LOCUS AM467316 5679 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X045648.6, whole genome shotgun sequence.
ACCESSION AM467316
VERSION AM467316.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 5679)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..5679
/organism="Vitis vinifera"
/chromosome="1"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(3751..3849,4108..4836))
/locus_tag="VITISV_006703"
/product="hypothetical protein"
/note="GO:0015074 GO:0006278"
/note="weakly similar to EMBL:AP008214"
/db_xref="InterPro:IPR005162"
/db_xref="UniProtKB/TrEMBL:A5BQ86"
/inference="similar to DNA sequence:EMBL:AP008214"
/protein_id="CAN68195.1"
/translation="MLSTPFSSRIIKYEPPRGFIVPKFSTYDGSRDPFDHIMHYRQLM
TLDIGNDRLLCKVFPASLQGQALSWFHRLPANSIDNFRDLSEVFVGQYLCSARHKQNI
NTLQNFKMQENETLREFVKRFEQAVLQVESYSMDAILQIFKRSICPRTPFFESLAKNP
PTIMDDLFRRASKYSMLEDDVRAATQQVLVAGQATRSFKTPNHPGLSNRGQDERRPPL
NRTPLTKSYEKLLPIICNLPGFRWPYSSKRKRQRLLRAATVREHVNSIQPKIPREQQ"
BASE COUNT 1216 a 1289 c 1513 g 1656 t
ORIGIN
1 tgggacttga gtagagcctg aactttcatc tcgtcggaca tggtgagcgt gcaccagggt
61 ttcattaggc catgcctcat gtggcccgag ggttgggctc gcatctcggg ggaatggagc
121 ttcctggttg tgacaaggat cctgcctccg ctgatagtgc tgatgttggg aagagccttg
181 gatcttcaag acattgtttt cttccctgag ttttcttgtt tcttggagca aaatttgcat
241 atgccgttcg ttttctcgct gtcgtctttc catggtgttc cgccacttga agtaaccttc
301 gccacttctg gcggaagaac gactccttga gggtgragtc atctttatag ttggaakgta
361 taggatttac cgagaagaaa gggtgttccc acagacgacg ccaatgttga tggcaaaatt
421 cccctgctac agtagtcgtc accagcaacg gaatctygat caacgcgtta cagtgaatcc
481 tccttcctcc tgcaaaaaga tgtctgacag atcggacaca ccctccgwtg gttttgttag
541 tcatgggtca agagattaag ctatcaggct tttttaggga tagttagcct acctccctcc
601 ttgtgtgaag acccttttat atagtgtcag aaagtatgac ctcgttgtgc tagcgggtcc
661 catcgtcatg attgcggctc ataaggtggc aaagcaatca tgacattttt ggtgctaggt
721 ggcggctgcc acttcaatta tgacatttct ggcgccaggt ggcggctgtc actttagtta
781 tgacattaaa tatcggggat atgtcaggca ctttgataag atttaagaat atcttgcctc
841 tttaaatatc gggaatgtgt caggcacttt gataagattt gggaatatcc tgtcgagctt
901 atcttgcact gaagatgagt gacagttcag gagacttggt tgtcaatatt atctgagttt
961 gctttttgat tgtgggtgga aatggatccg gcgaatcgcg agtgtctgat gaactaagtt
1021 gtccggggaa tctgaaatgg taactgcgga tgttctccgg gtatgcgcta tcaaagtatc
1081 gggacatgcc tgaccgggga agttgaattg cccttctctc tcatccggtg gcaggcgcta
1141 gctatgaaat atccggagaa ggtggaacgt tggccggatc cagatgtgag atatccagat
1201 gaggtgggat gtcggccgga cagaatgacg attgtgagac atccagataa gatagagcgt
1261 cggccgaatg caattcttct ccgggtggaa tgagctatat cgcgtgtctt aagggggatc
