LOCUS AM473234 10974 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X078648.6, whole genome shotgun sequence.
ACCESSION AM473234
VERSION AM473234.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10974)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10974
/organism="Vitis vinifera"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS 635..748
/locus_tag="VITISV_015488"
/product="hypothetical protein"
/db_xref="UniProtKB/TrEMBL:A5BW18"
/protein_id="CAN81543.1"
/translation="MLLVKKMVKRLHCRQHYSTKEKETMVSCLLISLISSG"
CDS complement(join(6343..6408,6545..6672,7048..7462))
/locus_tag="VITISV_015489"
/product="hypothetical protein"
/note="GO:0004674 GO:0004672 GO:0005524 GO:0000166
GO:0006468"
/note="partially similar to EMBL:AP008217"
/db_xref="GOA:A5BW19"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR003527"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR017441"
/db_xref="UniProtKB/TrEMBL:A5BW19"
/inference="similar to DNA sequence:EMBL:AP008217"
/experiment="confirmed by EST"
/protein_id="CAN81544.1"
/translation="MDFFSEYGDANRYKIQEVVGKGSYGVVCSAVDTLTGEKVAIKKI
HDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLH
QVIKANDDLTREHYQFFLYQLHTGIEVHSHRYEPRISNVYHRDLKPKNILANANCKLK
ICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKV"
BASE COUNT 4113 a 2009 c 1595 g 3238 t
ORIGIN
1 gttttaagac aagatgtgat cacaggtcyc actawactag gtaagctctc ctyaacttgg
61 tttcaattat cytcctacay yttcatattt taaatttcag tgaacaaaaa gaaagaaaga
121 aaaaaagaaa gcatagatga atgtattcaa tttccatcac aagcgaaaca tcctcaattc
181 ycaaccatgg cttggttacc aaatgttaga aacttcaaga tgtttaacac catccaagaa
241 tttgaaatct gaataaagga ctgcatacct taactcgtaa aagatgaata tgattaatgc
301 cattagaata tatgattgtg aacccaaaaa aatgcattta ttaatccatg aatcaataaa
361 tatagtatca attacatgca tgaagaaacc aaagctgtgg ttttaccaaa gataaaaact
421 taatatggtc cctaataaac cgtctgaatg ccattcaaca acatccacat ccacaaaata
481 agagaagtgg ctatcatctc acctagatga aatcaagcca atacccatgg cctatcaagc
541 aatgggaatc aagaacatac attgtaggca aactgaaaac ttacagtcca taatcaccct
601 gaagagagca atgaaagaaa atcaatcaaa tggaatgctt cttgtaaaga agatggttaa
661 acgtttacat tgtaggcaac actatagtac caaagaaaaa gaaactatgg tttcttgctt
721 gcttatttct ctaatttctt caggctaaaa gtgagcaccc cacacccaca cacacaatga
781 aattttcttt tatgaaatgg aatgtataat ttcactacta tgtagtttct catgaacaca
841 attaattagt gtctaacaca acttgagaaa gaccccctcg cccccttccc ctccctccct
901 ccctcatctt gttcttttta cacaattcct agacaactct cctctaagtg gttcccatcc
961 catccccaac tgtaaagagc tctaccacac ttggggtttc tccatttacc caatattatc
1021 ggcaactcca ctaacctttt ctccccaccc cccatctaat acattcttga cataccaaac
1081 tgaactgtcc caacttttct gtgagcagcc gctgttgcag ccgctgcagc agcagcacca
1141 atcccaccga actgagcttt ggcttgcagc aagtttgcat caatagtaat tcggtcatca
1201 acatggtcca ccttggtcac tcccgccctt gtcatataga atggattggt gtcaatattg
1261 atggctatgt ctggggctaa cttggctgtc atgccacatt gagggacttg ttttgcttgt
