LOCUS AM466557 6836 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X119019.7, whole genome shotgun sequence.
ACCESSION AM466557
VERSION AM466557.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 6836)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..6836
/organism="Vitis vinifera"
/chromosome="5"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(<1568..>2001)
/locus_tag="VITISV_020177"
/product="hypothetical protein"
/note="GO:0016820 GO:0016787 GO:0005388 GO:0015085
GO:0046872 GO:0000166 GO:0016020 GO:0016021 GO:0006816
GO:0006812"
/note="partially similar to EMBL:AP008216"
/db_xref="GOA:A5BPG5"
/db_xref="InterPro:IPR006068"
/db_xref="InterPro:IPR023298"
/db_xref="UniProtKB/TrEMBL:A5BPG5"
/inference="similar to DNA sequence:EMBL:AP008216"
/protein_id="CAN74839.1"
/translation="MEKPPVGRTEPLISNIMWRNILAQALYQIAVLLTLQFRGESIFG
VSEKVKNTLIFNTFVLCQVFNEFNARKLEKKNVFKGLHKNKLFLGIIGMTIILQVVMV
EFLKKFADTERLNWGQWGACIGIAAASWPIGWVVKGIPVSDKP"
BASE COUNT 2192 a 1336 c 1205 g 2086 t
ORIGIN
1 atgtgctctc catgtaacca agggcaaaaa taaaataaaa aaaacccraa ccaacccttt
61 ttttccttca ttctttttat tcttctttct tcactcyttc tctctcctcc ctaatcctct
121 atcctctctt tgatgagatg aaaaagctaa ttgtgatgat tgcatctctt gaaattttag
181 gtttgaaacc tcaaatattg gtaagcattc agaaatggac tttgttcatc acaacaaaaa
241 acccaaattc caaactcaaa ttccatttta ttcaaatcga cagcttccac aattcaacaa
301 aatcaagttt ataacaataa ggagttgaaa atccaacttc aatgtcaaag cttcaaaccc
361 tccaaaagat agaattaaaa gaagggaaaa aaaacacttc aattcggtat gattacctct
421 aattcacaac caaagatcca aaaaaatcaa gctttttgaa aaaacccaaa taaaaaatct
481 gaaaattcta acataaatat catcaaaatt aaagcttttt ctttatgggt gttaccgcca
541 tggaagacct acatcacacc attttgcaaa ttttctaaga aaaatcttag caaaaccaaa
601 acttttcctt gatgggtatc ttctgacagg tgaaaaagat atgcccaaat gcttatctac
661 atcaaccata gtggaaaggg ggaggagaga gaaagagtaa agagagaaaa agaagaagaa
721 gaaaaagaac gaagagaaag attggctggt tagggttttt aaaaaaattg acctttttac
781 tctcggtcat strgagagca cttgtctttc cgttcaaaaa aataacatcg tctctcaaaa
841 aatgcacatt gcatgcaagt ataaaggatg aggggtacat tgcttgattt tgaacttaaa
901 gggacaatat gcaaaacaca ttataggttg aaggggtaag gtataataaa ccttaaaagt
961 tttcactttt agtattgaag ttcttactac tattattttt aaaaacaaaa aacaagaagt
1021 gtatccaaac atatactaag atttctgttt ttgggaacat wttttctaag tttcctccca
1081 ttgaagctat agactattaa aattgtaatg cttgcatcac tcgatccttg tttgtttctt
1141 tgtgccttct atttgattag tcttgtaatc accatatgtt gcagaattta tactattccg
1201 gaacttggga ctggtwttat tctttcccta tactgttgat acatgattat tacatctcct
1261 ctgtcatccc tgccctgact tgataccaac aagaagaaac aggtgtccaa gtttacaatc
1321 acagggttac atttatatga actgaaacac aaaaagcttc ataagaaatg actctatgat
1381 tttaaaaama ttcatataat tttcgtaaat tcaaccatac atcaattaca aatccacaat
1441 gagaatgaaa aaaaawaawa aaaatctaat aaatgaatag atactacttt gtagagggaa
1501 gtttgagtat aaaaaataat ctgtatatct gaagtgatgc tcctaccact ttagatagct
1561 taggaatggt ttatctgaaa caggtatgcc cttgacaacc caaccaattg gccaagatgc
1621 tgcagcaatt ccaatgcatg caccccattg tccccaattt aacctctctg tatctgcaaa
1681 tttcttcaaa aactccacca taaccacctg aaggataatg gtcatcccaa tgatccccaa
