LOCUS AM477614 9314 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X259520.13, whole genome shotgun
sequence.
ACCESSION AM477614
VERSION AM477614.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 9314)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..9314
/organism="Vitis vinifera"
/chromosome="13"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS 3529..5148
/locus_tag="VITISV_015736"
/product="hypothetical protein"
/note="GO:0003677 GO:0003676 GO:0016787 GO:0008270"
/note="partially similar to EMBL:AP008214"
/db_xref="InterPro:IPR013103"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5C0D7"
/inference="similar to DNA sequence:EMBL:AP008214"
/experiment="confirmed by EST"
/protein_id="CAN68502.1"
/translation="MSNYVFNHCLSESNKPFVNQLSTVVIPNSVQEVLTDPRWKAAMN
EEMKSFQKNETWELVECLSGKKPVGCRWIYIVKYKADDSIERFKSRLVAKGYTQTYGI
DYTGTFAPVAKINTVQVLLSLAANLDWPLQQFDVKNAFLHGELSEEVYIDLPPGCMVL
EKQCQKVCKLKKSLYRLKQSQRAWFGRFTKLMRAFGYRQSNSDHTLFLKKQHGKITTL
IIYVDDMVVTGNDPEERKALQNYLFREFEMKDLGPLKYFLGIEVSRSSEGIFLSQRKY
ALNLLQETGMSGCQPVNTPIGEGLKLCVELNQVSTDKGRYQRLVGRLMYLTHTRPDIA
YALSVVSQYMHNPREQHMNAVMRILRYLKNASGKGILFTKNVDHQSIEVYTDADWASA
VDDRRSTSGYFTFVGGNLVTWKSKKQNVVARSSAEAEFRGMALGLCEALWLRLLLQDL
GYLSRQPIQLLCDNKAACDIAHNLVQHDRTKHVEVDRFFIKEKLDDKIVELPKIRSEN
QLADILTKAVSSQVFSKFLDKLGMCDIYAPT"
BASE COUNT 3173 a 1390 c 1689 g 3002 t
ORIGIN
1 tgttttatct tattaaaaga tatccagaaa agctatgttt ggttcctaga aaatttaagg
61 aaaatgttga tagagatata ctattaacca tgcataagcg tgaatttaat agtatgttat
121 tatgatgtca ttctataaac aattatttct ttgtatttaa ttggagattt gcattagata
181 aattaatctt tcggcataat ttaataataa ttgtgttagt atattttata tataactaac
241 tggaccaagt aragaatgga tgttttgtac tgactgttaa aacatattct ctaggacatt
301 agaaataaga tttatgtttt taatcatgat ttaattaata tgagcaaata taaaatatct
361 tgtgttttga ttcattaaag agtgagtttc atttattgga gcgataagac tcgatgartt
421 ggacaaagac gctttatgtt tgcgatgtat taaataatga ttgaatccac gtctcggtat
481 agagattgat gatgcacttt aagtaagctt ataaggtttc atagtataaa ccctgcaggt
541 ggatttttat ccgacacatg aattaagtta agcgaaaatc ttgaagatct attgttactc
601 aaataaattg tcagtaattt gtttgatgta aatagcatct gtaatcttaa cgtgggaaac
661 ataaattatt atgtaatgga attgtaagat taataaggag ttcaatcatg aatttttagt
721 ggtataattt gtgattaatt atartgagaa tatactggtc ctgtatgaat tcttattata
781 attagtagcc ttgttaattt tattcctgcg gtccctgctr tgccttaatt gtttggacta
841 tacatgaatt atgtgtttta aataaatgat agattagttt ttaattaaat tttatttaat
901 taaaaataga taatctaatt tatttaaaat gagcatttta agggaaaaag agtcacgctt
961 atatcgattt ttcttgaagc aaattatacg ctcaagagtt tctaagaaag cggtcttctt
1021 cccatcgaag agagatatat tagaaacaga aaagagagtg acaaaaccct agcgattgtt
1081 tttggccact cagaaatcat agtccggaaa ttgataaggt aaacagcaga agattgtagg
1141 agattgtggg tgttttcagc agagaaaaag gtcagtcttt tacatatggt tttgcctcca
1201 tgcttgtttc atcatgattt gtttctgctg cataaatcat ggtttctatc accaagacct
1261 tccgagatcc atcatctgta atgttgatgg agtcaatccc aagttccttg aaattggcaa
1321 aagaaagaaa gagcatcaac aaaatggtga cgaggccttc actaaaggtg cctactatat
1381 attcgaaaaa tggtgtggga caaaggctac aaggagctac tcaaacttct tcatgatcac
1441 caaaaggaac taactggact tgaggttgat ttatatggta atggggagga ttcagatcaa