1321 gatgataagt ccctctctgc ttctcccaca catctttctt gctttcctgc actagttctg
1381 cgataacaat acgcaggagg aagagcctgg gaaggaagga ctgcatttct gattaatgtc
1441 ctgtgatcat atgcatcttt aatggcactt ccattctcgg gtggtgccaa tggccccaca
1501 acctttcctg gtttggctga acagcaaaac aaatttagct ttaactttat gaatatatga
1561 aacaaataaa acacccatta gaatgaataa agtgatcctt tttttaggaa aagaaagttc
1621 tgaaggaaca atcagcattg agagggtacc cattgggatc cgttgggatg cctgcaagct
1681 ccttgacaga tttccaggaa ttccatctgt gtctctagaa ctcctactgc atgactcttc
1741 tgcaatttga cgatccttga aggctatgat atgtggttct tttgcaggga ttgtatttga
1801 atgtacaaca gtagacctga atttattaac agtttggttt gtcatyacga tcactatgaa
1861 tagcaataaa cattcaattg tgttgaaaca aaaatggtgg tataaagata tgtcaatgtt
1921 aaccatacca acaatgatgt gttcatgtca actgtatctc aaaaatstag ataactgttt
1981 ttgaaaattt gcaagaatat ctctaggata tcatagattt ggaatcacca aaaaatgtag
2041 agaacacttt tttttatcgt ttagtgtttg tcctactttt atttaaatcc agactaaagt
2101 tctcagacaa ttgatcatct gatactacaa gataccaaaa aataccaaca tacaaatgta
2161 tatctcagcc aactgcacat ttacaaagtt agtgctaatg ggactttttc acagttcttc
2221 ccaactaatc caatggtgag actgaaaata gattgattaa tatattttac ctgggaagtg
2281 acacatgctt tctctcaagt ggaattactg gcccagtttt accactgttt tcctctagat
2341 gtgcaaattg ctttctgaat tgatcaacag cactgagtac aaaccatgca caaaaaagga
2401 aaaagaatca gggaaagtgg agaataataa agatctaata actcattctc taaaagccag
2461 aaatgttgga actcaaaaac taaataaatg aataaacaaa atgaatgaga ggaggtcagc
2521 accttggata gagaaaatta gtcctttcag ttccattcac gtagtctttg agtagttgag
2581 gatggtattc tagtatctcc cggaaaatta gctcccgtat gtcctccttt gtaacccttc
2641 tcctctcaaa ctcaaattcc atctttgtaa ttggttggca agaaggttcc ctctcaacct
2701 ttgccagacc cttaaagtag ggatcagcca atgcctgaga aaataccatt tttaaaaaaa
2761 tcagcacatt atcatatttg aagcaaagaa atcaagttat gaattttgaa ggaaggtaga
2821 gccaaaggtc atatcaaggt tcacatgcat atrgcccaca acttggtaga actgaagtag
2881 aggatctagt gggctaacac taagacaaac ctcttcagca gttggccgat cctttggatc
2941 aaargcaaga agcctttcca atagccgtag tgccaaagga tcagcatttg gaaacttctg
3001 tgcaaatatt acaggctgct tcttcctcat gctagtaagg tatcgccttg ccttctcatt
3061 wcgaacctgg atccaagaaa gaagaaagtg atattggtga gaaaaattca aaactgtgta
3121 aatagaatcc aacactaaag gagtacattt tgtttacccg agaaatggta tctaaagatg
3181 gtgtcccaag cagatcagtc atcaaatcca gctggtgcac aacatttttt ccaggaaata
3241 atggcttccc tgttaatacc tcagcaaaaa tgcagcctat actccatata tcaatcgcag
3301 gtgtatactg catccagaag gaatcataaa tcaaaataaa ttagaattag aggattagat
3361 tgcactaatg aatattagac ccaatacatc taccagaacc acaaatatta caaaatrgtt
3421 acaaatattt gaagrcacgg caatgcatcc acaataggtt accataccta gaaaactgtt
3481 gataaattat ctataagaat tctaatttat ataaatatac atgatatctt gcatgtcaca
3541 tagtatccca atattaacct caaaatatta ttttaccact atcttatggc aatccatatt
3601 aatttgggga caaaaacaag taaatactat ttaaaacatc tactcaaaat acatggtcaa
3661 ctaagaatga ggtctcatct aaactcctgc agggttgcac ctcctatatt aggtatgcaa
