LOCUS AM475570 8377 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X045062.14, whole genome shotgun
sequence.
ACCESSION AM475570
VERSION AM475570.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 8377)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..8377
/organism="Vitis vinifera"
/chromosome="9"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(528..632,664..697,1087..1157,1253..1424,
1529..1734,1947..2039,2322..2618,2689..3010,3121..3232,
3377..3515,3886..3921,3998..4063,4105..4159,4269..4585,
4671..4901,5172..5281,5312..5401,5580..5670,5883..5959,
6075..6234,6362..6380,6419..6750))
/locus_tag="VITISV_038016"
/product="hypothetical protein"
/note="GO:0017111 GO:0016787 GO:0016887 GO:0005524
GO:0000166 GO:0016020 GO:0006810"
/note="highly similar to EMBL:AP008208"
/db_xref="GOA:A5BYA5"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013525"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR034003"
/db_xref="UniProtKB/TrEMBL:A5BYA5"
/inference="similar to DNA sequence:EMBL:AP008208"
/protein_id="CAN75124.1"
/translation="MASAEITRTGASLRRTGSRFWTSSGREVFSRSARDEDDEEALKW
AVIQKLPTYNRLKKGLLKGSEGDFSEVDIQNLGSRENKNLLERLVKTAILKVHHDFLH
NQTSFYDFLVGIVLPVTGKVTYNGHGMEEFVPQRTAAYIGQHDNHIGEMTVRETLAFS
AICQGVGFRYEMLAELARREKEANIKPDPDIDVFMKILGLHVCADTMVGNAMLRGISG
GQKKRITTGEMLVGPATVLFMDEISTGLDSSTTYQIVNWTAFISLLQSTPETYDLFYE
IILLSDSMIVYQGPRENICYSQRIRDAFQSLYVGLKLAEEPIPFDKTESHPAALTTKN
YGVSNKELMSACTAREALPMRRNSFIYLFKLFLANPLLLMAFVGLTLFLRVQMHRRTV
EDGNVYASDLFFTVIAIMFNGMVEIVLIIEKLGVFYKQRDLLFYPPWPSALPTWILKI
PITVVEVALWVAMTYNPTGLDPNAGRFFRQLFLPHASQSDVICNPPQWGHLLYLFFSH
RVVLSCHEIVSNPGGYGVTILRCIEICANFAAYEKPQAMLTDESENDQPPSNTLRTAS
AGVMKPIREAITEEGSQDKKKGMVLPFEPYCITFEEIRYSRLTCQRQGVPGDKLELLK
GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKSGGYIEGNISISGYPKKQETFARIS
GYCEQNDIHSPHVTVYESLLYSAWLRLPPDVKSKTRKMFNMEVMDLVELTPLKNALVG
LPGVNLSTEQRKRLTIAVEPVANPSTIFMDEPTSGPDARAAAIVMRTMRNAVDTGRTV
VCAIHQPSIDIFEAFDEVGNGIEGVSKIEDGYNPATWMLEVSTAAQEVTMGELSQPPP
GSKELYFSSRYSQPFLIQCMACLWKQRQSYWRNTSYTAVRFAFTLVISLMFGTIFWKL
GNKWSMPTKLSNAMGSMHAAVIFIGLQNSASVQPVVDVERTVFYRELAAGMYSALAYA
FSQAIVEIPYIFSQTVLYGVLVYAMISRSSIWKRSNSEHDFLGATAAVVIGFTLLFLF
VFVVAIKLFDFQKR"
BASE COUNT 2735 a 1649 c 1430 g 2557 t
ORIGIN
1 agcgtactta aaaggggaga atgttgatgt atgagttaat gtactgcaat ttgttcttaa
61 tactacaacc atagtcatgg ctataatctt gagagataga gagcttggat agaaagaaag
121 aaatgtgttg agcaaacttc cttttttttt ttttgctatg cctgtgagtg tgccctgttt
181 tgctttgctc tgtttttctt gtttctttct ctagagatat gcaagccttc atttacgaac
241 agccagtagc ttgggcagca tcaacagcaa accatccaaa attaggtgta ccttacatac
301 atgtaatttg gaaagtaatc aaggatcaaa gaattgcatg cataaacttt tgttgttctc
361 gtgaatttga atttcaaacc ccataaaatt gctaggggat caacaaaatg ccagaatata
421 acatctttat tgctttactg aacctgctca ttgcagggtt agaatcaaat gtgtcgaact
481 gaaagggtta cacccataca cgttaagcta ccatctccaa acacctttta tcgcttttgg
541 aagtcaaata acttgatggc aacaacgaag acgaataaga acaacaatgt aaagccgatt
601 accacagctg cagttgctcc caggaaatca tgcttcaatc cataataatc ctccaggaat
661 tacctcactg tttgaccttt tccagataga ggatcgtcta tatctccgaa ttgtgattca