1501 gttcaggaag ttgccaaaaa attggaacta gacgtcagag ttcaccctag gcgtgatcat
1561 gcggatccac tatttcacga gtaaactcct tatgatctat tcacatccag acatcaattt
1621 aatcataagt tttttctctg atggaaatga agaaaatgaa attgcatttg ccttctaatg
1681 caatgcatcg gcccgaagtt gagagtgctg ataaccttag ttgttgcgta ttgtgcactt
1741 ttgactaaca ctatggttcc cgggacacca aagcttgggt ctatttggac tcttggtcat
1801 tttatttttc taacacccaa aagaatgcaa acatgaggaa atatcacgtg tttcaatcac
1861 actagtgttt gtattgaatt gatcctggca gacaatgttg tgccagtatg aattcagctg
1921 tgctgaattg tatcttctga ctactaatgg ccaggatgat tcatagtgac ccattaaggg
1981 tacatattct ccgaaactac tgttttttgt ttctcaatgt tttccatttt tgcagttatg
2041 accaacattg cataccacat cgctatgtac tctataacaa aaaaactcct cctatattcc
2101 ctttcatctt ctaattattc ttattattta aaataataat aaaaaaatcc tgagaataga
2161 ttgaaggatt atagtgattt tattatagat gacaatacag tttttgagga attgaagttg
2221 acaggaaata tatttctttc attctctgca atgtacctgt tagtcctgtt gagatattag
2281 gaatgctttc cgtatatcat tctttcctta tattatttag tgttgagata ttaggaatgt
2341 ttaaatatta ggaaagttga gatattawga atattgagat attrrgaata ttgagatatt
2401 aggaaagttg agatattagg atattagttg ttatttcctt atatcattct ttcccattct
2461 tagaatggtg attaccctct atatatactc tatacatgaa cgaatgaaat aatgaatgaa
2521 aaaactacca tttatcaatt tgaagctggt atcagagctt gggttgaaga tttctggaag
2581 agtaaaagat cataaagcac acaagatgaa aacaaaagga attttcactg aaggtggagt
2641 cgattgctct ttcgtgatga tatgatacaa aaaggcttat gtcatggaga gattgaagat
2701 taacttcatg taatttggtc caaggtggag attgttagga agtgtcccaa attcctaatt
2761 agtatagatt cctttttttg taaagaatat tatgtagaat atttctaggt tgatatatta
2821 ttgtaatatt agacttcctt atagaataag gaaggttgtt ggaaatatct ttataaatat
2881 tctaggtcat gaggggaaaa aatcatgaga tggagatggg cctatagaga ctatacgagg
2941 tggatagaga tgtgaggaag aacgtgaggt acctggtgga gcgagagggc tcgtagtaag
3001 gtatggatac aaggagtggg aaaacatggg atgtttcggg aacccaatag ttgtatctgg
3061 ttctatcctc tataatattc tctattatat agtggaatta ttctctctca tcattggacg
3121 taggcatggt tggccgaacc acgttaaaac ctcatgtacc gtatgtgtga ttgttttatc
3181 tttgtgttct tgaactaaca ttgttggcat caaagctttc gctggcatga acttcagggg
3241 gagtaacata aggaaattca gactctcgat tatgattatc atatctctga ggatgatgaa
3301 tctggacaat ctgaactagt gaaccaggaa acgggtgagt tggatatgag tggtcaacaa
3361 tttgggtccg aagatgtctt cactgaaata ccaaaccaat catcgtctac tgagggtgtt
3421 cttaannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnntcataa tagaggtatt
3481 cctaaaccca catammaacc tgaattgtct accaaagtca aatatcccat gagcaactat
3541 gtgtttaacc attgtttgtc tgaatcaaat aagccatttg taaatcaatt atctactgta
3601 gttattccta acagtgtgca agaagtctta actgatccaa ggtggaaagc agccatgaat
3661 gaagagatga aatcattcca gaagaatgaa acatgggaac tcgtagaatg tctatcagga
3721 aagaagccag ttgggtgtcg ttggatctat attgtgaagt acaaggcaga tgatagtatt
3781 gaacgattta aatcaagact ggtagcaaaa gggtacactc aaacttatgg aattgactac
3841 acagggacat ttgcacctgt agctaaaatc aacacagttc aagtattact gtctttagct
3901 gcaaacctag attggccatt acaacagttc gatgtgaaaa atgcctttct gcatggtgag
3961 ttatctgaag aagtatatat agatcttcca ccaggatgca tggtgttaga aaaacaatgt
4021 cagaaggtgt gcaaattgaa gaagtcattg tataggttaa agcaatccca gagagcatgg
