LOCUS AM457119 7209 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X050777.23, whole genome shotgun
sequence.
ACCESSION AM457119
VERSION AM457119.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 7209)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..7209
/organism="Vitis vinifera"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(6610..6729,6821..7114))
/locus_tag="VITISV_011124"
/product="hypothetical protein"
/note="GO:0015074"
/note="partially similar to EMBL:AP008207"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5BEX9"
/inference="similar to DNA sequence:EMBL:AP008207"
/protein_id="CAN76794.1"
/translation="MYRRTSNLEVVGYLDSNFADCVDSCKSTSGYIFILANGAISWRS
VKQTLTVTXTMEAEFIACFEATSHGVWLKSFIFGLRVMDSISRSLSIYCDNSIAKVVI
EHISTELMIVDPLTKGMPPLKFKDHVVNMRLSSLI"
BASE COUNT 2250 a 1466 c 1100 g 2323 t
ORIGIN
1 tagtaagtta gttaatttta ctaactaaaa attaaagtaa aggtgcacat caatatagaa
61 gaaaacatca taataagtag tttgtaacaa ataaaaacta cagtaaggga actaagtccc
121 attgttcact acatgatcct tgaatttcaa tggtggcatg cccttagtca aaggatcaac
181 gatcatcaat tcagtgctaa tgtgctcaat aaccactttc ttttytttta acacgttctc
241 ttatggctag atacttaatg tcgatgtgct tgattcaact tccactttta ttgttcttyg
301 ccataaagac tgcaattgaa ttgtcgcaat atatactyaa tgrcctagat attgaatcca
361 taactctaaa gcccgraaat gaaactctta agccatacac catgtgaagt agcctcaaaa
421 caagytatga actcagcttc catagtagaa ktaacagtca aggtctrctt aacgctcctc
481 caagatatar cgccattggc caagataaaa atgtatccag atgttgattt acatgaatca
541 acacagycag caaagtttga atctaagtac ccaacaacct ctaaattgct tgtccgtctg
601 tacataagct tgtaatcttt ggttccttga agatacctca tcactttctt tgcagctttc
661 yaatggtcaa aaccygggtt actytgatat cgtcctaaca ttccaacaac aaatgcaatg
721 tcaggcctta tgcagacctr agcatacatc agacttccga ctgtagaagc atatggaatg
781 ttcttcattt gttccmtctc aagatcgttt ttygggcatt ggtccaaatt gaacctatca
841 cccttcacta tagggaaaac actaggtgaa caattcttca tccgaaatct ctctaaaact
901 ttattgatat aggtttcttg agacaactta agataccttg aaatctgtct ctatggatct
961 taatgccaat gacataagat gtctcaccca tatccttcat gtcgaaattt ttagaaagga
1021 attgtttcat ctcatgaagt aaacccttat cattggttgc aagtaagatg tcatccacgt
1081 ataaaacaag aaaacaaact ttactcccac taaccttaag gtatatgcat tgatccataa
1141 cattttctac aaaaccaaat gaagaaatta tgttatggaa ttttaaatac cattgacggg
1201 atgcttgttt taaaccgtat atggatttct taagcttaca aactaattgt tcgccatcac
1261 tagaggggaa tccttcaggt tgtttcatgt aaacctcctc ctctagctyt ccattaagaa
1321 atgttgtttt cacatccatt tgttgcaatt ccaaatcaaa gtgggctact aatgccaata
1381 taatgagyaa ggaatctttc ttagatacag gagaaaaggt ttctatgtaa tcgaktcctt
1441 ctttctgagt gaaccccttt gcaacaagtc tggccttgta tctctcaatg ttgcctaatg
