LOCUS AM479319 4478 bp DNA linear PLN 05-FEB-2008 DEFINITION Vitis vinifera contig VV78X107417.6, whole genome shotgun sequence. ACCESSION AM479319 VERSION AM479319.2 DBLINK BioProject:PRJEA18357 KEYWORDS . SOURCE Vitis vinifera (wine grape) ORGANISM Vitis vinifera Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis. REFERENCE 1 AUTHORS Velasco R. JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and Molecular Biology, istituto agrario "San Michele all'Adige", Via Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY. REMARK revised by [3] REFERENCE 2 AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R. TITLE The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome JOURNAL PLoS One 2(12), e1326-e1326(2007). REFERENCE 3 (bases 1 to 4478) AUTHORS Velasco R. JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige (TN) - ITALY COMMENT NOTE: This is a 'working draft' sequence. The true order of the contigs and the gap size among them are not known. The actual genome coverage is 11X, 7X sequenced by Sanger method and 4X by pyrosequencing. Sequencing effort has been performed by IASMA, Myriad Genetics and 454 Life Science. The gene prediction has been performed by FGENESH program in collaboration with Softberry, while the identified genes has been annotated by similarity search and their function has been described using Gene Ontology terms (www.geneontology.org). FEATURES Location/Qualifiers source 1..4478 /organism="Vitis vinifera" /chromosome="14" /cultivar="Pinot Noir" /mol_type="genomic DNA" /clone="ENTAV 115" /db_xref="taxon:29760" CDS join(<165..369,584..972,1009..1284,1321..1413,1453..1788, 1860..1991,2037..2237,2307..2487,3838..>3873) /locus_tag="VITISV_001733" /product="hypothetical protein" /note="GO:0003677 GO:0003676 GO:0016787" /note="partially similar to EMBL:AP008210" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR013103" /db_xref="InterPro:IPR039537" /db_xref="UniProtKB/TrEMBL:A5C217" /inference="similar to DNA sequence:EMBL:AP008210" /protein_id="CAN59999.1" /translation="MVXLLKQKSYVXFTFQNFFHMVKNQFGXEIKRVWSDNARDYFNQ VLSPFFEEKGIIHESSCTNIPQQNGVFRCISFVYIHSNNHGKLDPRALKCIFVGYSST QKGYKCYHPPTKRFFDSIDVIFIETKNYFPNPYLQGEISFMEDNDRDLFLFDLSSFPS SQNQNPPSSPSSFDFGPLPNELDLSTLSPMAKDKQIQSEPLIQLMQVHNSEPISSANN IEVTPNSKDYESNVSIVDDYNLPIAIRKGVRKCTQQPVYQLSHFVSYEKLSSGHKSFL IHLNTITIPKTVPEVEMDALEKNKTWDLVELPLGKKLVGCKWDFTARLVVKGYTQTYG IDYLETFAPVAKMNTIRILLSLATNRRWSLQQIDIKNVRVITLFVKHSALGTVTVLLV YANDIVVTGGDLQGMKALKRCLLQEFEVKELGRLKYFLGIEETRCXLVETPIKQNHNL SHTKPNITYVVGVASQFLHNPXKVHLREVLFKKGNELTLEAYTDANYVRSIDDRRSTL GYCTFLGGNLVTWRNKKQNVVTRSRAEVEFRVMALGLYCDNKSAIDITHNLVQHDRTK HVEVDKHFIKEKLDSGLICTPFVSIKGQLVDVLTKELSRHCHHQYTCTML" BASE