4081 tttggaaggt tcacaaaatt aatgagagct tttggctatc gtcaaagtaa ttcagatcac
4141 actttgttct tgaaaaagca acatggtaag attacgacac ttatcatata tgtggatgac
4201 atggtagtta caggaaatga tcctgaagaa agaaaagctt tgcaaaatta tctatttaga
4261 gaattcgaaa tgaaagatct aggtcctctg aaatactttc ttgggattga agtttctcga
4321 tcaagtgaag gaatttttct atctcaaaga aagtatgcct taaatctttt acaggagact
4381 ggaatgtcgg gatgtcaacc tgttaataca ccaataggag aaggtctgaa attgtgtgtt
4441 gagcttaatc aagtatcaac cgataaggga agataccaga gacttgtggg gagattaatg
4501 tacttaactc atacaagacc agatattgct tatgcattga gtgtagtgag tcaatacatg
4561 cataatccta gagagcaaca tatgaatgca gtcatgcgta ttttgaggta tttgaagaat
4621 gcttctggga agggaatttt gttcactaaa aatgttgatc atcagagtat agaagtatat
4681 actgatgctg attgggccag tgcagtggat gataggcgat ctacatctgg ttactttacc
4741 tttgtaggtg gtaatcttgt gacatggaaa agtaagaagc agaatgtcgt cgctcgttca
4801 agtgcagaag cggaatttag aggtatggct ctaggacttt gtgaggcatt atggctaaga
4861 ctcctcttac aggatttagg ttacctatct aggcaaccaa tccaattgct ttgtgacaat
4921 aaagccgcat gtgatattgc tcataatcta gtacaacatg atcgtacaaa gcatgtcgag
4981 gtggatagat tcttcattaa agaaaagttg gatgataaga ttgtggaatt gcctaagatt
5041 cgatcagaaa atcaattggc cgatatactc accaaagctg tctcaagtca agtgttctca
5101 aaatttttag acaagttggg catgtgtgac atctatgcac caacttgagg gggagtgttg
5161 aaatattagg aatgttttcc ttatatcatt ctttccttgt atcatttagt gttgaaatgt
5221 taggaatgtt tagatattag gaaagttgag atattaggaa tattgagata ttaggaaagt
5281 tgagatatta ggatattagt tgtgattcgc gtgtaactcc aaatgggtca tttaatcaaa
5341 aacatttata aaacctatga cctcatacta agtayaaakc tactatagta tagtggctct
5401 agggtcgwac tctgggatgg gttttcattc taccagtgat ataytcaaaa ttagaaattg
5461 tatttaatga tttccttaat caaaaactta aagtttaaaa gaaaayaaaa tttgttttga
5521 aagtgtttga aactmaacta acataaacta attaaaaatg gaagaaagaa agtctcccgg
5581 agctaagggt tgctaggatc aagttcagaa tagaaagtgg aaaattccgg atttttctcc
5641 tcgcattggg gatttaacct atagttattt cccgaaccgg tataggtttg acaatgaaga
5701 tttaatccat aaaagatcaa tagaaatggt agtcaaggtc cattaatggc ttaagacact
5761 atgggtcttc accttgaatc actttccaat gactcgtaca tgataactaa tggactaata
5821 tgaatctagc aataagcatc cataaagacc tgaagcttac catgtattgg tcattcaaag
5881 tgattctaag gggtttaaag caaaactttg gatttagaaa ccatttatga attccaacta
5941 cctgaattta atgcatggaa gctttccacc ttttcatctg gacttttcac ctagcttcct
6001 ttactccaag aaaccgaaag tttagcctct catcctccgg gcaaacatcc ttagaggttg
6061 tttggcttcc aagaaaaaga aaataataaa gagaaaagag aacgagagag ctctgtaaaa
6121 ttctaagtgt aaaaacgtaa tacgtattcc atatattcca agaggtgatt tccacccctt
6181 ataaagtctt tacaaaagct aaagcttatg attggttaat tacaaggata ataaaggaaa
6241 ttacatcaca aaatacaaag gaaaatatct aaagtggagt cggcaaaggg cagagcaaaa
6301 ttcgcaacac gcataggtta tgcgaaccat atgcgaatgt tatgcgaatt tcgcataacc
6361 tcttgtggaa tgcgaaattt tcgcataacc tggagcagtt ggcttccgaa ggtcatatct
6421 tcctcatttc agctccaaat catacacggt ttgaagcgtt gtattcttga cttccagagc
6481 tttgaaatgg tatatggcat gtaaaaaatg gacttcggaa agtgctccaa aagtgtgaaa
6541 gaagactgca gctgctacat cttgattttt tttcactttg cttctctttg cttctctcct
6601 ttgcttgact tgtcttaatg atccaaaaag ctgttaaaaa cattaaaact agccacaaat
6661 atgattagaa gacattgcta ggtccttaac atgccaattg gactaaagat ggagaactac