1501 agtmtttctt tgtcttaaaa acccatttac aaccaatgrc ttttgtacca ttaggcaact
1561 caacaaggtc ccaaatatcg tttcacttca tggaactcat ctcgtccttc atggcattgt
1621 accacaattt tgattcttta caactcatgg cttgtgaaaa agattcagga tcattttcgg
1681 ctcttatatt gtagtcacat ttttgtagat acactacata atcattagga attgttgacc
1741 tcttaattcg agtagacctt cttaaggttg caccaatatc ttytaaggaa gtatgaggtt
1801 caacttgttg ttcaraagtg tcagrcaact cytgatcaac ttgatctact agaatgttgt
1861 caacagcttg tggaacttca atgattggtt gaacttcaac gattgttcgt tctacacccg
1921 attgtactcg aggrgtgtta tgaacaataa acaatctatc acttgaagtg gaaggttgag
1981 actctgtatg atcaatatca taarctatgt ttcygaattg attactcyca ctaaccaagt
2041 catattcaaa aaatttagca tttctcgatt ccacaatcct agtgctgtga gatggatagt
2101 aaaatytgta ccccttagac ttttcaacat atccaatgaa atacccacta atagtccttg
2161 ggtccagttt cttttcttgt ggattataaa ttctcacttc agacgagcat ccctaaacac
2221 gcatatgtag caaactcgrt ttccaacmtt tcaataactc aaatggcktc tttgggacaa
2281 ccttrgttgg aactcagttt aatatataca ttgttatctt aagtgcttca gtccacaaga
2341 atttaggaag ttttgagctg ctaagcatac tcctcaccat gtccaataaa gttcggtttc
2401 ttctttctgc tactccattt tggtctagag aaccaagcat ggtgtattgg gtaacaatcc
2461 catgctcttg aagaaacttc gcaaatggcc caagtgattg tccatcctcc aagtatctac
2521 cataatattc tccatctcta tctgacctca cgatcttaat ctctttacca cattgttttt
2581 ctacttctgc cttgaaaact ttaaaggctt ctaaaacttc atttttgtta tgaagtatgt
2641 agagatacat gtatcgtgag aaatcatcta tgaaagagat gaagtatttc taaccatgag
2701 agtccatgtc aagactacat atattagtat gtatgatctc tagtatggcg gaactcctag
2761 tagcacctct ctttgacttg ttggtctact ttcttttaat gcagtccaca caagtctcaa
2821 agttagtaaa atctagagta ctaagtaccc catcattcac caaccttctg attctatcta
2881 tggagatatg acctaatctc cgatgccaca atgtagagga atcctcatta acaacacatc
2941 ttttaatgcc agtttggaca tgtaatgaat tatgagtggt atcattttgt aagaatatgc
3001 aataaagacc atcagataaa ataccattgc caacacaatc agatttataa atcaaattga
3061 aagatgtttc taraaaaatg aaaggaatat ccaaacgrta caagtctaga aactgaaatc
3121 aagtttcgtg agaaacttgg tacataaaag gtcatttgca attccaaaat aaaaccacca
3181 tttaaggtta aataacatgt ccttattgct tccacatgcg agcccatctt gtttccrgat
3241 aaaatgaatt gctcacttgt cactggcttc cttargtttt gcatacccta caaggaattt
3301 gaaatgtgga ttgtagatcc agaatcaatc caccatgtgt tggtattcac attaaccata
3361 ttagattcat aacaaacaaa tgaggtaggg ttacctttct tctcaagtca tttatgaaat
3421 ttcagacatt tcttcttcat gtgtcctttc tttttacaga aaaaacaytt ttcgtctttc
3481 ttaatgtcar atttgggagg aatttgttgc ttcyctttyt wactggcttg agattttcct
3541 ttctttcctt tctttccttt cttttgcgtc acyagcatga cactttctcc ttgttccatc
3601 aataacctty cttcctcttg aacacacatg gtcatcaatt cattgataga ccacttatcc
3661 ttatgtgtgt tgtaagagak tttgaaaggt ycatattgag gcrgaagagt gttaaggata
