LOCUS AM463780 10004 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X262040.25, whole genome shotgun
sequence.
ACCESSION AM463780
VERSION AM463780.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10004)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10004
/organism="Vitis vinifera"
/chromosome="14"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(638..2623)
/locus_tag="VITISV_031965"
/product="hypothetical protein"
/note="GO:0004713 GO:0004672 GO:0016301 GO:0005524
GO:0000166 GO:0005515 GO:0006468"
/note="partially similar to EMBL:AP008208"
/db_xref="GOA:A5BLM9"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR001611"
/db_xref="InterPro:IPR003591"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR017441"
/db_xref="InterPro:IPR025875"
/db_xref="InterPro:IPR032675"
/db_xref="UniProtKB/TrEMBL:A5BLM9"
/inference="similar to DNA sequence:EMBL:AP008208"
/protein_id="CAN79070.1"
/translation="MECVVSSVVAVLLLHTVSMTHAASTHSSTDHSQVVAEADALRNS
GWWIWSHPATSNHCSWLGITCNEAKHVTGIRLRNYQVPIGEVSELNLSLLPSLNFLIL
SRMGLNGSISDQIGSLTKLTILDLSHNQLTDPIPHQIGSLTKLTHLDLSFNQLTGPIP
HQIGTLTELTYLNLSSNVLTDVIPSSLGRLTKLTHLDLSFNQLTGPIPHQIGTLTELT
YLPLSSNVLTDVIPSSLGRLTKLTHLDLYCNKLIGSIPHQIGSLTKLTHLDLSSNQLT
GPILNQIGTLIELTYLEFSGNELTGVIPSSLGRLTKLTHLGLFYNQLNGSIPHQIGTL
TELTYLHISGNELTGAMPSSLGCLTKLISLDLCKNQINGSIPPEIGNIKSLVTLDLSD
NLISGEIPSSLKNLKKLGRLDLSYNRLSGNLPSFITNNCKQTTINLSQNDHLEGYAGY
SICTRGHTISLTLIISLSLTLFFVTLILGFAFGLWWKKRQLQPESMAAKKNGDLFSIW
DYDGRIAFEDMISATEDFDIRYCIGVGGYGSVYRAQLPSGKVVAVKKLHRSEIDEPTY
LRSFKNEVQMLGQIRHRNIVKLHGYCLHNRCMFLIYMYMERGSLYCMLSDEVEAVELD
WVKRVNIVKNMAHALSYMHHDCIPQSFIGTYQAITSF"
BASE COUNT 3598 a 1488 c 1548 g 3354 t
ORIGIN
1 attttacaaa atgaatkwwa kytatttsat caagttaata gaaaatttga ggaaacaatc
61 taaccaattt cttaaaacay ttaaaaaact atgaatttgt ttaaaaaaat wggtgagaaa
121 tatgttattt attgatatct cttagtctat tgttctaaaa gtcttttctt tttactatac
181 atgggaaaaa aatttctatg tatttcttaa aacatctaat raaccatgaa aatattaaag
241 aaattggtga gaaatatatt ctttacaaac atctctaact ctaatattct caaccctttt
301 ctttctatta tatatgataa aaatatttcc taagagtttc tataatatga ctactataag
361 ttatttttga acttctatta tgatttttct aagtttcttg agaaatcttc aattttctct
421 tattcatcac ttctcaaaac aagaaaagaa aggaaaaaat agatgaaata ctaataaggt
481 atgtatgcaa attaaagtag aaaatataat aaggtatgga tatgtttacc aggtgcaatg
541 tagccgtagg tgccagcaac aagggtttga tttgaggaat cggggtctaa taatctcgct
601 gtaccaaaat ctgatacaaa accctcaagt tttgaatcta aaaggatgtt attgcttgat
661 atgtcccgat gaatgattgt gggatacaat catgatgcat gtaggataat gcatgagcca
721 tatttttaac aatattcacc ctcttaaccc aatccaattc aacagcctca acctcatcgc
781 tcagcataca atacaagctt cctctttcca tgtacatata aatgagaaac atgcacctat
841 tatgtagaca ataaccatga agtttcacaa tgttccgatg tcgtatttgt cctagcatct
