LOCUS AM473692 10369 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X075739.8, whole genome shotgun sequence.
ACCESSION AM473692
VERSION AM473692.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10369)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10369
/organism="Vitis vinifera"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(2562..2624,3652..4068)
/locus_tag="VITISV_009939"
/product="hypothetical protein"
/db_xref="UniProtKB/TrEMBL:A5BWI5"
/protein_id="CAN83654.1"
/translation="MAPFDSGFDPRQRRHLIRAHLESNLPFLGYFLAKELHEWLNTRR
KWKFRHKNLKKNIPKCRSQISGSTKDHFAGENEVYEISQTSKKGCEITSQQKAGSAPL
RSWLSSCGVWLPSRRETSREIQSTVQKGCKIIPKQRVIPQHFAKSFLQLGAVIFQRL"
CDS 4957..5277
/locus_tag="VITISV_009940"
/product="hypothetical protein"
/note="GO:0046872 GO:0003677 GO:0003676 GO:0008270
GO:0016787 GO:0015074"
/note="partially similar to EMBL:AP008208"
/db_xref="InterPro:IPR013103"
/db_xref="UniProtKB/TrEMBL:A5BWI6"
/inference="similar to DNA sequence:EMBL:AP008208"
/protein_id="CAN83655.1"
/translation="MLIAAKSMSEVNKLKSLLSKEFNMKHLGAAKKILRMETHRDRVS
ERLIWLSQRSYVKRVLDRFNMDNAKLVSLPLASHFRLSTNQCPKTDDEVKDMSKVSYA
SAMG"
CDS complement(6906..8276)
/locus_tag="VITISV_009941"
/product="hypothetical protein"
/note="GO:0016740 GO:0008415"
/note="highly similar to EMBL:AF489108"
/db_xref="GOA:A5BWI7"
/db_xref="InterPro:IPR003480"
/db_xref="InterPro:IPR023213"
/db_xref="UniProtKB/TrEMBL:A5BWI7"
/inference="similar to RNA sequence:EMBL:AF489108"
/experiment="confirmed by EST"
/protein_id="CAN83656.1"
/translation="MASSEMVHVLEHCRIAPPPGSVDGKSLSLTFFDLPWLHFPLMKL
FFFYEFSHPKTYFVETIIPRLKHSLSLTLKHFFPLSGNLIFPLDCSIPEIRYKDGDSV
SLTFVEGSFDFDHLSGNHQRNDIDFHPLAVQMSPASTTFGPLIVPLLAIQVTLFPNSG
ICIGFTFHHIAGDANTFVRFARSWASINKLGGDATLVESLILPFYDRTVVKDPIGLRS
TFWNYFGKVKFEGCQSQLSTNNVRAXFLLRRAEVQRLKKWVIPQIPKQSHVSAFTVIC
AYVWSCMIKARSRSGEDVGENELEHFAFTADCRTLLDPPIPXAYFGNCLMGGLATTKS
TRLIQEDGFIVAAKSIREAIHERVRNKGGVLKGVQQWVSDLKSLNRMRMAAVVGSPRF
QVYNVDFGFGRPKKYEVISRDRYFTLDGCKDNEEDFEIGLCFPKAKMDAFAEIFTNGL
EAYSCL"
BASE COUNT 3449 a 1625 c 2091 g 3134 t
ORIGIN
1 ggaatttcgg tttatggcaa atgagggtta aggatttgtt agtgtagcaa ggcatggtga
61 aggcattatg cggaaaacaa ccagaaggaa tgaatgacat agattgcaag gatttggaac
121 gaaagttgtg acaattgtca agctttgttt gactaatgat gtaatgtacc atgtcatgga
181 tgagaaatca ctggcaacaa tttggttgaa attggaaagt cagtatgtct aactcattga
241 cgaacaagtt gtatcttaag caaaaattgt atagtcttaa gatggcagag ggctcagatc
301 taagccaaca tattaacgtg ttcaattaca ttatcaatga tttgaagcaa gttaatgtga
361 agttcaaaga cgaagataag gcgttgatgt tattgaattc cctacctgct tcttctacgt
421 atgaaaatct agtcacaact ctaatgtggg gaaaagaaac tctcgaattg gaggatatca
481 taagtgttct attaagtttt aatcagagga aaaaagctaa tgatgagagt tcatagggtg
541 aaggtcttgt ggcaaggagt aatcaagagc atgagagaaa caagttttgg agcaaattga
601 gtaacaataa atctcgatat aaatccaaga agagaaagga catacaatgt tataagtgcg
661 aaaaaatggg gcacatgaaa tgagattgtc tcgagaaaaa gaaaggtggt acaaaaaata
