LOCUS       AM479319                4478 bp    DNA     linear   PLN 05-FEB-2008
DEFINITION  Vitis vinifera contig VV78X107417.6, whole genome shotgun sequence.
ACCESSION   AM479319
VERSION     AM479319.2
DBLINK      BioProject:PRJEA18357
KEYWORDS    .
SOURCE      Vitis vinifera (wine grape)
  ORGANISM  Vitis vinifera
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE   1
  AUTHORS   Velasco R.
  JOURNAL   Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
            Molecular Biology, istituto agrario "San Michele all'Adige", Via
            Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
  REMARK    revised by [3]
REFERENCE   2
  AUTHORS   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
            Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
            Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
            Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
            Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
            Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
            Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
            Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
            Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
            Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
            Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
            Viola R.
  TITLE     The first genome sequence of an elite grapevine cultivar (Pinot
            noir Vitis vinifera L.): coping with a highly heterozygous genome
  JOURNAL   PLoS One 2(12), e1326-e1326(2007).
REFERENCE   3  (bases 1 to 4478)
  AUTHORS   Velasco R.
  JOURNAL   Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
            Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
            (TN) - ITALY
COMMENT     NOTE: This is a 'working draft' sequence. The true order of the
            contigs
            and the gap size among them are not known. The actual genome
            coverage is
            11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
            Sequencing
            effort has been performed by IASMA, Myriad Genetics and 454 Life
            Science.
            The gene prediction has been performed by FGENESH program in
            collaboration
            with Softberry, while the identified genes has been annotated by
            similarity search and their function has been described using Gene
            Ontology terms (www.geneontology.org).
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Vitis vinifera"
                     /chromosome="14"
                     /cultivar="Pinot Noir"
                     /mol_type="genomic DNA"
                     /clone="ENTAV 115"
                     /db_xref="taxon:29760"
     CDS             join(<165..369,584..972,1009..1284,1321..1413,1453..1788,
                     1860..1991,2037..2237,2307..2487,3838..>3873)
                     /locus_tag="VITISV_001733"
                     /product="hypothetical protein"
                     /note="GO:0003677 GO:0003676 GO:0016787"
                     /note="partially similar to EMBL:AP008210"
                     /db_xref="InterPro:IPR012337"
                     /db_xref="InterPro:IPR013103"
                     /db_xref="InterPro:IPR039537"
                     /db_xref="UniProtKB/TrEMBL:A5C217"