1741 aaatagcttg ttcttatgta gccccttaaa cacattcttc ttctcgagct tccttgcatt
1801 gaattcattg aagacttggc aaagcacaaa agtattgaat atcaaggtat tctttacctt
1861 ctcgctcact ccaaagatcg attctcctct gaactgtagg gtcaagagga cagctatctg
1921 atacaaagct tgggctaata tattccgcca catgatgttg gagataagtg gctctgtccg
1981 acccacgggt ggtttctcca tcagctccct ggtgggttgc tctgtggcga gggccagggc
2041 acctagtgtg tccatgatca agttcaccca caataactgc actgctgtca atggaacctc
2101 accagctgaa actgctgcca caaagttgat taccagggct gcaacattca cagtcagctg
2161 aaactggatg aatttctgga tattgttata aacacatctt ccccatctca agactgttgc
2221 cactgaagca aaattatcat ccaagatgat gatatctgaa ctctcctttg ccacttctgt
2281 gccctgaatc cccatgggaa agtcctatgt cggcttcttt taatgctggt gcatcatttg
2341 tgccatcacc tgtcactgca accacatggc ctttcagttt caggcattgt accatgagaa
2401 gtttatcaaa gggagaggat ctagccatca cacagatttt atccactttc tccattctct
2461 cctctggggt gtacttccgg aaaacctcac cttctaccac tgcttcacya ttcatgtctc
2521 gatcaggtct tagtattcca cattcagtgg ctattgctct tgcagtgaag acattatcac
2581 cggtaatcat tttgacattc actccagcgt attggcaatc ctccacagct tttcttaccc
2641 ctggtctaca tgggtctttt atccccacaa gtcctatgag ggtcaagctg tcttctgtta
2701 gcctttgaca gccttcgcta atttcctgct cttcctctgg aatttgttta tgtgcaaaag
2761 caatgcaacg gaggctgcta gcggccatac cttgaattat ttgctcaaat gtcatccttt
2821 cagcatcatc cagatctttc atgcttccag aagcatcata gtaacttgaa cacattgcta
2881 atatcatctc tgctgctccc ttccagtgca catgcatttt gttgtcagcc ttcttcctca
2941 ttaaaatccc gcttcttttc ttctctgaat tgaaggcttc aacatgaaga atggtatgat
3001 tctgctttag tctctccata tccatatcaa gttccagaac agcccaagaa agtatggctt
3061 tttctgtggg actaccagag aactcgaatt cagatcctga agtggccctg taaatgctac
3121 cagttgtgtt cagagcaact ccttgttgaa tcagtttgag aacatttgag gcaattgaag
3181 aggaatcttc aacaggttct ttgycaagcc aatactttgt caccttcatc tggttcagag
3241 taagggttaa cctgttttat cagtacaaat agtagttgca gaacccatgg tctcacaggc
3301 aggaagcttc cgaaccatag cctggtcagc catcattttc ttcattgaat aagcaagtgt
3361 gagcgtgacg gccaaaggca agccttctgg aattgccaca accacaatgg taactgctgc
3421 agcaatgatt ctgaccatgg cgttcactat atcatcagcc tttgtcttgc taccatagaa
3481 ctcctgattt ccgttctcat cttctgtatt cccggtgaag tagcgaacca ccaacacgac
3541 aagaactaga aaagcaatgg ccaaaccaac cttgcctatt gaagaagtca gcttgttaag
3601 acgggcttgt aggggtgttt gttcattgat gttgcggctg attgtgctca tcatctcccc
3661 ccatattgtg ttcataccaa cagaagtcac gagcatttga gcatatccat cagccacttt
3721 ggttccagaa aacaagaatg gattctgggt gctattaact tgtacatggt cgctctcccc
3781 ggtcatgctg gattcatcca cttgtagtga atggccgtcc aagaataagc catcagcagg
3841 aacttggtca ccgattttta agcaaacaac atcaccaaca acgatttcaa aaatagaaat
3901 cttctgacga tgcccatctc taacgacctc aacctcgatg ttgttgctga ctttagacaa
3961 cttttcgaac tgtcggtttt gcctgaagtt actcacagca gaaacagaaa tgactagaaa
4021 gacagcaacg aatatgcttc caccatcata ccacccttcc ttcagcccat gctctttaat
4081 tccgaaaccg agggagagtg tggcacaagc tagaagtatg agaatggtaa gatccttaaa
4141 agcttccaac acaaagtaga agaagctttt agtaggcggc ctcgggtatg tgtttgaacc
4201 gaacgtttcc tgcctttcag ctacatcttc aacagcacca tggatgccat ttttggtatc
