tcttcttctt catgattttt
3901 ccttggcttg atttgtcttt gtcattgcca ctttggaaat catcttgcct aatcacactt
3961 gaaatataat cattagttct aaaccttgtt ttgttatcat caaaactaag attaaccaaa
4021 cattggtttc acaatttata atataagtat gttatgaaat atagtatgat catataaaat
4081 tattat
//