3721 ttagcttcct tctggttgta tctagtaatc cactttgcct gatcatcaag catactagat
3781 gtttctaatc cacctcatca aattccgata cctttccaag cacaagccct ttttcattta
3841 tgaaatgaca acaaaaaagg ccatcctcaa tcagacacca aacagaacct ccaaggtttg
3901 cattcctagt tcccatgtac tttcccccca actgcaatga gcctcaatca tagagctgat
3961 ccatgcagct taaacaacga gaaaataaca ctaccaatgt aatccctcyg atcactctgg
4021 acacagctgc tgaacttcct aaacaagctt ccattaaact ctattttcat cttgtcatat
4081 tttttgccaa caaataactg aaaatcaaaa ttgtcaacat aaatcatcta cattataaaa
4141 caaaatgaca ctcagcatca tcatcaaaca aattaagaaa ttaaaagtca ccacaaaacc
4201 aaatcaaaac aagaaaataa aagggaacaa attcaagaat atatcagtta aacccaaaaa
4261 aaaaaaaata gaacatataa atagcaaaat tatgtcattt gacataaaaa taaataaata
4321 aataaataaa aataaaaata aaaaaataag tagaaatgga caataatcag caaagtcaca
4381 tgaatcattg gaattaggat gaagatattt gaagaagatg gagttcttta agggtcaatg
4441 aagagataag tcatgacttc aggatttcat attagaaact tggtagataa tatcacaagg
4501 ttaattagtt attgcttgac atggcaattc ttacaaacaa attttcttaa tatcccatgc
4561 aacttttagc aactaggctc ctcgtatgaa ataaaatctg ttttagtctt tttaaaataa
4621 aaaagtgaaa agttaaatca catttttcca aatattttca tcttgttaca atttatctta
4681 attttcctac aatgtttgtt gtactaatca aaattttatt ggtcttataa gcttgataat
4741 cttgtcaaac aaaaagagta ttaaatgaat actagaatag aaatagtggg ggagaaaata
4801 aggaaatcag tttttaatga gttaaaattg tatgattttg catatacttt ctaaaaaaaa
4861 attaagtatt ttatgttgta caaagaatgt atcaaaattt aatgattaat catcatcaaa
4921 tcaagatgcc ttttatacca ttgacccaca aaatggtcag tgttaggatt ttggtccaaa
4981 aatatattca ccaaatacca ataaaaaaca gggttcatgt taatgaaagc tgagtcaata
5041 cacaaccaaa tctcattaag aaaagattca aaaatcgtcc tggaattcca tgttgaaaac
5101 ttccatgcat aagcttttca agcaatctta ggtatggtga cttagagaca ttaaaatttt
5161 aggtggacta gatttcttca catacatttt ttctcaaact agcaaatatc tctaatagaa
5221 tacagtacaa taagaacatc caaattgtgg actctagaat ctccaaattc atgtatggat
5281 caagagaagc ttctaaatgg attaaagtac atgaaattag ttccaaacta gaactactca
5341 ttgattcaga ttgtctcaat tcaaggattc atggttgtga aattaagttt tyagaagaca
5401 acagttgagg tccatggatt caaattgggt aagcaggatg accacattca actatttgat
5461 ttggacaagg tcatttgatc attccaaaaa gggtattcta catgaaaaat atttgtcact
5521 tattttgatt aatgttaagg attagactga acaaaccggc cctaaaaata ttttgtatta
5581 tcatattaat cctaaattgg ttaatcttag attattaata ttggtagaat tggctaagca
5641 gtggtcggta taaaaaaaaa aaaagcaagt ttgaattaga cctattcctc cccatcctac
5701 taggtcatag gaatcccaac taccagcaat ctttcaggcc caacatatca tatggggaca
5761 gagagatcta tgttccttac tggaccctga gtatcgtcta aatctattaa catgatgttt
5821 tgatccttaa aaatcagaca aacatgcttc ctatgatgtg ttctgcattt aacaataaca
5881 tcaaagcctc taagtctaca aaaaccaata gaccaaatta tgacatcaag aaaaaataca
5941 gttttccata tacattccca ctccaaacct tccatttgat gacaaaagtt tctgcaagcg
6001 gagcaaagca aaattacaaa aaattccaca tggctctacg cgtggttacc taaatctaag
6061 gatgcaagtg agagtattta catttcattc ataagtcata agctttgatt aagatcattc
6121 tcttccaaga acaaggaatt ataataattt gagtaaatgg tctggtaaaa catggcaaag
