LOCUS AM465940 2800 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X152848.5, whole genome shotgun sequence.
ACCESSION AM465940
VERSION AM465940.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 2800)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..2800
/organism="Vitis vinifera"
/chromosome="16"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS 831..1334
/locus_tag="VITISV_008075"
/product="hypothetical protein"
/note="GO:0008270 GO:0046872 GO:0003677 GO:0003676
GO:0016787 GO:0015074"
/note="partially similar to EMBL:AP008212"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5BNS3"
/inference="similar to DNA sequence:EMBL:AP008212"
/protein_id="CAN83445.1"
/translation="MYRRTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRS
VKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMA
KNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTKGMPPLKFKDHVVN
MGLSXLM"
BASE COUNT 876 a 527 c 565 g 815 t
ORIGIN
1 tcgaktacac ggaaaccttt tctcctgtat ctaagaaaga ttccttacgc attatattgg
61 cattagtagc ccactttgat ttggaattgc aacaaatgga tgtgaaaact gcatttctta
121 atggagagct agaggaggag gtttacatga aacaacctga aggattcccc tctagtgatg
181 gtgagcaatt ggtttgtaag cttaagaaat ccacatacgg tttaaaacaa gcatcccgcc
241 aatggtattt aaaattccat aacataattt cttcatttgg ttttgwwgaa aatgttatgg
301 atcaatgcat ataccttaag gtcagtggga gtaaagtttg ttttcttgtt ttatacgtgg
361 atgacatctt acttgcaacc aatgataagg gtttacttca tgaggtgaaa caattcctct
421 ctaaaaattt cracatgaag gatatgggtg aggcatctta tgtcattggc attaagatcc
481 atagagacag atttaaaggy atcttaggtt tgtctcaaga aacctatatc aataaagttt
541 tagagagatt tcggatgaag aattgttcac ctagtgtttc tcctatagtg aagggtgata
601 ggttcaatct gaaccaatgc ccgaaaaacg atcttgagag ggaacaaatg aagaacattc
661 catatgcttc tgcagtcgga agtttgatgt atgctcaggt ctgcacaagg cctgacattg
721 catttgctgt tggaatgtta ggacgatatc agagtaaccc aggtatagac cactggaaag
781 ctgcaaagaa agtgatgaga tatcttcaag gaaccaaaga ttacaagctt atgtacagac
841 gaacaagcaa tttagaggta gttggctact cagattcaga ctttgctggc tgtgttgatt
901 cacgtaaatc aacatctgga tacattttta tattggccgg tggagctata tcttggagga
961 gcgttaagca gaccatgact gctacttcta ctatggaagc tgarttcata tcttgttttg
1021 aggctacttc acatggtgta tggcttaaga gtttcatttc cgggcttaga gttatggatt
1081 caatatctag gccattgagt atatattgcg acaattcagc tgcagtcttt atggcaaaga
1141 acaataaaag tggaagtcga agcaagcaca ttgacattaa gtatctrgcc ataagagaac
1201 gtgttaaaga aaagaaagtg gttattgagc acattagcac tgaattgatg atcgctgatc
1261 ctttgactaa gggcatgcca ccattgaaat tcaaggatca tgtagtgaac atgggactta
1321 gttyccttat gtagtttcta ttgtacaaac tcttgttatg atgttttctc atattgatgc
1381 gcatttttta tttaattttg agaaaattca acttcattgg accaagaatg aacatagggt
1441 ttattcatta agtaatattg ccacataaag tataatgtta agaaatgagt acactgtaat
1501 acatggaagg taacactcgt taaatagagg acttatcgcc atgattcatg tatttgttac
1561 ttaatactga taattgatgg attaagatag gacattaagt taaaagtgtg gaccaagtgg
1621 gagaatgtta tcaccccacg tcgtctccac gttcaccacc atgaaggggt gatcctgaag
1681 tggtccagca cccacgtcct ccaccatgat cctacttttc cgctgcgttt aaggaaggtg
1741 tggcaagtct gcagaaacgt ggtatgatgg gaggccacgg ttatatattt ctcatggtcc
1801 cgaactcgat atctgccgtc ttcattattc agtaawacac catccatagg agattatcag
1861 agtttggaaa ccaaaagctt gaaccgatta caacaacttg atccgatggc tggaggtaag
1921 tggactaccc taagtctttt atagatttaa ttcatgttgc aagtgttcat tgaattgaat
1981 atatcatgta taaattcwwc atagwwttyt tsmagaggag aacaattaca atttttttgg
2041 agtggaaaat gatcataatt tttcagaagg accataatca gaatttttct agagtggaca
2101 cactaccaga attgaagaaa ccaacacgcc atcgacaacc tctctccatc ttcacgcact
2161 gccagatttt tatagccact cacacatggc cacacgatct cacatgcacc tttttctcac
2221 atgcacccag atttctatcg ccttcatcat ctcacccaca cccatatgca ccaccgccat
2281 accacacacc accaccaccc aaacctccaa aatccgctca cctttccaat gtcggtgatg
2341 atcaaatgcg agattcgaaa ctgatcgatt taaaatcaga actcttgcat atgaggaaca
2401 ccaccttaag ccatgcaaag gagtagtcac gctttctcta actgccaggc attcgatgaa
2461 acgtgttttt gagaagaagt ctctagaatg gaatctttca gttgtaggaa aataggaaca
2521 tacgagaaaa agttatggag agagactaag aaggttaaga gaagagagag atcatcaaac
2581 agaaaaactt tcttggtgtt cttggagaag tggacttcat tttcggtaac actagatcga
2641 cgtttgatta ccacattcaa cgttagagcc attcaacgtt agagcaggag accagcttca
2701 ccagcataaa ttcgttttgs ccaaaggatt catcaacagt gcgtcattta gagaatatca
2761 gcagatcatc gattaatctc gagacctact gttcaagatt
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