901 gtacctcatt cttaaaactt ctcaagtatg tcggctcgtc tatttctgat cgatgaagtt
961 tcttcacggc aaccactttt ccactaggca gttgtgctct ataaacactg ccatagcctc
1021 caacacctat gcaatatctg atatcaaaat cctctgttgc cgagatcatg tcttcaaaag
1081 caatcctccc atcatagtcc catatggaaa acagatctcc attttttttg gctgccattg
1141 actctggttg aagttgtctt ttcttccacc aaaggccaaa agcaaacccc agtattaagg
1201 ttacaaaaaa caaggtgagg gacaaagaga tgataagggt gagtgagatt gtgtgtcctc
1261 tagtgcaaat ggagtaacct gcataaccct ccaaatgatc attttgggat aaattaattg
1321 ttgtttgctt gcaattgttg gtgataaagg acgggaggtt gcctgacagt ctattatacg
1381 agagatctaa gcgccctaat ttcttcaaat tttttaggct ggaaggtatc tctccactga
1441 ttaaattatc agaaaggtct aaagtgacta gactcttaat atttccaatt tctggaggga
1501 tggatccatt gatttgattc ttacaaaggt ccaaagaaat caacttagtg agacagccta
1561 aagatgaagg catggcacca gtgagttcat tccccgagat gtgaaggtag gtgagttctg
1621 tgagagtacc tatttggtgt gggatgctac cattgagttg attataaaaa agaccaagat
1681 gggtgagttt agtaagacgg cctaaagatg aagggatgac accagtgagt tcattcccag
1741 agaactcaag gtaggtgagt tctataagag tacctatttg gtttaggatg gggccagtca
1801 gttgattact agaaagatca agatgagtga gttttgtaag actacctatt tggtgtggga
1861 tgctaccaat gagtttatta caataaagat caagatgggt gagtttagta agacggccta
1921 aagatgaagg gatgacatca gtgagtacat tcgaagagag gggaaggtag gtgagttctg
1981 taagagtacc tatttggtgt gggatgggac cagttagttg attaaaagaa agatcaagat
2041 gggtgagttt agtaagacgg cctaaagatg aagggatgac atcagtgagt acattcgaag
2101 agaggttaag gtaggtgagt tctgtaagag taccgatttg gtgtgggatg ggaccagtta
2161 gttgattaaa agaaagatca agatgggtga gttttgtaag actacctatt tggtgtggga
2221 tggggtcagt caattgatta tgagaaagat caagaatggt gagtttagta agactaccta
2281 tttggtctga tatgctacca ttgagtccca ttctagaaag gatgagaaaa ttgaggctgg
2341 gaagtaaaga aagatttaat tcactaacct cacctatggg tacttgataa tttcgtaatc
2401 ttatcccagt gacatgtttg gcctcattac aagttatgcc caaccaactg caatggttag
2461 aggtagctgg gtggctccat atccaccaac cggagttgcg cagagcgtca gcctcagcca
2521 caacctgtga gtgatcagta gatgaatgag ttgaagcagc atgagtcatt gacaccgtgt
2581 gcagcagcag caccgccaca acactagata ccacacactc catttttccc atttgatatt
2641 tgtctcactt catacatccc accacccccg ctttatactg tgacattggt gtctatgcca
2701 gctcttccgg gaagcatagc aagtcaacca agtcttcttt ggtattcttt tcaaaaagaa
2761 aaaattttta aattaaaaaa taaaaataaa aaatcacaca aaataaaaac aaacaagaaa
2821 ctttcttttc caggatcatg tagcatattt gtaactgtga atcctttagg tattattaaa
2881 tccattcacc atattttcat ctaaattctt gatattcacc tcttgtacag taccactttt
2941 gccgcaattt aaaatgctat ttatgattaa catttcttat aatttccaag tttgaggtag
3001 ctaggtaggc atgtctaata agaattagtt ttgaaacaaa tgaaggctta tttgagagaa
3061 gtttccatga aatccagcta tcaactgtag tccaggaaaa agtaagggaa ggggagcaga
3121 gaaagcattt tcctataaca atttccatta tttgcctctc cacagaagat gggggtgaat