6181 gttccaaacc catgaatgga tgcaatatgc atctagaagc tacacttgtc caatataagc
6241 acacagatgc aataaatgaa attcagatct aagaaataat ggaccatggc atattgatgt
6301 tataattgaa tttaaaagat ctttaaagta aaacacgcca tattatacct tggagaaaaa
6361 tgatccacat aactctggag ctctatacca tcttgtagca acataatcct gtaaatggct
6421 cataagaata gcaaaaggca tcagcttcac atatcctaca ttagtatcat tacaggaaaa
6481 gaaaattgag ccctttaaat gatagtaaaa aacatcacat atccagagtt ttagaattac
6541 ataccgtcca aaatattgtt gtaggtgtat cactgaatgc aactcttgct aacccaaaat
6601 cacatatttt gagtttacaa tttgcatttg ccaatatatt ctttggtttt aaatcccggt
6661 gatagacatt tgctgcagcc aagtagttta atatcagaaa tgtttgtcaa ttaaccttat
6721 cacaacctgt agcccaaaaa cacccttcca aagaaaacca accccctaaa tcatatccac
6781 cccagaaaaa agggaagaaa aaaaataaca agaagtcaac aacagaatag cagccagaaa
6841 ttcagggtac aaatatatca aaagagaaat gtgtttataa attttaggat aaaaaggaat
6901 cagatggctg taaacagatt gttgccaact caaatatagt tggaaagtac agaaatatca
6961 tgaagatctt ttttagcaat aagcaaatat cagtcaaatg catatcactt tatattattw
7021 caacccaggc aacacaacca aacgaacaga tgcgtggctc atacctgtgt gaatgtactt
7081 caatgcccgt atgcaattgg taaagaaaaa attgatagtg ctctctcgtc aaatcatcat
7141 tagctttgat gacttggtgt agatccgact ccataagttc aaaaacgacg taaatatctt
7201 taaagtctct tcttgaaggt ggtagcataa tgtgtttaat ttcaacaata tcgggatgcc
7261 gtagaagcct gagcagcttt atctcacgga gaattcgagc agcatcagag atatgttcaa
7321 agatatcatg tattttcttt attgccactt tttcaccagt aagagtatca actgctgaac
7381 aaacaacacc ataacttcct tttccaacaa cttcctgaat cttgtatcta ttggcatcac
7441 catactcaga gaagaagtcc atctctgcag aattctgtgg gaaagaaaaa tcatcaaatt
7501 atattacaag atgatacacc aacaacagtt atgggctatg gcaagtagct catacccaga
7561 agaaaaaaaa aatcataaat gcaaaataat aataaaacta ttaattcatt tatcattatt
7621 acaaatttat attaaacatt ctcatccata ttgctagctg tttctcctca gtcctcaaat
7681 agagtctcta acttttcata tgcaccaaag gaatagcact tttttcttaa taggatatgc
7741 tccaaagaaa gagcactata tggtaaaaga gaaacaaaga tatacttaca aatatttaaa
7801 aataaaaatt taaaagaata atcattaact tgaattcaaa tatcaattgt tcattcatat
7861 gggaagctct tccaccagga agagattttc attaatatac aagtgctccc aaagactgac
7921 tgcttcatgt taagaaaatg catgaaaata attttcagac cacatataca actaacaaaa
7981 atataaacat caaatgggga aggccacatg cacaagttaa agaaaaaaat gaaacaaaag
8041 aattcaaata ctactttatt atggcctcaa ccaaaataga aagataccgt gtacctaaag
8101 caactaaata tatccaatac acattgcacc aagtctgaat ttggatctgc caccttgaaa
8161 ccaaatcatt tcacctacaa tacttctacc atagcaaaac ccaacaacct tttctcagct
8221 taaagaacac ggcatatgtg ggattaggat aaaaatgaaa ataaaaagtt ggattccttt
8281 tcacttttcc tcttttcccc aggttagatc atcgagtaga gaatgggttg agacaatatt
8341 ctacttctgc accagtaatg gaaaatgacc cagattataa ttgttctcga aaagagctgc
8401 aattcatgaa atagcagcaa gcacttaaaa ttccctagtt ataaccaata tttcaaaccc
8461 tagaattgag atcaattcat gcccacatct aaataaaagc caaaaatgag aggattttcg
8521 acaaatggat ggagaaacgg atgccagaaa attccaccca aaaccaagaa aaatgacaaa