721 accattccat acaaggtcca tgcaactgga cagagccagt aataccaaat tcaccactcg
781 ggaatcctct gttaatattc atcacggaag aaaagcaaca gaatgagtcg ttgacataac
841 catgtatgct gatattgata aggcaagctt gtgttttaaa gagttatggg ttgagagtac
901 ttagggttcg ggggactaca aaacccgaaa agaggttcca tgatgcggaa aatactccgg
961 caaaatcata gaaaaatttt gattcggtgt taaagaaaca gccatcatgc cggagtaggt
1021 gaagtagagc aaggtgaaga acatgtagaa gagataccag aagaacttgg cggctgtcca
1081 ttgaacgaaa tcattgcata aaccagaacc ccatataaca cagtttgtga aaaaatgtac
1141 gggatctcaa caatagcctg taataggaga agaaatttta ctaacgargg acatagaaaa
1201 cattacaaat gtaaaaaagt ctacatakat atagcatgag agatctagtt acctgtgaga
1261 aggcataggc cagtgctgaa tacattccgg cagctagttc tctgtaaaag actgttcgtt
1321 caacatccac gactggctgc accgatgcgg aattttgaag cccaatgaag ataacagcag
1381 catgcataga acccatcgca ttagacagtt ttgttggcat tgacctgcca tgttttacct
1441 tgtgaattat aaattgaagt tgatgtatgt agagaaacaa catatatact gagtaattct
1501 caaagttttt ggactgattt caaattacca tttgttgccc agcttccaga atattgtccc
1561 aaacatcaag gatatgacaa gtgtgaaggc aaatctcact gcagtgtacg atgtgttgcg
1621 ccagtatgac tggcgttgtt tccataagca tgccatacat tgaatcaaga agggctggga
1681 gtatcgacta gagaaataga gctcctttga accaggggga ggttggctca gttccttaat
1741 tatatctatg tttctcctga aaagatggca catggtacaa aaggcttcaa caacaatttt
1801 aagctttcat gatgaacatt gagatggctg gtatatatat acatataggt atagatatga
1861 catttcaatc tcataatgca ttcagataga ctatagttga atcacctcta taggtctgaa
1921 tttttgtata attcattgaa atcgaccccc atggtcactt cttgtgccgc agtggaaact
1981 tccaacatcc aagttgcagg gttataaccg tcctcgattt tactgactcc ttcaattccc
2041 tttatgaaag caagtgatta tatgtacatg tgttagtaag tgcttgatat gaatgaactc
2101 aaatcgaacc atttgctgcc catagctttt atttcgtcac cgcagcttac ctcaaagtag
2161 gctatcagat ggcaagaatg tctacccact ggtcccacat attaacccat tttcaaatac
2221 tatttcagta attgcagaag aatatatata tatatatata tagagagaga gagagagaga
2281 gagaaagaga gagagtcaaa aactcttttc tatctattaa catttcccac ctcatcaaag
2341 gcttcaaaaa tgtcaatact tggctgatgg atggcgcaca ccactgttct tcctgtgtcc
2401 actgcgttcc tcattgttct cataacaata gcagcagctc ttgcatctgg ccctgaagtt
2461 ggctcgtcca tgaatatagt ggagggattt gccacaggct caactgcaat ggtcagcctc
2521 ttgcgctgct cggttgagag atttactcct ggcagcccaa ctagtgcatt cttcaatggg
2581 gtcaattcca ccagatccat gacttccata ttgaacatct gtaaccatta gcaatgatta
2641 catatttgtt taagaaacag tccagaaaaa aattctggag attcccacct ttctggtttt
2701 agatttcaca tcaggaggca accgcagcca agctgagtag agcaaggact catagacggt
2761 aacatgagga gagtggatgt cattctgctc acagtatcca gaaatccgag caaaagtctc
2821 ttgcttcttt gggtagccgg aaatggagat gttaccctca atatacccac cagatttccg
2881 accagccagt acatccatga gagtggtttt accagcaccg ctaacaccca tcagagctgt
2941 aagaacacca ggcctgaaag caccactcac ccccttcaga agctccaatt tgtccccagg
3001 aacaccctgg cttttcattt cctgcaagtt ccattcccac aacttagttc tgattttcgt
3061 ttatggtaca ttatgaaacc catatacatt atcaattagt atagatatga attaagttac
3121 cgctggcatg tcaaccgaga gtatctgatt tcctcaaagg tgatacaata tggttcgaat
3181 ggaagaacca tccctttttt cttgtcctgg ctaccctcct cagtgatggc ttctgtcctc
3241 ccagatgagg tggttccctc atttctgttc ggtagtctct ctgcatctgc atgtcaaaag