3181 atttggattc catggaatac agtcaagagt ggataggggt tggtttggta ggccaaatta
3241 aggcaacgag gagtcagacc aggaagaaga ttgttaggta ggcgaaataa attatatatg
3301 acatgtccat atatccaatt ttctacacca tatggcacgt gtagaaaatt tacctgtcac
3361 tcacactcaa taatacataa tttgtaaaca ctgcaggaca aaacaaatag atatatatgg
3421 gggaaaatag cctcaaattt catccttgct accaacagaa gtttgagcac ctatacttga
3481 gtaatttgag aaatattatt gacaatgaag aaaataaaaa taagtttaaa tttaataaac
3541 tatttttata tcatatttca aactcatttt atttatttaa attttctaca taaagattaa
3601 ataattttaa aatgtataat ttttttttta ctatttctaa ttctatttta ttttctttcg
3661 tatcttctat aataaaatct aataaaaaaa atcgtttttc ttaataattt tttttcttca
3721 atacttttca tgaatcaaat ataacattaa agtattgagg taaaataatt atcagactaa
3781 taaagattaa tgtaacaata tttcctttga tttgatgtca aaagcactcc aaaaaattga
3841 tttaacccgt atattgtaac atagtattcc atgaataaag tacttgatgg ttttaataat
3901 tttttttgga atagtatgtt ggcttctttg ttgttacttc atttttcaag aaaaatctta
3961 taatttgaca tattagcaag gttatgagaa aaaaaaaatg ctattgttat ttttccttag
4021 tgacatcaat gtactattca aacaaataag tagaaagctt ggtagaccaa ataaattaca
4081 aaggacctat tattttcaat acatgcgttt ttctaaacca tgtgaccgac ctagaaaaat
4141 tgtaggtcaa catttctctg ttagaccttt caagcttcca aacaatgtgt tatgcactct
4201 caataatgca agactatcgg atatcacaca aatttccaca tgtaccttag cttttcaacc
4261 atggctaaca tcattttcat tctaatatat aattttatat ccaaaaagaa attagttatt
4321 aacgttcact tgaaaaaaaa taaaaaaaat atgaattaat gaagtagtaa atgattatgt
4381 ttatcaacga taagttaaaa atcatgtaga tatataatta ggataaaagc catatttttt
4441 gtttacacaa ccattattag gatttcaatt ggttataaaa tttgttcatt tagctcaaat
4501 tttcatatat caaattcaag atttaggtct atttggaaca atttctaaga agttaaaatt
4561 cttttttaag ctctcactaa ttttgtttaa agggtttatt acttaaaaaa aaaaattgta
4621 ttgaagcaac caaaacatat attgcttttt gtaaaagctt tattttggtt tatataaaag
4681 ttttttttat ttttaataaa acttttatta tactaatatt gtcctttcaa aaattataat
4741 tttgacttca aatttaattt ctaattaaaa ccaaagatag gaagttatcc caaatgaaaa
4801 aataattgtt caaaatttat atatcctttc tttctttgtt ttttaaatgt tccaagggta
4861 caataaaata gtaggatacc ataaataaaa agaacatatt tgttttcaag taaaatacta
4921 aaggattata agccacacaa caagagcctc aaaaccttgg ttgaaaacat cattcttcta
4981 cattgttcta atgaatttgt agtcatgatc ataattgcta gagtaaaaac acacatacaa
5041 gtataagcat tatagtatag aattggttgg tataatactt tgcagtgggg atcgacaaac
5101 tcatcatcaa aagatgactg tgtgggcacc aaaaattaaa gacatgaact tcactggata
5161 gaggcatgca tatattttcc aaaacccatt ccatgtttta aaaaactagc accaaattgg
5221 tacttttgat actaaaaaag tattaaagaa agaaaaaaaa atggtaagaa caataatttt
5281 cttttttttt ttacgatata aaatataaaa gaaaatcaaa tataattaaa aatagttaaa
5341 aaaattatat atttttaaat tatttaatat ttatataatg aaggaaaata aataaaacaa
5401 atttgaaaaa gtatacaaaa ataatttatt aactttaaac ttatttatta tttttcttca