1321 gtctgtgtgt gcaagggaga gagagacacg tggcattttt tagggaggat cccacaatgc
1381 ccccttttta tatcgcatgt ctggcccggt cagaaaaggc gagataaaaa tgttaccttt
1441 acaaaatttc tctttcattg gtaatattgc tttagattgt ctacgttcca agggcgaagt
1501 agaggggttc tatttaaggt ttgcaaatgg tacgacccat tttcgttggc ttttgatacc
1561 acataaggac cttaccaatt ggcctgaaat ttttcggctc atttctttgc cgtgtcttca
1621 aagatttttc taagcaccaa tgacccttcc ttgaaaatcc gaggtcgcac cctcctgtta
1681 taatacgcag ccaccttttg ttgatatgcg gccatccgga tggatgctgc ctctctagcc
1741 ttatctgccc aatccaagtg ctttgcaagc tcttcgtctt catttctttt accttggacg
1801 acagtccggg ctgtgggcat acccacttca gttgggatga cgacatctgt ttcgaatgtg
1861 agggcgaacg gggtatccct tgttggcctt ccgggtgtgg ttcggtaggc tcataggacg
1921 ctgggtagct cttctaccca ctttcctttg gctttttcca accgtttctt caacgcactt
1981 agtaaggttt tattggttgc ttccgcttaa ccgttgctct aagggtactg cggtgtggaa
2041 tacaggtttt tgatgtgaag ttccgcgcaa aaacctttaa aggcagagct atcaaactga
2101 gggccgttgt cggctatgat cgcctgaggg attccaaatc gacacactat atttttccag
2161 acgaaccttt tgacgtcctt atccttgatg cttgcgtagg cttcaacttc tacccacttg
2221 ctgaaataat tgggagcaac gaacaaaaac ttcctctgag cggctacagt gggtaagggt
2281 cccaagatat ccatccccca ttacgcgaaa ggctaagggc ttgtcactga gtttaatgtc
2341 tcagcgggca tatgcgggat tggcacgtgt ttttggcatt tatcgcattt ccttacatag
2401 atctctacgt cctgcctcat ggtgggccaa taataccctt gtgaatgcgc ccggtgcgct
2461 agggttctgc cccctgaagt ggttgccgca aacaccttca tgaagttcgg atagaacata
2521 ttggatttcc agctggatca agcatctgag gtacggacct ccgaaagaac gcctataaag
2581 atcatccccg attagggtaa agcgggatgc ttgtatccgg attttgtggg cgtgcttggg
2641 atctgcaggc agtgcccccg tttgtaaata ggccctgatg tcaaccgccc agtcgtattt
2701 ctttgggctc acattgcaaa cgtgtgattc agcgatggtg ggagtggctt gaacatatac
2761 tggtagcatt gttgactctt tcacgggaaa tgatgcggtt attcctgcca aagcgtcaac
2821 ctgcacattt tctccccttg aaattttctc aatgagccac tctcccaact ggctgagtga
2881 ttcttgtact ttcaataagt atttggccat gcgctcgtcc ttggccttgt actcttttag
2941 tattkgcccc acgacgagct gggagtcatt gtggattttg acttttgagg cgttcagggt
3001 ggttgcaagg cccaatccgg ataggatgac ttcatattca gcttcattgt ttgaggcggg
3061 aaaatctaga cggatggatt gctccaaccg ttcgccgatt ggtgttttga agaggagtcc
3121 gactcctgat ccgaacgagc ggaaggccca tcaacatgca gagaccacca atcatccgaa
3181 gtcgattctt tgtccggggt ttgccaccca gggatggacc ggagtgggcc ggacaacgca
3241 gagtcttaag gggccatttg tttattgggc cattggaggg tgatgtcccc aggattcgaa
3301 ctcatggtgg agacaaggct cttacccctt attgttgccc tcatggtacc atctgagctt
3361 ttatgttggg atgtcatttg tgtttatttt ttgttctggc aagccgtacc accgggattg
3421 gaccggaatg ggccaggacc agagtggcct ccctaggatt cgaactcatg gtggcggcaa
3481 ggctcttact ccttattgtt gccctcttgg tatttttggc tctggccagc cgtaccaccg