3301 ttcaaaccta ataattagcc atatagaaca tgtagtaaaa tgagaagagc acaggcacac
3361 aaaggaatgc atacaccacg tatgggtttc atcacacctg cggatgcagt ccggagagtg
3421 ttggaaggag gttggtcatt ctcggactcg tctgttaaca tagcttgagg cttctcatat
3481 gctgcaaaat ttgcacaaat ctcaatacac ctaagctcca atgtttagga gttccaaagc
3541 agagaagtaa agataaagat acccacgatt taggaacatg agggctaaag tgtacacgac
3601 gttgaataat attgagaatc caatcattgc ccgaaatcct atctagtacc agtgtcctcg
3661 tgtgaagaac ccacgagact ccaatagttt gactccaagg ggtagtgttg catttggaaa
3721 atctttctga aaagggaaat atattaatca atagccaatt ttttatgggc acacataaac
3781 aaacacaaat gttcacatgg caaattcaac aacttacgtg tctccaacta tgtgggagga
3841 attcatttac cattaatgca ttctgcgcat acatcaaagg ggaacaatag taaccccgta
3901 tccaccaggg tttgatacta tctgcagcat tgaccaaata caaaaaggaa tcagaaagcc
3961 attgttaggg taaaaaaaaa atgtttcctt attatacctc atgacaagac aaaaccaccc
4021 tatgcgaaaa gaataagtat aataaatgac cccattgtgg tggctacggt caagtttcta
4081 caaaatgatg caatcactct gaacattgca gatgacatct gattgagaag catgagggag
4141 aaaaagctgt ctaaagaacc tggcataaga agatttcgtt tattcatgag cattggtcat
4201 tttggaactg agaaaaaaat catgtgaaac aagtctgagc aagttcctgc gacttgataa
4261 ctttttacct tcccgcattt ggatcaagtc cagtgggatt ataagtcatg gctacccaaa
4321 gagcaacttc aacaactgtg atggggatct tgaggatcca tgtgggaaga gcagatggcc
4381 atggaggata gaagagtagg tctctttgct tgtaaaagac accaagtttt tcaatgatca
4441 agacaatttc taccattcca ttaaacatga ttgcgatcac agtgaagaac aaatcactcg
4501 cataaacgtt tccatcttct actgtccttc tgtgcatctg aactcttagg aacagtgtga
4561 gtccgacaaa tgccatgagt aggagctaca aacagaagta aaaatcataa attacattca
4621 aatatatata tacacacaaa attaattcaa agccatagtt agttataaac aggattcgcc
4681 agaaagagct tgaaaagata gataaatgag ttcctcctca tcggcaaggc ctctcttgcg
4741 gtgcaagcac tcatcagttc cttatttgaa acaccataat ttttggttgt caaagcagct
4801 ggatggcttt cggtcttgtc gaatggaatt ggctcttctg ctagttttag cccaacgtat
4861 aatgactgga atgcgtcgcg aattctttgg ctgtaacaaa tctgtaaggt tggtctttac
4921 gtgcccaata ctgctcctat ctttcctaga tgttacctgc aatcaattta tttttcacca
4981 agactaattg taagtcttct tcaaatctaa attaagccca tcttcgagct ttattttttc
5041 tattgaaaat aaggaaaaaa aaacccagaa gctgtaaatt aagcttgatt tgctttcact
5101 tcttgctggt agtctgccac acccttcctt tcaggacatc tgaagcccat ggattagaag
5161 aatccaagca cgttttcacg aggaccctga taaacaatca tgctatcaga cagtagaatg
5221 atctcataaa aaaggtcgta agtctctggg gttgactgta ggagagagat gaaagcagtc
5281 cctttgagaa tattgacgct ctgctataga caattcacga tttgataagt tgtggagctg
5341 tccaaaccag tagagatctc gtccatgaac agaaccgttg ctggtccgac cagcatctca
5401 cctatcattc atacatttca cataattcaa ttcaattcaa ttcaaataat gacaaaaaat
5461 atatagggtt aaccattttc aaaaaccgtt ttttgttcct cgaaattaaa accaggacgg
5521 accagaacat cttttaattg ttttgaattg ttttacatga tcattttaaa ttatcctacc
5581 tgttgtgata cgtttctttt gtccaccaga gatacctctt agcattgcat ttcctaccat
5641 tgtatctgca cagacatgta gtcccagaat ctgtaaatta aaatatcaag aaaaataaac
5701 caatcatgag ttagaatatc agggttttct cagaaatctg tatgcctcgg cttttatcaa
5761 aaactatttt tcgggattgt tttttaaaac agagcaatag tattaatgct ctccactcaa