5461 ctttcatttt ttttttacct ttactttttt tctctaattt cttttcttca cattttccct
5521 caaattttta ggaaaccaaa gataccataa aaattttttc gtgagtttaa ttactgatat
5581 gtatgacata tctcactcat ttaaatctta aatcctttgc tcccatatgt atatgataga
5641 gttcgaatat ttatttatct aacaaaaatg acattagaat tgagttgcta aattagtata
5701 aatcatgaaa atggagtatg attggcatgt tgaataccca aaagcagcca aggagttaaa
5761 agcaaatgtc tctctatgaa tgtgggtctt ttcgcccttc aaagttttct taattttaga
5821 aggaacacaa ataataaaac aattttgtag tgattccttg atgaccaccg aaaaatagtc
5881 tttttttttt tttttttgtt ttctcttgca ctccaacgtc aaaatacaag gtaaacaaac
5941 aaacccatga aggtgagaag attaataaaa agtctaaact gttctttaaa aaaaaaaatt
6001 ggttttagat tttgcatttc catattcata acttgcatct aagctcccaa ctatatgwaa
6061 taatttkwat tagtgagaat aataattttt tgacatacat tcaaattcaa atccaaccca
6121 ttagtgattc tgacgaccca ttttgtggat ggtataagga gacattattc tttgatttaa
6181 aggaaaagga aatacacaaa aacaacattt catatcaatc ctttcattat ccattcaaca
6241 tttatatctt catctaaatt cttgattttc acctcttgta caccactttt gacctaattt
6301 aaaatgctac ttatgattaa catttctatt tccaagtgtc aaataggcat acttaacaag
6361 aacaattttt aaaatatgaa ggctcatttg agaattgaaa tttccacaaa gtgaccaaaa
6421 gtaaggttaa atattagggc aactaatatt cataaaaccc agctaccacc tgtggtccaa
6481 gaaaagggaa gggaatggga acagaggaag caatttctac gaaaaataat gatgttgacc
6541 attgaaaaca accatcatat aattgaaatc aaatcttaag tccaacctct ataactaatt
6601 ggtatcaagg tgtcaacctg aaaaataaag gatataacat gttgaaatat tctttgtatc
6661 agatatatta tctaaaaata tcttacctta tccaactaac caaatatatt ataaattcgt
6721 aaaattgatc aaagtaaaaa gtgatgaaat tcttttgcac atcccttgca tgatcaaagc
6781 aaaatattga tcatggccga attagttgct agccatatat ataatttttt tgatttattt
6841 catagtcaat taatagaatt aggatattgg tggtggatat atgtatttta ttggtatctc
6901 ttaacatatg tagtcaaata tgaggatagg caacaaagat tgggtgaata tttggattcc
6961 attgaagaag gtaaagggta tggatagagg ttagtttggt aggccaagtt gagtcaatga
7021 ggattcagac aaggaggaag attgttaggt gggtcaaata aattataaat acccaacttt
7081 ctaaaccatg tgggacgtgt aggaacctta caagtcaaac aaaacgatag atgtgagaga
7141 agataaattt ctccacatca accttttaat aatagcacct ttttgttctc atatatttca
7201 gacatcaatg ggtgaccatg gggcaccaaa gaatacttca ttagatagag acaaactcat
7261 cactccaatg aagataattt tctgaatcta atttcactct cacatgatac ccaatgcttc
7321 tggttgaagt tttcttttct tcctccaaag gaaaagaaac ccaaggattg agactgcaag
7381 aaacaaggtg atgaggaaag agatgacaat gatgataatt gtgatatttc gccctctctt
7441 gcagtgggct tggtattacg attccaaagg tgtatgatta ttctctctct ctctcttttt
7501 tttcttttct tttgaccaat tatgtttctc ttggataatt ggaagtttcc cctttctttt
7561 tcttttcctt ttttagtttt tatgaaaaaa ttataattct tttagattat atttggtttt
7621 caaaagtttg aggaaaaatg ccaaaaagaa aagaaatgaa gaagataaaa aataaattta
7681 aaattaataa attattttta tatcatattt caaactcatt ttatttattt aattattcta