8581 gaagaacaaa caaggaaacc cagaagaaaa aatatcatgt tagggaacag aatcaggttc
8641 ttgtgggaaa aatagaacaa aaaatgacat ctaagaagag ccagcaagca ttcatttcat
8701 ggcacagcgt ttcaagaatc ggaaccaaac ccactttctt taacgacaga acccacaatc
8761 aaaacccaaa aggagaaaaa caaaaccaac acaatccaga aatcacatgg aaccaccaga
8821 agcattgaag cctcagaccc caaaatggaa aagaaaaaaa gaggcacctt ttttggctga
8881 tctgagagca taattaagaa atgtagcagc aagaagtggg ggagctgaaa gagaattgtg
8941 ggaagtgaaa agagtgatga gagcaaagaa aaatcagcca catttgcccc acctacccct
9001 gcttctgatc acaagcccac aatcccacct cgttcttctc ttgtaatcct tcacgaaaaa
9061 gcattgaaat aaaccacttc ccagatccct catacacacc aaaccctttg aacaaacact
9121 ccttatcata gagatctcaa gccctcatgc taaaaaataa aaagtagaaa acacacacca
9181 ttcaccacca atcctcccaa gatctacacc ctaacccaac accgacacta gagagagaaa
9241 gtggagattt tggcatgaat atagggcaat ataggtgggt gtggggggat tttctttttt
9301 tcttttcttt tcttttctta tttctttttt tggtttttta ttgctgttgt ttcttatcca
9361 aaccgtattt tcacacggat atggttagat acggtagcgg ctgtttcgta atttacggga
9421 gttttcgagg gctttaagat aggtgcgttc ggctgatgga ctcagaatat accttgccgc
9481 tcttatattc ctttccagtc cactcctact ttatttttaa atttattctt tttctatttt
9541 atgtcataat tacttaattc atgtctctta ttaatagagt tcaaaaaagg aattgtattt
9601 ttcaaaaaaa taaaaaataa aattacttaa tgatttattt caaaaacatc aagatctctt
9661 tgataactat ttttttaaat taattttttg ttttaaaaaa taaacatttc gacaacaaaa
9721 aataaaaaac tattttgaac ttaaaaatag aaaataatat atttttagat aacaattttt
9781 atgacgtatt tattaacttt aaaaacagta ttttattctc caaaacaaaa agcaagaaaa
9841 cgtatttaac aatcaaaaat tgttttctat tttttgtttt ttaaagaata tatatatttt
9901 catataacat tttttagtta tttttactta ttttttaatg actaatttaa aacataaggt
9961 taaaaacatt ttaaatcttc aaatagattt tttgttttac aaaatattaa aaaatatttt
10021 taaaagttat cttccaaaac tgtttacata ctctaatggt tattttcact ttttttagca
10081 ctattttgaa aaataatttt aaaattaaaa aataattaaa aataaagtat cacttataaa
10141 aattattttt aaaacataaa aaataaatta aaaatatttc agactctaaa aatatattta
10201 ttttataaaa tattaaaaaa taattttaaa aaactatttt aaaaaacaat taccaacaaa
10261 cctaaatttt attccttaaa aattaaaaag tggcccttaa caaaaattat aaaaaaaaaa
10321 aaattgcata ataattatta tgttcttaag aaatgaaatt ttatttttta ttcttgaaaa
10381 atgagaaaaa aaaaatttgt ggttttttta acaataaaaa ttggaaatta agtaaatgaa
10441 acccaacatc taaaactaaa awtttttatg atttaaagtt gtaaaactaa ataaaaattg
10501 aaaataataa taataagtgg agtcatatca aaagaaaaat ggaattagtg ggtgtttccc
10561 aagggaggta caagtatatt gagaagatac gagaaatgtt caaagacaag gccttcgccc
10621 actcgttgcg tggattctcc aataaaaaat awaaaaaaaa atcaacacct tatactcaat
10681 aaataaataa taatcatatc atcaaggact ttttaatttc taatttttgt tttcgccatc
10741 cttattagag atttccccaa aaaaaattcc caaattgctt agagttccat attggtccta
10801 ttcaatatga tataatattt taataaatat ttcaaaagta attgcaggat ttatcgggaa
10861 gacaatatat ataacataaa ttaattaaaa tttaaactaa attttttaat ttagtaaatt
10921 agcaaaattt taaaaattta aagtttaact taaaataaac ttagtagaca ccga
//