721 aaaaagggtt aatcaaagtt tgcaaatgta gaggcagaag aagactcaga gagtggtaat
781 ggtgatatgc tgttggtttc atccagttca gatcatctta catattcttg gattttggat
841 tcagcatgct cttatcatat gacacccaat aaagattggt ttaacacata cagattagta
901 aattttggtt ctgttttgat gggtaacgat gcttcgtgta aagttgctag aatatggaat
961 atcataatta aaatgtttga tggtgttgtt aaaacgttgt gtgatgttag acatgtacct
1021 gatttaagga aatatctgat ttcattaagg aatttagatt gtaatgggtt tagttacaag
1081 tctataagtg gagtaatgaa agtgagtaaa ggtgttatga cagtgatgaa ggggcaaaag
1141 ctagtaggaa atatttataa attgttaggt accacggttg tgtgtaaagt tgcaaccaca
1201 gagtctgaat cagacaatac agttttgtgg catatgtggt taagtcatat aggtgagcat
1261 gggatgatgg agcttcataa gagaaatctg ttgaagggca tcaaaacatg taaacttgat
1321 ttctataagt attgtgtttt tgggaaacag aataaagtgc agttcaagac accgacacac
1381 aagacaaagg ggtttcttga ctatatccat acagatgttt agggactagt aggggtagca
1441 tcattgggag gaaatacata ttttgtgagt tttattgacg attactcaca aaaggtttgg
1501 gtgtacttca tgtagcacaa gtcaagatat gtttgccaag tttaagttgt ggaaagctga
1561 agtagaaaac caaacatgaa ggaagataaa atgcctcaag tcaaacaatg gtactaagta
1621 tacaaattca aagttcacat aattgtgtga gcagcatagg attaagagac acttcacatt
1681 atgcaagaca ccacaacaaa atggtgtagc aaaaatgatg aacagaacaa tagttgaaag
1741 agcttagtgt ctcaaattga atgcaggact tgaaaagaaa ttctaggcag aagtaatgaa
1801 tatggcatgt tacttgatca ataggtcacc tagggcagca ttagatggga aagtagtaga
1861 ggaggtatgg acaggcagtg cgatagacta ctttggtttg agagtgtttg ggtgcccaac
1921 ctatgtacac atatctaatg aagagagatc gaatcttgat gcgaagtcta gacagtgtat
1981 ttttctgggg tatcaaaaaa gggtgaaaga cgtcaagctc taggatccaa aggcaaacaa
2041 ggtggtgatc aatagagatg tggtttttga tgagaaagcc atgttacaat gtacttagaa
2101 agaagagaaa taagagccaa aaaattgcag tagaaatgag caactgatac aagtggaact
2161 agagacccat gatatagaag acaatgcttg gaatggaggg aggtctagtt cagaagatca
2221 gcaacatcac aatatagcca caaacaaaca cagacacact atcaggccac ctactaggaa
2281 tggttttgaa gatttggttt cttatgcact aattactagt aacggggatc ctactacctt
2341 ctaagaggca atacacagcc aagagaaaag tagatggatg ggtgctatga tggagaagat
2401 gcaatctttg cataagaacc agacatggga gttggtgaag cttctagatg ggatgagagc
2461 aataggatgt aaatgggtgt acaagaagaa agaagcagtt tcataaaaag aaggtgaaaa
2521 gttcaaagct cgttgattcg tccctagcag cggcagtggc aatggcacca tttgattcgg
2581 ggttcgatcc ccggcaacgg cgccatttga ttcgtgccca tttggtatct caactgattc
2641 atgtccagct ggtgctcctt gattgagggg agtaatcaac aaaatttata acctattaca
2701 ccatttacta gggtagcaaa gacaaagcta ctatagcata gtggctctag gatcgttcac
2761 tgggatgggt tttcactttg caaatgatat taattcaaag ctgaattggt gtcttttcat
2821 ttcaaggtta gctttaaaag aaaacataaa gatgtttgaa tgaaaaaggt ttggttttaa
2881 actaaccaca aatagtaact gattttactt acaaagaaaa gtgtttcttg gagttcagat
2941 caataggctc aggttcctca tacaaaaatg agagttccgg tcacttgttt cttttcctcg
3001 cattagagaa ttaacatata gttaattctc taaccggtgt tgtacagatg cttcccatta
3061 atgggttcaa acactaaatc cctctcactg atgcaacttg caatggttca tgcctctcac