7741 cataaatatt aaataattta aaaatatata atttttttac taattttaat taaattttat
7801 ttcctttgta ttttttataa taaaacctaa taaaagaaaa tcattttctt taatgttttt
7861 tatttttagt actttcaatg aaccaaatat aatattaaag tcatgaggta gaataatggt
7921 tgggaccata aagattaatg caacaatatt ttctttaact tgacggcaaa agctctcaaa
7981 ataccaccgt gtgcaccatc accagcagcc ccacaacact agataccaca cactccattt
8041 ttcccattta atatttgtct catacgtccc accaccacca ctttataatg tgacattggt
8101 gtctaagcca actcttccgg gaagcatagc aagtcaagta agtcttcttt gcttttcaaa
8161 aagaaaaaaa gaacacaaaa caaaaccaaa caagaaacta attgcttttt aatgactatt
8221 tagcatattt gtaactatga atccttttag tagtaaatcc atgcagcaca ttttcatcta
8281 aattccttat tcttttcagt gctatatatt tatgatttgt atcagatagg catatctaat
8341 aaaaatagtt tagaaaatat gattgctcat ttgagaactg aagtgattgt aaggctaaat
8401 agtatggtaa ctgatgtttc ataaattgtt tgcctatact ttatgtcaaa ttgttagttt
8461 aatatgatat cagagctcgt agatcttgaa tctcttgatt agtttcttga catatatatc
8521 aaaggccaag atgaatttca gatcttcatt gaataaagcc aggaatatgg acactttgga
8581 atgccaattt tggtgaagga gaattcagac aagggagaaa aatttttggt gggtcaaata
8641 aattgtaaag gacccattca tgatgcgatt ttctaaaccg ttttacactt agaaaattct
8701 caagtcaaca tttcttatgg gtcttgaaaa attttccaaa taacttgtta tttacgctca
8761 ataatagaag acttttaaac atcacagaac gataaaggaa taaattgagg agaaaataaa
8821 gatttccaca cttgagtgat tgcatccttt ttgttcttat atggatttag tgtggaaaca
8881 tcaataggcg accatgtggg caccaaagta taaaaatatg acttatattt tacaaaagcc
8941 attcaatgtg taaaaatgtg acccacttta gaaaattggc aagtcaagga agactttgga
9001 aaatttaaga aattttacca tgagcttaat taataacaag tataagcata ttccactaat
9061 ttacaatttt tataatgaaa tattggtcca agactcttcc cggaagcata gcaagtcaag
9121 caagtcttca tgggtctact tgtatgtaaa acttttgatc aggtcgcgat ccaagttaga
9181 ttatggattt taggtttctt tttctttttc ttttcttaat ttcttgagtt ttttctctta
9241 aaaataaaaa attcaaatat aaacacaaga actctccttt caataacttg aatttcacag
9301 ggaggatgaa aattttaaac tatatattta tattttaaaa cacttagaaa aaaaatttga
9361 cttaaaaaga aatatatgga aggaaccaaa atattattct ttgtaaaagc tctattttgg
9421 tttatataaa agttctttta tttttaaaaa attttttatc atactaaatt ttaaaaaaaa
9481 aaaattgtaa ttttgacttc aactttaatt tctaattaaa ataaaaaata agaaattatc
9541 ctaaatgaaa actaattatt caaaatatat atacattgat tatccttttt tttcaatgtt
9601 ccaagggtac aataaaatag taggataaca taaattaaaa gaatatattt attttgaagt
9661 aaaataataa aggattataa gccataaaag agcctctaaa cttttcttga aaatatcatt
9721 cttctgctgt gttataagga atttacagtc attataattg ctaaagtaaa aaaaaaaaaa
9781 aaaaaaaaca taagtataag catcatagaa taaaattggc ttgtagaaca ttttgcaagt
9841 ggggataagc tcatccttca aggatgaggg tggtgggggc accaaagatt aaagacatgg
9901 attcattgga tagaggcatg ccttwatttt ccaaaactca ttcaatgtgt tcacatcgga
9961 aaaawtaggc aagtactcaa gcaagacata aaaaatwtaa mgga
//