                     /inference="similar to DNA sequence:EMBL:AP008210"
                     /protein_id="CAN59999.1"
                     /translation="MVXLLKQKSYVXFTFQNFFHMVKNQFGXEIKRVWSDNARDYFNQ
                     VLSPFFEEKGIIHESSCTNIPQQNGVFRCISFVYIHSNNHGKLDPRALKCIFVGYSST
                     QKGYKCYHPPTKRFFDSIDVIFIETKNYFPNPYLQGEISFMEDNDRDLFLFDLSSFPS
                     SQNQNPPSSPSSFDFGPLPNELDLSTLSPMAKDKQIQSEPLIQLMQVHNSEPISSANN
                     IEVTPNSKDYESNVSIVDDYNLPIAIRKGVRKCTQQPVYQLSHFVSYEKLSSGHKSFL
                     IHLNTITIPKTVPEVEMDALEKNKTWDLVELPLGKKLVGCKWDFTARLVVKGYTQTYG
                     IDYLETFAPVAKMNTIRILLSLATNRRWSLQQIDIKNVRVITLFVKHSALGTVTVLLV
                     YANDIVVTGGDLQGMKALKRCLLQEFEVKELGRLKYFLGIEETRCXLVETPIKQNHNL
                     SHTKPNITYVVGVASQFLHNPXKVHLREVLFKKGNELTLEAYTDANYVRSIDDRRSTL
                     GYCTFLGGNLVTWRNKKQNVVTRSRAEVEFRVMALGLYCDNKSAIDITHNLVQHDRTK
                     HVEVDKHFIKEKLDSGLICTPFVSIKGQLVDVLTKELSRHCHHQYTCTML"
BASE COUNT         1459 a          847 c          791 g         1375 t
ORIGIN      
        1 ttgtgaactt gcaaaacata agcttgcttc ttttccaata agtaatacaa gagcttcgat
       61 gcctttcact cttattcata gttatgtttt gggaccttta cagttcataa tatctttagg
      121 gctcgttggt ttatctcatt tattaacaat tgtactcgag tgtcatggtt twtctcctaa
      181 aacaaaaatc atatgtcart ttcacctttc aaaatttttt ccacatggtg aaaaatcaat
      241 ttgggkttga gataaaaaga gtttggtctg acaatgctag ggattatttt aatcaagtgt
      301 tgtcaccatt cttcgaagaa aaaggaatca ttcatgagtc ttcatgcact aatataccac
      361 aacaaaatgg tgtggtataa cggaaaaatg gtcagcttct agctgctacc cgagcttttc
      421 ttttccaaaa aaatgttcca aaaaattatt ggatagaagt tgtcttaact gctacacatt
      481 tgattaatag attgcctact cgagtgcttg attataacag ccccatgcaa ctattttcaa
      541 aaaaatttcc taacttcaaa acaataaatc acttggttcc taggagtctt taggtgtata
      601 tcctttgttt atattcattc aaataaccat gggaaacttg atccaagggc tcttaagtgc
      661 atttttgtgg gatattcttc tacacaaaaa gggtacaagt gttatcatcc tccaacaaaa
      721 cggttctttg actctataga tgtaatattc attgaaacta aaaattactt tcctaatcct
      781 tatcttcagg gagagatatc attcatggaa gataatgata gagatttgtt tttgtttgat
      841 ctttcatcct tcccatcctc acaaaatcaa aatcctccat cttctccatc atcatttgat
      901 ttcggtcctt taccaaatga gttagatcta agtactctca gtccaatggc caaggataaa
      961 caaattcaaa gtgttacttg cccattgtag gtatattcaa ggaaaaagga accccttatt
     1021 caactaatgc aggttcataa ttcagaacca atctctagtg caaataatat tgaggtaact
     1081 cctaattcaa aagattatga aagtaatgtg tctattgttg atgattataa tcttcctata
     1141 gcaattagaa agggtgttag gaagtgtact caacagcctg tatatcaatt gtctcacttt
     1201 gtgtcttatg agaagttatc tagtggtcat aaaagttttc ttatccacct caacactata
     1261 actatcccaa aaactgtccc tgaagtaatg agaattaaag agtgaaaaga agctatgaag
     1321 gtggagatgg atgcacttga gaaaaacaaa acatgggact tggtggaact gcctctagga
     1381 aagaagttag taggatgtaa atgggacttt actgtgaaac ataaagcaga ttgatcactt
     1441 gaatgttata aggcaagatt agtggttaag gggtatactc aaacttatgg aatagattat
     1501 cttgaaacat ttgctcctgt tgcaaaaatg aatactataa gaatcctatt atctttagca
     1561 actaatcgtc gatggagttt gcagcaaatt gacataaaga atgttagggt gatcacattg
     1621 tttgttaaac attccgcttt agggacagtt acagttttat tagtttatgc gaatgacata
     1681 gtggtaacag gaggtgactt gcaaggaatg aaggcattga aaaggtgttt attgcaagaa
     1741 tttgaggtta aagaacttgg caggttaaaa tacttccttg gcattgaagt ggctcaccct