COUNT 1459 a 847 c 791 g 1375 t ORIGIN 1 ttgtgaactt gcaaaacata agcttgcttc ttttccaata agtaatacaa gagcttcgat 61 gcctttcact cttattcata gttatgtttt gggaccttta cagttcataa tatctttagg 121 gctcgttggt ttatctcatt tattaacaat tgtactcgag tgtcatggtt twtctcctaa 181 aacaaaaatc atatgtcart ttcacctttc aaaatttttt ccacatggtg aaaaatcaat 241 ttgggkttga gataaaaaga gtttggtctg acaatgctag ggattatttt aatcaagtgt 301 tgtcaccatt cttcgaagaa aaaggaatca ttcatgagtc ttcatgcact aatataccac 361 aacaaaatgg tgtggtataa cggaaaaatg gtcagcttct agctgctacc cgagcttttc 421 ttttccaaaa aaatgttcca aaaaattatt ggatagaagt tgtcttaact gctacacatt 481 tgattaatag attgcctact cgagtgcttg attataacag ccccatgcaa ctattttcaa 541 aaaaatttcc taacttcaaa acaataaatc acttggttcc taggagtctt taggtgtata 601 tcctttgttt atattcattc aaataaccat gggaaacttg atccaagggc tcttaagtgc 661 atttttgtgg gatattcttc tacacaaaaa gggtacaagt gttatcatcc tccaacaaaa 721 cggttctttg actctataga tgtaatattc attgaaacta aaaattactt tcctaatcct 781 tatcttcagg gagagatatc attcatggaa gataatgata gagatttgtt tttgtttgat 841 ctttcatcct tcccatcctc acaaaatcaa aatcctccat cttctccatc atcatttgat 901 ttcggtcctt taccaaatga gttagatcta agtactctca gtccaatggc caaggataaa 961 caaattcaaa gtgttacttg cccattgtag gtatattcaa ggaaaaagga accccttatt 1021 caactaatgc aggttcataa ttcagaacca atctctagtg caaataatat tgaggtaact 1081 cctaattcaa aagattatga aagtaatgtg tctattgttg atgattataa tcttcctata 1141 gcaattagaa agggtgttag gaagtgtact caacagcctg tatatcaatt gtctcacttt 1201 gtgtcttatg agaagttatc tagtggtcat aaaagttttc ttatccacct caacactata 1261 actatcccaa aaactgtccc tgaagtaatg agaattaaag agtgaaaaga agctatgaag 1321 gtggagatgg atgcacttga gaaaaacaaa acatgggact tggtggaact gcctctagga 1381 aagaagttag taggatgtaa atgggacttt actgtgaaac ataaagcaga ttgatcactt 1441 gaatgttata aggcaagatt agtggttaag gggtatactc aaacttatgg aatagattat 1501 cttgaaacat ttgctcctgt tgcaaaaatg aatactataa gaatcctatt atctttagca 1561 actaatcgtc gatggagttt gcagcaaatt gacataaaga atgttagggt gatcacattg 1621 tttgttaaac attccgcttt agggacagtt acagttttat tagtttatgc gaatgacata 1681 gtggtaacag gaggtgactt gcaaggaatg aaggcattga aaaggtgttt attgcaagaa 1741 tttgaggtta aagaacttgg caggttaaaa tacttccttg gcattgaagt ggctcaccct 1801 tgacatggga tctttatatc ccaacaaaag tatgtgttag attttttaat tgaaacaagg 1861 aaacaaggtg traactagtg gagacaccca ttaaacagaa tcacaatctt tctcatacca 1921 agccaaacat wacctatgtt gtaggagtgg cgagtcaatt tctgcacaac ccaawaaaag 1981 tacatcttcg agtagcacat tgaattctac aatacttaaa cggtactcta ggaaaggaag 2041 tgttgtttaa aaaaggtaat gaattgacat tggaagcata cacggatgca aattatgtta 2101 gatcaattga tgatagaaga tcgactttag gttattgtac atttctcgga ggtaaccttg 2161 taacgtggag aaacaagaag cagaatgtag ttacaaggtc aagggcagaa gttgagttta 2221 gagttatggc