5821 aataaatagg tcaaatgctg cagaactgct taagatttca ctaaaagtag cttctgtctc
5881 accttcatga acacatcaat atcaggatca ggcttaatat ttgcttcctt ctctcttctt
5941 gccagctctg ctaacatttc tgcagatggc caaaacaata gtgaatttca taagctatgg
6001 aaatgtcata tatacctaca ttcataacct tcaagacaag gaaagtaaaa gccgaggcaa
6061 tgatttagac taaccatatc gaaatccaac accttggcat attgcagaaa aggccaaggt
6121 ttcccttact gtcatttctc ctatatggtt atcatgctgg ccgatatagg cggcagttct
6181 ctggggtacg aattcctcca tgccatgacc attgtatgtc acctttccag taacctaaag
6241 aagaaattaa tttcagtttt rgaattggat atgagattac aaaararawa ttcaataaag
6301 aatggaggag caagtatcca agcatccgac ggtgagatgc tcaaatctaa cttcaactta
6361 cgggaagaac aattccgact ctagaaaaag atggaagcaa cacgaaaacc cataatacaa
6421 aaagtcatag aaagatgttt ggttgtgtag aaaatcatgg tgaactttta agatagcagt
6481 tttcaccaat cgctccaata aattcttatt ttcccgagac ccaaggttct gtatatcaac
6541 ttcactgaag tcgccctctg atcccttcag caaacctttc ttcaacctat tgtaggtagg
6601 aagtttctgg attacggccc atttcaaagc ttcctcatca tcctcatccc ttgctgatcg
6661 ggagaaaacc tccctacccg agctcgtcca gaacctagaa cccgttctcc ttaaacttgc
6721 accagttcta gtaatttctg cagatgccat tgcagaacga agcggagaaa cccccctgca
6781 aaaccaacca gaacccacca aaacccagaa acgtttccta aaagttcagg taaagaaact
6841 caaagtttca aactctggag ctgaaaacgc tcgaaatcag tgatggtctc ctcagctctt
6901 ctggtattga gtttgtcacc cggacacaag caacaactca tccagttcat tgtaggactt
6961 ttgacaagag ttacggttaa tttaaaaaat tattcttaaa ttaccgtaat atgaaaagta
7021 attccaaatc tataacaatt tttgccaaac agaagagagg agtttgtcat acttggaaat
7081 cgtattttca aaagatgatt tccatcaaaa caagtaaaaa aaaaaaaaaa aaaattaatc
7141 tctcaaaaat cgtctttaga cattttcacc aaacaaaaaa attcataaaa tcgtcttttc
7201 aaaagatgat tttttttttt aaaaaaaaaa attatataag tggaaataat cgtctcttga
7261 agagacaatt tccaaaaaaa aataaaatct caaatggaaa tcatctcttg aagagacgat
7321 tttccttaaa ataaataaat tatttaagta gaaatagtct cttcaagaga cgatttccac
7381 ccaaaatttt catatatttt aatatcttta attatcttta ttttataaaa aaataataca
7441 atttaatata aaaatatatt ataaatccat tttaaaatta caaaattaat tatactcgta
7501 caattattat aaatatgtat tataaaatta attaatttaa tttactaaat ttaatataat
7561 ataaataata tttatctatt gttttaaaat aaataatttt ttttgtttta atttttaaat
7621 taattgtatt atataaattt taagattaaa aatattaata tttttaagtt aaaatttcat
7681 gtgttatcat agctcttata atctattata cttcatcaca ccaatttgaa gaccatttgc
7741 taccctctaa tagctagccc ataggtatag gagaatttta cctattgcat gtattgttat
7801 tttcacacat ttaatactcc accaatttga ccgttatact ccacccacac attatactca
7861 tcctaccttt ttccaacctc tcatactcta taaattacct tattcattct cattttcacc
7921 ttcactctca ttttcctcat tttccccact tgaaacttaa tttttcactc atcaattttt
7981 caccttccat cacttccatc tatatccatc gttctctttg gtagacttct gagcatatct
8041 cgtctctttt cttcgacact cacactgttt ataaggtaat atttttgttt tatttttatt
8101 gcaagttatt ttataatgta tggtttttat tattatataa gtttttaaat ttgtttggat
8161 tacgtaatat ttgtttaaat aatatttatt ggaaattatt attttaaata ggttaaatca
8221 ttcaaaaaaa aataaaagat atattatttt attcatagat aatatttttg tctttatttc
8281 atatttattg tgtaatgcat gatagacact attgttacat gttatttttt tttaaaattt
8341 atttgattta tggtaatttt gttagaatat tattttt
//