3121 gagcacttac cattcaagat gatctttaac cttggacttc ccttcaaaag ctcgcaagag
3181 ataactaatg gatgtctcca tggagtccaa aagcttacca agtgtttgct attctawaaa
3241 tcctacttca attcacctcc caaakgctcg caatgttttt tctatttttt ctccarggac
3301 tttttatcac atgccgaacc aagtttttgc ccatgtttwt taaaggcgtt ttaaggraac
3361 gaaaaagara aaaaccatta acgggtcaca ctttctcttc attaaaaact aaaacaacaa
3421 aacttccaaa ttatgcatgt ggaaacttac tcggctttcc tcactccaag agacaaagag
3481 cctagcctct catcttctaa ggaaaaatcc tcagagaatg tctggctagc aagaaaatga
3541 aaatgaaaat gaaggaaaaa cagagcaagg ctctgtatat tctatatatt tatctatcta
3601 tttttktata ttacatatat gattacagtg gatgtaaggg agtttatata ggaaagtaat
3661 ttacccttcc ttggatactt cctagctaag gaattacatg agtggttgaa tacaaggaga
3721 aaatggaaat ttagacacaa aaatctgaag aaaaatatcc caaagtgtcg gtcgcaaata
3781 tcgggaagca ctaaggacca tttcgcaggt gaaaacgagg tctacgagat ttcgcagaca
3841 tccaaaaagg gctgcgaaat tacttcgcaa caaaaggctg gttctgcacc actgcgaagt
3901 tggctttcat cttgtggtgt ttggcttcca tcgcggcgtg aaacttcaag ggaaatccaa
3961 agcactgtgc aaaaaggctg caaaatcatt ccgaaacaaa gggtgattcc gcaacacttt
4021 gctaaatcct tccttcagct tggagcagtc atcttccaaa ggctgtaact tcctcatttc
4081 agctccaaat catacacggt ttgaagcgtt ggattcttga cttcctgagc tttgaaatgg
4141 tatatagcat gtagaaaatg gacttcagga agtgctccaa aagtgcgaaa gaagactgca
4201 gctgctgtcc tttgttttct tcactctgtt tttcctctct ccttgcttct ctccttgcat
4261 actttgaacg actttggcaa agggctatgg agctccaaag cttggttctt catgaatttg
4321 agcttccaaa agctttgcca tgaactatat acagctctca ctcattcttg gattgctttg
4381 gtgatcaaaa agctatcaaa acaccaaaac ttaacacaat ttgattagaa ttgattgcaa
4441 gggtccttaa catgttaatt gggttaaaag gcaataacta ctactcaaaa gtgtttaaaa
4501 gagttaatta caagctatca aatagcactt tttgagtagt aatcactcgt ttagtagcaa
4561 agggttactc acagaggaaa ggggttgact atgatgagat tttttttccc ccatagtcaa
4621 acmcacttcc atcaggacag tattgggttt ggtaacacat tttgatatgc aattggagta
4681 aatggatgta aagasaactt ttctccatgg wgatttggag gwgttggtct atatggtaca
4741 actagaaggg ttcattcaac ttggayagga gcacttggtc tgtaaaatga gaaaatcact
4801 ttatgggttg aagtagtccc caaggcartg atacaagtga tttaactctt acatgatctg
4861 gattggctac acgagatgtg agtatgattg ttgtgtttat gtaaagagcc tagatgatga
4921 ttcatttatt tatttttatt actctatgcg gatgacatgt taattgctgc aaagagtatg
4981 agtgaagtca ataagttgaa gtctttgttg agcaaagagt ttaacatgaa gcatttaggt
5041 gcggccaaga agattcttag gatggagact cayagggata gagtttcaga aagattaata
5101 tggttatctc aacgtagcta tgtcaagaga gtgttggata ggttcaacat ggataatgca
5161 aaactagtaa gtctaccttt ggcgagtcat tttagattgt ctactaatca atgcccaaag
5221 acagatgatg aagtgaaaga catgtcaaag gtttcatatg caagtgcaat gggatgattg
5281 atgtatgcta tggtttgtac aagaccatac ttggcacaaa ttgttagtgt ggtgagcaag
5341 tttctatcaa atccgggaag attgcattgg gatgcagtca agtgggtctt tagatacttg
5401 aggggtacta tagactatgg catcatgttt agcaaacaac agagtaatcc tttagttgag
5461 ggatatgtga atgtagacta agtaggagac ttggatgata gaaggtttag cacaggttat