3541 aactgtgcca gacgggggca tcacagccgg aatgggcctg gaccagagtg gcctccccag
3601 tgttgggacg tcatttgttt ttatccagga ttggaccaga gtattttttg gctctggcta
3661 gccgtaccat cgggattgga ccggaatggt ccaggactag aatggcttcc ccaggattcg
3721 aactcatggt ggcaacaagg ctcttacccc ttattgttgc tctcttggta tttttggctg
3781 aatggagttt acgtgctccc gaaccgtggc tgctcgcagc agtctctgcc ttttcctttt
3841 ggagctgtac tcgtcatcca agggtcctcc gtttatgtag ttgattactg ccctaacagg
3901 agccgctggg gcgcgtgggc ctcgaccatg ggaagatcct tcacctttag gcactgttcg
3961 gacgtattac ttcaagtgtc ccgcctttag gagatcctcc accatgtaat ggaggcttat
4021 gcacgtttta gttgtgtgtc tatgatcttt atggtaatca catcttttat tgcggttcct
4081 tttttagggg ttcgatctta ttggtactgg ccatctgaag ccaggcagat tgcagattat
4141 aggaagcagt ttttcgtacg acttggtgag aggtgttcga ttgagtggcg ggcgccgctc
4201 atcttgcccc ctgttggaca acccaggatg gttgggtgtt ttgaagcttc tggtggcttg
4261 gccagctacc aggacctgtt gtgtagcagc tcggacgtca tcctctagca tggagtattt
4321 acttgcacgc cggaataaat cgtccatgat tgtaggaggg tttttggcga gagactcgaa
4381 gaagggggtc cttgggcata tgctccgctt aaaaatttgg aggattgcat ccatgctgta
4441 cgattctact tgtaggacag cttgttcgaa gcgcttcacg aactctctta gagtttcatt
4501 ttcttgcatt ttgaagttct gcaaggtgtt gatattttgc ttatgcctgg ctgagcatag
4561 gtattgcccc acgaagacct cagacagatc tcggaaattg tcaatcgagt tcgcgggcag
4621 tcggtgaaac cacgaaagag cctgaccttg taggctggct gggaaaacct tgcataacag
4681 cctatcattc cctatgtcaa gggtcatgag ctgccgataa tgcattatgt gatcaaaggg
4741 atctctagat ccatcatatg tggagaactt cgggacgatg aaccctcgtg ggggttcata
4801 tttaatgata cgagaactga aaggcgtgga gagcatgtcg tccaggcgtc tgctgataga
4861 gcccggaggg gctgtgtgcg agggatcttt acctacccac gccaagggtg ggcgggcggc
4921 atgtccctgt aaagtaggtg agctcgaggg ctcggagtgt gcatccagtg atatgggggc
4981 atgaggcttg tttttgtagg atgtttgggg tcccagacgc gcacgcatgg cttcagatat
5041 ttggggtctt ttctcacgtt gtcgcttgga tgggacttga gtagagcctg aactttcatc
5101 tcgtcggaca tggtgagcgt gcaccagggt ttcattaggc catgcctcat gtggcccgag
5161 ggttgggctc gcatctcggg ggaatggagc ttcctggttg tgacaaggat cctgcctccg
5221 ctgatagtgc tgatgttggg aagagccttg gatcttcaag acattgtttt cttccctgag
5281 ttttcttgtt tcttggagca aaatttgcat atgccgttcg ttttctcgct gtcgtctttc
5341 catggtgttc cgccacttga agtaaccttc gccacttctg gcggaagaac gactccttga
5401 gggtgaagtc atctttatag ttggaaggta taggatttac cgagaagaaa gggtgttccc
5461 acagacgacg ccaatgttga tggcaaaatt cccctgctac agtagtcgtc accagcaacg
5521 gaatctcgat caacgcgtta cagtgaatcc tccttcctcc tgcaaaaaga tgtctggaca
5581 ggatgtccgg acacaccctc cgttggtttt gttagccatg gctcaagaga ttaagctatc
5641 aggctttttc agtgatagtt agcctacctc cctccttgt
//