6721 tacacaaaag tgcttaaaac ataatgcatt aaaggtgtaa aatagcactt tttgggtagt
6781 aatcaagttg ttatttcctt atatcattct ttcccattct tagaatggtg attaccctct
6841 atatatactc tgtacatgaa caaatgaaag aatgaatgaa aaaactacca tttatcaatt
6901 tgaagaaaaa gatgattaaa agaattatta ctcttattac catcaaatat gtttaatatt
6961 ttttaacatt aaaataaatt gaatatttat ttatattttt agaagtctag gaatatggca
7021 ttaaaatgtt ctcaaatttt aaaaaccaaa tcaaagaagt aactcatatc acatgtggca
7081 ttgtcttgca acaactcaaa tcatatctaa tcaaatcgct aaatgctatt gaaactcaat
7141 ttgcaatatc agatactagg ctataatgat tcttattcac acagatttgg accaacttct
7201 ctgctaccgt tgttatcttt tgctctcctt tctttattat gttctcactc aattcttttg
7261 tttttcttct tacatcttct cttgttctct aaacaaccaa gtcttcaatc acttttgtta
7321 tctcctccct ttcaagtttt ccactcccat ctttttttat cttaataccc acaccaattg
7381 attccacaag tttagcattc actagctgat caagatgcat tggcatggct aaaattggaa
7441 cccagacttc atgttttcca ctacaaaact ccatccacaa tgactcacaa attaaaccac
7501 cgatgcttga atgtcccata attttctttt gaggaaacca tccctccatg accattcttc
7561 gctctcctac ctaagaaacc ctttttggca atgccttttc aaccctagtt ttgtgttcat
7621 gagaagaaat cattgcccat aggaaattaa ccttgcttag ctttagcttc aactaccaaa
7681 agtcttgaag aaaaatctct gggaaaaaga tacacaactt cgagactctt agttatatga
7741 aatatgaaaa acataattgc agctccaaat attgaaaaga aaatagcagg aatattatgt
7801 gaggaagttg tagtcggtgc ccatggttgg aagccatcat atataaccag atccgggttt
7861 aaagtcttta ggatatcgat aaaaatgggg cttgttgtaa tgatcaggta ttttagacca
7921 ccttagaatt tcaagtttga aaagtcttct attagacggt agttgaaaag tcaaaaaagt
7981 gattggaaaa catgtgtcaa ttttggattg atagaattcg aaatattttg ttggtcaatt
8041 aagtgagttg aatttttttg tgccatgtta gctttatggt agaaattttc taaagatcat
8101 agaaattaaa attttctgaa aatgaaaagc gaaaaaaaaa caaaaacgaa aaatgaaaaa
8161 aatgaattaa ttaaaattaa ttagaactaa ttaaataaaa attaaattaa attgcttaat
8221 aataaatttg agaaaattaa aatttttgag attgtgtttg ataatttatt tcgtgtgttg
8281 cttaaaaaaa atgaaatgaa aaatgaatta agaaaataaa ataaattgaa ttggaaaaag
8341 aaaatagtgt awaaactaaa tatatatata tatatatata tatatatata tatatatata
8401 tatatatata takatagata gatagatagk awcamaccca caattatcac tgtaatggtc
8461 aaagtttttt tttacatctg taaaaaatat gacattgggt ttttkgtttt tcacttagtt
8521 tagaatttgt tattgaaata tacattttag aattgaatgt gaaattggag tagtcctact
8581 agagatgaga tttccaatac cttttctgag acatcttgtg aggtaagagc atgacaagtc
8641 atttctcgaa attcccataa gtccttgaag ttgaattcaa agttaggaaa tttaatagta
8701 gaaatagaaa catttaaaat taatttctaa aaacaaagtg ataaagaaag cattttgcaa
8761 gcatacttaa gcaagactaa catgagtgag atatatgacc acctaactat tatgaactaa
8821 aaagcaacca tagttggatc accagtgtca agatatttgt gagatagaaa ggttgcaaca
8881 taatacttaa gaaaccaaaa aaaaaaaagc aattaggttt gttgcctctg gtaattgttt
8941 gacaaagtaa gaaatgtggt caaacatcaa gcatttaata gccaaatgtg ttaaacctaa
9001 acaaacaagt taatagataa atattgatca tgcaccaacc cttgtagatt tagcttcaaa
9061 ctccattagg gactaatcat ttctaaattt tgttccctca tatgtctttt tgcttgttaa
9121 cctaattgtt catttttggt ttggaaatga aatttctaaa tggagaccaa cctagctcca
9181 catgaagcac tatggagcta actcatagac tataatgaag atcgaaaaga ctagcatttg
9241 gctaaattag acctatacaa ctaatcaata gttttaaaat tactaattaa aaagacaact
9301 tttccctact aatt
//