5521 gtattcactc ttggtgggga gcctatttgt tggaagtcta taatacagtc tctagttgca
5581 ctatctatta stgagtcaaa atatatgrca gtagctgagg ctacaaagga atcattgtgg
5641 ctcayargat tggtcaagga attgggtatt cagcaaggtg gagttcaatt atattgtgac
5701 aatcwgagtg ccttttattt ggcaaagaac taggtgtatc atgtaaggac caacacataa
5761 atgtgaggtt tcacaagatc agaaaattgg tttcttatgg tgaattgtta cttgagaagg
5821 ttcwcacttt tgagaatgta gcagacatgt tgacaaagcc aattgccaca gaaaagttca
5881 agcattgctt gaactcgatt aatgtctcca gatgttaaat aggagatgtc caaacctatt
5941 gtcccgrgtg gagttccaac ctatgttttt tttttcctaa ggagtgaata tttgccaagg
6001 tggagattat tgtagtatgt ggctcatatt gagtaaaaga catatatgga gaagaagggg
6061 caaatgttgg agcgaaacaa cgtcattttc tattcaagtt tgtacttttw ctrttaagaa
6121 ygaacaatag gttagggggg agggggggcs gcccccctcc ctccccacgg tatgattyag
6181 ggatattttt graatttttt aatacctgaa ggttartata aatactcttt yttgtaaccc
6241 taatttttgg tgtagtgaaa gtctttaacc ctrctcccgt ggaygtargc attytrtyga
6301 accacgttaa acctgtgtgt gtkttwtttt wttttwtttt ttttcttatt tcttcattag
6361 gaattgttgc aggaattaca acaaacttcc aaccacaaag tctcaaaatg atggttttgg
6421 tacaaaktcg atagtaaaag tgtcttgatt ttgagcttag aggacttaga atgcacaaag
6481 gaccctaaca agcatgcata atcacttgag aaaggaagat attagagcat ttattcaagc
6541 acatcacacg ttgttaggag aaattamaat attmaaaaaa agtcactagc tccttagata
6601 ggcrtactag ctaggctagm attattctca tatttctcta gtacactcat atgttagagt
6661 aacacattca atgagcccca atgtcaggcc atgttaaaag gcragcgatt tttttgcaac
6721 cataacattg aaaaactaat gttatcttta gtatatcaca acaacgttca ttatttcata
6781 aacaaggaag tgaaatacac tattcataat acatgatcaa akagaaatta gctacaatgt
6841 tgatggtaac aatatcattc actattttca ttttattttt ccttactata tcattatctt
6901 tattattata aacaggaata agcctcgagg ccattggtaa agatctccgc aaaggcatcc
6961 attttagcct tggggaagca caacccaatc tcaaaatctt cctcattatc tttgcaacca
7021 tcaagtgtaa agtatctatc tcgtgatatg acttcatatt tcttaggtct accgaaccca
7081 aaatccacat tataaacctg aaaccttgga gatccgacta ctgcggccat tcgcattcgg
7141 tttaacgatt tcaaatctga gacccattgc tgtacacctt tcagaactcc tcctttgttc
7201 cgaactctct catggatagc ctcccgtatt gacttggctg cgactataaa gccatcttct
7261 tgaattagtc gcgtactctt tgtggtcgct aaaccaccca ttaagcagtt accaaaataa
7321 gctrcaggta taggcgggtc cagaagggtc cgacaatcag ccgtgaaagc aaaatgttct
7381 aattcatttt caccaacatc ctcaccactt cttgatcgag ctttgatcat gcaagaccat
7441 acataagcac atattactgt aaaagctgag acatgtgatt gctttgggat ttgaggaata
7501 acccatttct tgagtcgttg aacttcagct cggcggagta agaatktggc tcggacatta
7561 ttggtagata gctgagattg acacccttca aacttyactt ttccaaaata gttccagaag
7621 gttgagcgga gcccaattgg atccttgacc acagtcctgt catagaacgg aaggattaga
7681 ctctctacca atgttgcatc tccacccagt ttgttaatgg aagcccatga tcttgcaaac
7741 cgaacgaatg tgttcgcatc gcctgctatg tgatgaaatg tgaacccaat acatatacca
7801 gagttcggaa aaagtgtcac ttgaatagct aggagaggga caattaatgg gccaaaggtt
7861 gtggatgctg gtgacatttg gacagcaaga gggtgaaaat caatgtcatt tcgttgatga
7921 tttccactga gatgatcgaa atcaaaacta ccctctacaa aggttaatga aactgagtca
