LOCUS AM479597 3241 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X061647.4, whole genome shotgun sequence.
ACCESSION AM479597
VERSION AM479597.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 3241)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..3241
/organism="Vitis vinifera"
/chromosome="7"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(1844..2347)
/locus_tag="VITISV_001234"
/product="hypothetical protein"
/note="GO:0015074"
/note="partially similar to EMBL:AP008212"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5C2C3"
/inference="similar to DNA sequence:EMBL:AP008212"
/protein_id="CAN83848.1"
/translation="MYRRTSNLEVVGYSDSDFVGCVDSRKSTSGYIFILAXGAISWRS
VKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSXAVFMA
KNNKSGSRSKHIDIKYLAIRERVKEXKVVIEHISTELMIADPLTKGMPPLKFKDHVVN
MGLSSLM"
CDS complement(join(2703..2737,2788..3082))
/locus_tag="VITISV_001235"
/product="hypothetical protein"
/note="GO:0003964"
/note="highly similar to EMBL:AB065032"
/db_xref="InterPro:IPR013103"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5C2C4"
/inference="similar to DNA sequence:EMBL:AB065032"
/protein_id="CAN83849.1"
/translation="MDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLK
QASRQWYLKFHNIISSFGFVENVMDQCIYLKVSGSKVCFLVLYVDDILLATNDKGYGR
DILCHWH"
BASE COUNT 1024 a 643 c 566 g 1001 t
ORIGIN
1 gtggaatgtt tttaacttct caattaagaa aatttcttcc aatttgataa caaaacatgc
61 ctggtaacat caaacaagct cagtccagcc tatctgaatt agctcatgaa tcaatcaaca
121 attgacaaat ctttcatttg ccttggctaa tcacatattg acttggtctt tcatttctct
181 gttttcaaat gctggaaaat taggctaaat gcagtgatga atgagtcaat gttattggaa
241 gagagcaaaa gagctaaact tcgaggcatg ctacagtcag attcaatgat atattggtta
301 aatttaccaa tgaggttcat ctttatgggg aaggagtatt cccctcaaga aggtgaagat
361 aaagggtgtt cccatgagaa ccctaatttg taaatatgca ctatctacta aactagtcat
421 ggtcatttta tttgcacctt tctctttggc caaaaataaa gcaacagtac ttgcaaatga
481 gaatagcaga cacttgaagg tcgtgaggaa ttgagtctgg attaaacttc attataacta
541 cacaattagg ttacagaaga gacattatct caaggataaa ggaacataaa tagaagagta
601 gttgcagtaa ataggtgcaa atatttttta gcagagaata tgaccaacag tgaatgaatc
661 aagacactct ggttcatgat ttaattagta ttccaagtat accggctagg gaagcacagg
721 tctttgctcc aactttgctt cttagagctt cagaacatgt tccaaagtgg attttcattt
781 aagtggcaag tgaagatatt ttggtttgaa acattatatc atttaatact gataatcagt
841 tccaattaat cagtgaatcc tctggttttc tttcttcaaa ccaatgtatg cctcactctt
901 ttgcttcctg tgtacaaacc cctcaagcaa atctatggca gaggtcttat ttcaaaacca
961 aaagggttct ccgaaaaatt taaagaaaac cccaaaaaaa aaaacaagaa ggtggtagag
1021 gaaagcaaag aagtgaagaa gcagagacag aagttaagca cacacaaagg ggttggcagc
1081 aaggtgatct tcgacgacct tgtaagcggc taaggccttg tccttgccag cttggatgtc
1141 ctcatctttg agttcaatgt caccctttgt gtgataattg ttagaaattt acatgctata
1201 ttcgattcca atgtacttgc aatatgaatc aagaccgaaa agactaagaa tagtctactt
1261 acctccagcc attgtagttg gtttcaaaaa cccagatttc caaactctga tctctatytt
1321 ttttagatgg tgtttttctg aagataataa cagagtgagt tcrggaccat tttytgaaaa
1381 aactttataa cagtggcttc catcaaacca cgttgcctct tgccaccatg ttgagcagtt
1441 ggtggaacgt gctccttaat cgcagcggaa gcgagatggt ggaggacgtg gtcaaagtgt
1501 tggaccatat catgaagtga gaacgtgtga actcacacgt gtattcagct tacattctcc
1561 cacttggtcc acactttaac ctaatgtcct aatttagtcc atcaattgtc tcattaagta
1621 acaaatacat gaatcatgac gataagtcct ctatttaacg agtgttacct tccatgtatt
1681 acaatgtact catttcttaa cattatactt tatgtggcaa tattacttaa tgaataaacc
1741 ctatgttcat tcttggtcca atgaagttga attttctcaa aattaaataa aaagtgcgca
1801 tcaatatgag aaaacatcat aataagagtt tgtacaatag aaactacata agggaactaa
1861 gtcccatgtt cactacatga tccttgaatt tcaatggtgg catgccctta gtcaaaggat
1921 cagcgatcat caattcagtg ctaatgtgct caataaccac tttcwtttct ttaacacgtt
1981 ctcttatggc taaatactta atgtcgatgt gtttgcttcg acttccactt ttattgtttt
2041 tcgccataaa gactgcarct gaattgtcgc aatatatact caatggccta gatattgaat
2101 ccataactct aagcccrgaa atgaaactct taagccatac accatgtgaa gtagcctcaa
2161 aacaagatat gaactcagct tccatagtag aagtagcagt catggtctgc ttaacgctcc
2221 tccaagatat agctccaycg gccaatataa aaatgtatcc agatgttgat ttacgtgaat
2281 caacacagcc aacaaagtct gaatctgagt agccaactac ctctaaattg cttgttcgtc
2341 tgtacataag cttgtaatct ttggttcctt gaagatatct catcactttc tttgcagctt
2401 tccagtggtc tatacctggg ttactctgat atcgtcctaa cattccaaca gcaaatgcaa
2461 tgtcaggcct tgtgcagacc tgagcataca tcaaacttcc gactgcagaa gcatatggaa
2521 tgttcttcat ttgttccctc tcaagatcgt ttttcgggca ttggtccaga ttgaacctat
2581 cacccttcac tataggagaa acactaggtg aacaattctt catccgaaat ctctctaaaa
2641 ctttattgat ataggtttct tgagacaaac ctaagatacc tttaaatctg tctctatgga
2701 tcttaatgcc aatgacataa gatgtctcgc ccatatcctt catgtcgaaa tttttagaga
2761 ggaattgttt tacctcatga agtaaaccct tatcattggt tgcaagtaag atgtcatcca
2821 cgtataaaac aagaaaacaa actttactcc cactgacctt aaggtatatg cattgatcca
2881 taacattttc aacaaaaccg aatgaagaaa ttatgttatg gaattttaaa taccattggc
2941 gggatgcttg cttcaaaccg tatatggatt tcttaagctt acaaaccaat tgctcaccat
3001 cactagaggg gaatccttca ggttgtttca tgtaaacctc ctcctctagc tctccattaa
3061 gaaatgctgt tttcacatcc atttgttgca attctaaatc aaagtgggct actaatgcca
3121 atataatgcg caaggaatct ttcttagata taggagaaaa ggtttccgtg taatcgattc
3181 cttctttctg agtgaacccc tttgcaacaa gtctggcctt gtatctttca atgttgccta
3241 a
//