LOCUS AM463877 3092 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X086090.3, whole genome shotgun sequence.
ACCESSION AM463877
VERSION AM463877.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 3092)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..3092
/organism="Vitis vinifera"
/chromosome="7"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(1432..1766,1827..1935))
/locus_tag="VITISV_030616"
/product="hypothetical protein"
/note="GO:0015074"
/note="partially similar to EMBL:AP008212"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5BLT0"
/inference="similar to DNA sequence:EMBL:AP008212"
/protein_id="CAN61535.1"
/translation="MYRRTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILTAEFISCFE
ATSHGVWLKSFIYGLRVMDSISRPLSIYCDNSTAVFMAKNNKSGSQSKHIDIKYLGIR
ERVKEKKVVIEHISIELMIADPLTKGMPPLKFKDHVMNMGLSSLM"
BASE COUNT 906 a 723 c 478 g 985 t
ORIGIN
1 tttcttttta ggaacttaaa atggaataat agatgacatt gatgtttcag ccaatgtagt
61 tgctataagt ttctccattc atggcaacac ctttaaggga ttgaggaagg tttatgtaac
121 cagtcaaagt gcttcctgga ctttcagcca tacatctttc aaagccaagc ctgagtgctt
181 cataagcagt acagcctgct tcataaccag tttttctgaa tttttctaca tcatgatgga
241 agtatccata aaaaattcga gaacattcat tgctgacgga gttgttgaag gtaacctcat
301 atgctcagag atgccatcca tgtttgctaa aatatctatt cccagacctc tgtaatcaga
361 tgaacttggc cactgctgca tttggctaga ttaatttgct aagatcccca atgatttaaa
421 tcagcatgct cacccaacct accttaacca cttctctgcc tttcaatatt catatccacc
481 tttcataata ggatgatacc catgcatgcc accacatttc ctctctctac gttccccatt
541 acccacttct ctttctaact ctccactctt ccaccctcac cccccatcaa aaccaccatc
601 ctcccatttc cattacttca ttcacgtgca tggggccccc atgcacacgg ccacctcaat
661 caccccccat gcttacatac ccatcctacc gtccacaccc atgcacacca tcatcttcca
721 taccctcacc cccgttccat ttccaacctc catacccatc acgtcctctt tcatgctcat
781 tgtgtaggaa attcataatg catataaaca attcattcat atgtaactta tgtcatactt
841 acctctagcc attgttgggt tgcaagtctt tggtttccaa aactctatct ctccttatgg
901 atggtgtagt ttctgaagat tttcaacagc atgagagagg agcttgggac caagactgat
961 atttaaaata caaagaaaat gtggcttccc atcaaagcca cgtttctctg atttgccaca
1021 cgatgagcag ttgatagaaa cgtgctcctt aacagtagct acatgatgaa ggacgtggcc
1081 aagtgttgga ccacttcagg gcagcggaac gtgggtggtg aacgtcggtt atttgataac
1141 attctcccac ttggtccaca tttttaacct catgtcctat cttagatcat catttttccg
1201 cattaagtaa caaatatatg aatcatggtg ataagtcctc tatataacga gtgttatctt
1261 ccatgtatta caatgtattc atttcttaac attttacttt atgtggcaat attgcttaat
1321 gaataaaccc tatgttcatt cttggtccaa tgaagttgaa ttttttcaaa attaaataaa
1381 ggtgcacatc aatatgagaa aacatcataa taagagtttg tacaataaaa actacataag
1441 agaactaagt cccatgttca ttacatgatc cttgaatttc aacggtggca tgcccttagt
1501 caaaggatca gcaatcatca attcaatgct aatgtgctca ataaccactt tcttttcttt
1561 aacacgttct cttatgccta gatacttaat gtcgatgtgc ttgctttgac ttccactttt
1621 attgttcttt gccataaaga ctgcagttga attgtcgcaa tatatactca atggcctaga
1681 tattgaatcc ataactctaa gcccgtaaat gaaactctta agccatacac catgtgaagt
1741 agcctcaaaa caagatatga actcagcttc catagtagaa gaagcagtca tggtctgctt
1801 aacgctcctc caagatataa ctcaaccggt caatataaaa atgtatccag atgttgattt
1861 acgtgaatca acacagccag caaagtctga atctgagtag ccaactacct ctaaattgct
1921 tgttcgtctg tacataagct tgtaatcttt ggttccttga agatacctca tcactttctt
1981 tgcagctttc tagtggtcta tacctgggtt actctaatat cgtcttaaca ttccaacaac
2041 aaatgcaatg tcgggccttg tgcagacctg agcatacatc aaacttccga ttgcagaagc
2101 atatggaatg ttcttcattt gttccctctc aagatcgttt ttcgggcatt ggttcagatt
2161 gaacctatca cccttcacta taggggaaac actaggtgaa caattcttca tccgaaatct
2221 ctctaaaact ttattgatat aggtttcttg agacaaacct aagatacctt taaatctgtc
2281 tctatagatc ttaatgccaa tgacataaga tgcctcaccc atatccttca tgtcaaactt
2341 tttagagagg aattgtttca cctcatgaag taaaccctta tcattggttg caagtaagat
2401 ggcatccacg tataaaacaa gaaaacaaac tttactccca ctgaccttaa ggtatatgca
2461 ttgatccata acattttcaa caaaaccgaa tgaagaaatt atgttatgga attttaaata
2521 ccattggcag gatgcttgtt ttaaaccgta tatggatttc ttaagcttac aaaccaattg
2581 ctcaccatca ctagagggga atcctttagg ttgtttcatg taaacctcct cctctagctc
2641 tccattaaga aatgctgttt tcacatccat ttgttgcaat tccaaatcaa agtgggctac
2701 taatgccaat ataatgcgta aggaatcttt cttagataca ggagaaaagg ttttcgtgta
2761 atcgattcct tctttctaag tgaacccctt tgcaacaagt ctggccttgt atctctcaat
2821 gttgcctaat gagtctttct ttgtcttaaa aacccattta aaaccaatgg tttttgcacc
2881 attaggcaac tcaacaaggt cccaaacatc gttgcacttc atggaactca tctcatcctt
2941 catggcattg taccacaatt ctaattcttt acaattcatg gcttgtgaaa atgattcggg
3001 atcattttcg gctcctatat tatagtcaga ttcttgtaga tacactacat aatcactagg
3061 aattgctgac ctcttagttc gagtagacct tc
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