4261 tgtttttaga gcgtcagcca caccttcaac tcctcccaat tcgcgaagtt gatctaagtt
4321 tttctctttc accactgcag tgaggcttgt gtgatcaatg tttgagaagg caacgtgggg
4381 ctcaacactg acgacaacaa aggaaggagt actaagcggg agtttgctgc ttttcttctt
4441 attgagaaga gaatgaaggg ccctggaaca atagatggta gcaaaggccg aatgccattt
4501 cttgttgggt ttgctaaggg tggctggcac atcgagtatg gactctatgc aacttaagtt
4561 aaaatgcaaa atgttagaca tgttattcaa cagacaaaag agtctgataa agatgatgaa
4621 gcggacacga agatgaatta tttaacaaag taacgtacca cgatgaaaga aaaaagaatg
4681 aaggaaatga aaattgaagc tmatgtatat gaagaaaatg tgtgagacta aaaaccccga
4741 aatgggaaca accctgtgaa tgcatgtgtt taaggttaag gatttgccac ttcttatagg
4801 agagtagagc cggtgtattt cattgaatat gaagtgtttc tactgagaag atcatgtttg
4861 tcgggtgtaa attggctact agctaattct tagtgcacaa ggataataaa taaaatagga
4921 aatagtatgt taataaataa aataaaaaat atagttgact agtcaacgcg gtacccagaa
4981 attcccagaa gtgtcaaaag actcgttttc gaggatctca agacaaccac caatagctcc
5041 ggctgcgctg ggtgatgcga aagtgcttag ttttgacttt tgagggtcga cgtgcgtgtt
5101 tttttttaat actaaagcgt aaagaatcca acttcaaytg tggccgcgaa gctttcataa
5161 tcattsagcc gaatattaca ggtcatgaaa cgcaggtttc agatgtagtt tcattgcttc
5221 ctcgctttgc cttccttttt tttcrgtcgg taattggggt cggttaatgg acttttcatt
5281 tgtttctaat aattctaatc atctttctcc atacttattt gcacaccacc agaagatttc
5341 ggcatttcgc agcttccacg tctgggagag gcaagaacta agaagatgtc agtccacaaa
5401 gctctgttgg tatatatatc agggaatgta cagtataact aaaattgttc aaaagttttt
5461 cccttgttca gaaagccatg agaggaaaag aagaggtatt aaaccacatt agaggatcat
5521 tcttagagaa aaattaataa ataagaagaa aacaaaatct caagtttgaa tagaatctca
5581 tttgcaaatg cataaatggg ttctagctga ctctttttct cgatttgtta gaaaagttca
5641 attcaatcga tggggatctt aatatggaag taaaggatgg cctgattaat ttacataaaa
5701 tattgtgctg aatcaagagt gaattgttgg tggtcatact tatgtatgat tatttaatgc
5761 atagctagcc tttttgatcc agtgagaaaa agtaggatat tagtatatta aaataaggcc
5821 acgtcactta ttaaaaaata tgataactta aaaggtgtaa gacagttctt ataaaagttc
5881 aaagttggtg tgaattgcac aagaaggaca atctcatttt ggataatccc aaatcataag
5941 caaaacttgt atattgaagt tttgagaagt ggaaagcacc accaagtttc ttttattgtt
6001 atgaccaaga aagcacatat gatgggaagt gggaacatga tctaaataat tttatgttcg
6061 ccactataac aaacttggtg gagagcacca ccaagtttct tcgaaggcct tcacattgat
6121 cccacatcga aaaggagagt aaatatgaag aattttataa actggttcgc cattttaaca
6181 tgatgaccca ttttttaaga atagttgtat tatcttttct ttttcaagaa caataaaagt
6241 agagaaaaat ttttatttta tttttttcta tcaatgtctt tccctccaac tttaacccat
6301 catatataat cttaaaagtt ggcttagaat gatttggcag aaaagccgtt ttagcctaaa
6361 aaagtgtttt tttttttata aaaaaaaaaa aaaaggtatt gagcaaaatt tggaatttta
6421 aaaatctaaa aaatcactta taacattaaa acaagtgttt ttttttttta gagaaactga
6481 tgcattagga ataaatttct caattaaata ataaatatgt taactagatt aggaaattga
6541 ttatgttgat tcaaataata tttaacttta cttatattaa ttaggaaata aattacacaa
6601 tgtattatct tctctttttc aagaacaata aaagtagaga aaaaataaat ttttatttta
6661 ttttatttta tttttyctat caatgtcttt cccaccaact ttaacccaac atatataatc
6721 ttaaaagttg gcttagaatc atttggcggt aaagcccttt tagctaaaaa aatgtttttt
6781 ttttactttt aaaaaaagtt aaaatttgtn aaattagtaa acaactttaa aattaa
//