attaggagtt tgtgagcttc tatgattgaa aataattttg gaagatctaa 2281 agattgcttg aaaaggacct atgaagctat attgtgataa taagtcagca attgatatta 2341 cacataacct tgtgcaacat gaccgcacca agcatgtgga agtagacaag cattttataa 2401 aagagaaatt agatagcgga ctaatttgta ctccatttgt gtcaatcaag ggtcaacttg 2461 tagatgtact aactaaagaa ttgagtcgta ctgcatttca atctattatt ttttattgga 2521 atttcaatct tttattggca agtcgggaat agataatatt cattcaccag cttaaggggg 2581 agtattgaaa attattacag ctatcaaata ttattacggt tgtaatatgc aactgcaaaa 2641 gatatacaaa tgtaatatac aattgtgtaa gttgtacagt tgtgtgtaca actatatata 2701 tgcatgtagc taggtgtata ttttatatat ataatcctca tagttgtgaa aggcgcacct 2761 aggctcgaca ccacactttg gcgcctcgcc tgactacaag caccacccct tcacagagac 2821 gctgattagg tacgcaaggc attcacctcc aaccaagcgt gacaccccca ataggtgcac 2881 ctctatcctc tgtcatcatc atcttcttct tctccttcta tatttgatat atatataatc 2941 cccatagttg tgaaaggcgt gcctagatgc gacaccacac tttggcgcct cgcctgactg 3001 caagtgtcac cccttcacgg aggcactaat taggcgcgca aggcactcgc ctccggccaa 3061 gcacgacgcc cctaataggt gtacctctat cctctgtcgt catcttcttc ttcttctagt 3121 catcttctca ccctctgaca acaagttgta gagcaacaaa gggagaacga cgagagtttt 3181 gtttttttaa tttcctaaga ccaaaacgac atcgtttaga agcctagtct ttttagggga 3241 aaaaaaaggc aaaaacaaca ccattttggc atgttcttct tccaaaaccc aatatatgct 3301 cattttggac ctgtgaaaca caaaaaaatg ccctagcctc ctaaacagtg agaaaaagag 3361 aagaagacga agaaggggaa aattagagga aaatttttgg gcacttgatt aaattatata 3421 aaaatataaa tgtgaaataa gatgcgcctc acttcactaa agcccacgcc ttaggtgtgt 3481 cttgcgtctc aagctccaga aggactttgc gccttgagcc ttttaaaact atgataatcc 3541 ctaatttgta gggattctcc tttattcttt actttcttcc tttttctttc ctttccgttg 3601 ttatttatat atatatatat atatatatat atatttcatt ggttgtatac tttcaagata 3661 tgaaaagaaa tacaattttt ctccacaatg tgctaaattt tttaacatga tttttatgtc 3721 tgggaaaaaa acaaacacga tgctcaattg gatagccaca ctaccattgc accaacagcc 3781 agttgttgcc accatcattg tcacctaagc aacaaaaata tcaccactac tacagctgcc 3841 actgtcatca ccaatatact tgcaccatgc tgacgagggt acaatcatcg tgatcaccat 3901 aagcatccta attaatgcat tggaattcaa tatactcatc caagcatgtg ttaactagtt 3961 ttcattttct aaatctattc cagaaaagta gaaacaatca ggaaaactgg tagcaggtta 4021 ccaaacagta taggaaatat acaaagtgcc caaacaaata aaaagaaaaa caaaaaaggt 4081 cctataccag attaatcttc ctccattcca ccaatggaac ccgaaaaatg aattagaaac 4141 caccatggaa ttcctagatc actcaaaagg cggtttgtga agagtctttt ttaaaacccg 4201 atcccaactc tctaagtctt cgaagttttt gtgggtccat ccatcccaaa accattaaaa 4261 caagcacaaa ggtgttatta tacactttct tgctcctctt tcccacaaac tctcatgcca 4321 acagatagat tagtgacatg acagctatag ctcgggcttc agcagcgcct acaacagatc 4381 aagtccctac tccgattttt gttttggaga ttccaatttt aggccatgac tatggctttc 4441 cgtctaaagc taacttttcg ggtggtgcct gtgattgt //