     1801 tgacatggga tctttatatc ccaacaaaag tatgtgttag attttttaat tgaaacaagg
     1861 aaacaaggtg traactagtg gagacaccca ttaaacagaa tcacaatctt tctcatacca
     1921 agccaaacat wacctatgtt gtaggagtgg cgagtcaatt tctgcacaac ccaawaaaag
     1981 tacatcttcg agtagcacat tgaattctac aatacttaaa cggtactcta ggaaaggaag
     2041 tgttgtttaa aaaaggtaat gaattgacat tggaagcata cacggatgca aattatgtta
     2101 gatcaattga tgatagaaga tcgactttag gttattgtac atttctcgga ggtaaccttg
     2161 taacgtggag aaacaagaag cagaatgtag ttacaaggtc aagggcagaa gttgagttta
     2221 gagttatggc attaggagtt tgtgagcttc tatgattgaa aataattttg gaagatctaa
     2281 agattgcttg aaaaggacct atgaagctat attgtgataa taagtcagca attgatatta
     2341 cacataacct tgtgcaacat gaccgcacca agcatgtgga agtagacaag cattttataa
     2401 aagagaaatt agatagcgga ctaatttgta ctccatttgt gtcaatcaag ggtcaacttg
     2461 tagatgtact aactaaagaa ttgagtcgta ctgcatttca atctattatt ttttattgga
     2521 atttcaatct tttattggca agtcgggaat agataatatt cattcaccag cttaaggggg
     2581 agtattgaaa attattacag ctatcaaata ttattacggt tgtaatatgc aactgcaaaa
     2641 gatatacaaa tgtaatatac aattgtgtaa gttgtacagt tgtgtgtaca actatatata
     2701 tgcatgtagc taggtgtata ttttatatat ataatcctca tagttgtgaa aggcgcacct
     2761 aggctcgaca ccacactttg gcgcctcgcc tgactacaag caccacccct tcacagagac
     2821 gctgattagg tacgcaaggc attcacctcc aaccaagcgt gacaccccca ataggtgcac
     2881 ctctatcctc tgtcatcatc atcttcttct tctccttcta tatttgatat atatataatc
     2941 cccatagttg tgaaaggcgt gcctagatgc gacaccacac tttggcgcct cgcctgactg
     3001 caagtgtcac cccttcacgg aggcactaat taggcgcgca aggcactcgc ctccggccaa
     3061 gcacgacgcc cctaataggt gtacctctat cctctgtcgt catcttcttc ttcttctagt
     3121 catcttctca ccctctgaca acaagttgta gagcaacaaa gggagaacga cgagagtttt
     3181 gtttttttaa tttcctaaga ccaaaacgac atcgtttaga agcctagtct ttttagggga
     3241 aaaaaaaggc aaaaacaaca ccattttggc atgttcttct tccaaaaccc aatatatgct
     3301 cattttggac ctgtgaaaca caaaaaaatg ccctagcctc ctaaacagtg agaaaaagag
     3361 aagaagacga agaaggggaa aattagagga aaatttttgg gcacttgatt aaattatata
     3421 aaaatataaa tgtgaaataa gatgcgcctc acttcactaa agcccacgcc ttaggtgtgt
     3481 cttgcgtctc aagctccaga aggactttgc gccttgagcc ttttaaaact atgataatcc
     3541 ctaatttgta gggattctcc tttattcttt actttcttcc tttttctttc ctttccgttg
     3601 ttatttatat atatatatat atatatatat atatttcatt ggttgtatac tttcaagata
     3661 tgaaaagaaa tacaattttt ctccacaatg tgctaaattt tttaacatga tttttatgtc
     3721 tgggaaaaaa acaaacacga tgctcaattg gatagccaca ctaccattgc accaacagcc
     3781 agttgttgcc accatcattg tcacctaagc aacaaaaata tcaccactac tacagctgcc
     3841 actgtcatca ccaatatact tgcaccatgc tgacgagggt acaatcatcg tgatcaccat
     3901 aagcatccta attaatgcat tggaattcaa tatactcatc caagcatgtg ttaactagtt
     3961 ttcattttct aaatctattc cagaaaagta gaaacaatca ggaaaactgg tagcaggtta
     4021 ccaaacagta taggaaatat acaaagtgcc caaacaaata aaaagaaaaa caaaaaaggt
     4081 cctataccag attaatcttc ctccattcca ccaatggaac ccgaaaaatg aattagaaac
     4141 caccatggaa ttcctagatc actcaaaagg cggtttgtga agagtctttt ttaaaacccg
     4201 atcccaactc tctaagtctt cgaagttttt gtgggtccat ccatcccaaa accattaaaa
     4261 caagcacaaa ggtgttatta tacactttct tgctcctctt tcccacaaac tctcatgcca
     4321 acagatagat tagtgacatg acagctatag ctcgggcttc agcagcgcct acaacagatc
     4381 aagtccctac tccgattttt gttttggaga ttccaatttt aggccatgac tatggctttc
     4441 cgtctaaagc taacttttcg ggtggtgcct gtgattgt
//