7981 ccatccttat aacgaatttc gggtatgcta caatccaaag gaaatattag attcccagag
8041 agtggaaaaa aatgcttgag agtaagrgaa agcgagtgtt tgaggcgagg aatgatggtc
8101 tccacaaaat aagttttggg atgggaaaat tcataaaaga aaaaaagttt cataagagga
8161 aaatggagcc atggcaagtc aaagaaggtg agtgaaagtg acttcccatc aacactgccc
8221 ggmggaggag cgattcggca atgctcaagc acatgaacca tttcagatga agccatatgt
8281 gatcaaatgc tacttgctat gtttactctc atgttcccaa ccgttttagt ctataaatag
8341 agcattcggt aacgaggtat ctttgaatgg trgttgaaaa atgttgaaaa caattatttt
8401 gaaaaaaaaa aaaccaaaat tattattctt gaaatataag aacttcaaac attttaatga
8461 taggaaccat tcaaaattaa gaaattttta aggtattaat tatttatatt ctttcaaaca
8521 aaaataattt taaaaaaaaa tggtttaatt tctagtgcaa aataagaatt ttttttaacc
8581 atagctgaag ttaattaaga agaattgaga tgatatatgt ttttttagaa tggttgttaa
8641 agggcagaag agaatggtag gtattttttt gagattggtt gttgaaggcc aaatagatga
8701 ttgtaggctg aaaarggcta caaaaaggtt aatgaagttt agtcaccatc cttattacac
8761 attaagttcc aaccacaaag tctaaaattg atattaggtt ccaaccccaa agtctaaaat
8821 aatgatggcc tttattgtca accatggatt cgacccaacc ctagggccat gatcatctat
8881 caatgatata atttgataac ttagggatga aagcctktgt rmmmctaawr aaggggtttt
8941 tttttttttt twgacctttt ttcttycwtk kywwttccta gatttttmtt gatgtttttt
9001 ttttataaaa actttacggc ggaagaacga ttcggctatc ctaaagcact tttatagata
9061 aaaatggtga tycacatggg aaatgaaaag ataaaaaagg gaaatggttt actctcatgt
9121 taacaactgt ttttgataaa aaataaacat taaaagtatt tcataaatat atctcattaa
9181 atggtggttg aaaaatgttg aaaacaatta ttttgaaaga aaaaaaaata ctaaaattat
9241 tattcttgaa atataagaac ttcaaacatt ttaatgatag aaaccattca atattaagaa
9301 atttataaag gtattaatta tttttattct ttcaaacaaa aataattttt ttttaaaatg
9361 ttttaatttt tagtgcaaaa taagcttctt cttttttttt catttcattc ttattactta
9421 aatcgattta cttaacaata gctgaagtta attaaaaaga attgagatga tatatatttt
9481 tttagaatgg ttgttgaagg gcaaagagaa tggtaggtat tttttttgag attggttgtt
9541 gaaggccaaa tagaattgta ggttggaagg tgcctacaaa aaggtgaagg ttatccactt
9601 atccttatcc attacacatt gagttccaac tacaaagtct aaaattggtg gcctttattg
9661 tcaaccatgg attagaccgt accctattgc catgtcatct atccatcata taatttgaga
9721 acttagggat gaaagcctgt gtgcccctaa tgaaaaaagt ttgattatcc ttatgtaaat
9781 tgacagttga agaagcaact ttagatttaa ggaattaacc ttgggcccca taattcaaag
9841 ctttgaattt gtgaagcaac tcaattgtag tcttctgtgt tggttcaata attatgttaa
9901 atagcaaaag ttaaaagcaa ttaacaagca acaaacaatt tgtttagtgg agtaaggatt
9961 tggttcaaac aaatttccaa gtaaagtgca tcgagcaatt tccttgaaag caaaagtaat
10021 atgtacatgt caacttccat tttgtcattt ttttggtctc aaaaccacaa taagtaatta
10081 tgattttaac tttaagataa aaccacattc atcaactatg atgttggtaa ctttaatttt
10141 aacttaaagt taatactaca actagtaatt atggtttaat gatataaaaa aaattttaaa
10201 tataataaaa tgaaaattaa tgtaattgaa atattacatc aatgaatatt ttgaaaaata
10261 acttaaatat aagatttatt ttttttttta aatgattatt tttcccccaa actccatgta
10321 tatttctatc atgtattact ctgacccatg aaggcaggct atggtagaa
//