3721 aagtgcacca agaaggattc agacatttct aycttgagct tcttcaattg agccactatg
3781 tccctcatct ycatgatgtg ttcgcgtaca cctcttatat cgatgagctt carggatgtg
3841 aacttcataa ttagggtgtt tgctaaarct ttatctgaag tgacgaattg ctcatcaata
3901 gccttgagca attcgcrgac attctyatgt tgctcgattg aaccacgtat accagcacta
3961 atttttgtct taatgtacat cacgytragg cgattagatt tctcccaacg ttcrtgtaat
4021 aaaatttcat ttggtgtgct ggtatcagtg atcttatgtg gttcatcttt ccttatagca
4081 tagtctatgt ccatgcaccc tagttgaaaa agaatctttt ccttycatat cttaaagttg
4141 tctcyyctga gttcgggaac ctcacaacaa atatcarata tgctaggtaa aactgcacaa
4201 aaaaattaca agcttattaa gaatttgagg ctttaattta aattcatgtt ttaccaatgt
4261 agaacrcgct taaaaattga atytaatttt attaaaaatt gactgtgggc taaatctttg
4321 attcaatcag attcattatc tttatgaaag actttatcaa actattttac taaattatat
4381 atttattatg aatatagttt aatattttct atgtataagt tttatgataa acctattaaa
4441 ttaattcttc ctaattccta tgggtaaatt agaaaaaatt ttttttaata ttttatccta
4501 attaattata taaacataat gaaatccttg tggggtaaaa tcgtcatatt tatataatta
4561 attgcaatta atgtccataa tgtgatcctt atttacttaa tatgtaattt tatataatta
4621 aggatgttgt ggctattcct taattattta aaattatatg gttcactaga cattaaaact
4681 atatgatata aatttaatat gtctaacaca aatttaggca gcaattgcat gcattaaaag
4741 ctacaacttt taatttatct aactcaaatt taagctacat ttttacacat acaaacatat
4801 aatttaaaat aaataattta atttgtatgt ataaaaaatc acatataatt tgaaaggact
4861 ttagattatg attgggcgcc taaatctata taaaacacaa tcaattccaa gcccaataaa
4921 aataattcaa accgggccaa aaagggccta aactgaccca attttaacaa tcatccaatg
4981 aaccaacact taaagcctca taatttagta aaatgggcca ctggcatgca ttgagcttaa
5041 tgagcccaat agcctcttat accaaggccc aaatttcaca tttaactcat ggcccaacac
5101 ttaataaaac ccactctctc tctaggtttt tttttatcat tttaatatca tttgcaacaa
5161 aaacccacaa tcctaattta ccgccacccc tatggactgc ttcatcactg gtagtgacgt
5221 gctcgccacc acctacatgg actgcaccct caccggctac agtccaagcc ataggagttg
5281 ctgcatcaca ctggtaggta aaacccttac cacacgcgat gcatccaagc gcgcaacatc
5341 accaacaaga acaacttcta ttctctccga ccagaacaag atggctaggt gcgatggcat
5401 caacatccac cactaatggg aygggctgca tccactggag tgcacccctc gattccccat
5461 tcccgcctct atgcgagctc cactaatttt ttttgggttt ttattgacct cgrccatttt
5521 ccgrcagcct gcaacarcgc ctcarcgacg cttcccacct gaacgagatg gwgcctgaat
5581 gcaccttaaa tggtgcttaa aaagcgcttg aacagcatcg ctggaatgcc tgaaaatggc
5641 gccttaacaa cgcttgaatg gcgcctgcaa cgccgtttag aacgacgctt gtactggcgc
5701 ttgaacaatg tcctttcttt ttttttttaa aggcctataa tggcattttc taaatgcctg
5761 aatgacgtct tttgaacgcc tgtaatgacg ttttctgaac gaaggatgcc aactatctgg
5821 atcgcctcca gcaaccattg tttaaatagt tatcgagaga tcataaaaac aagaaatttt
5881 catgcaaaat caatacaaag cagaggtaag atttaacttg ctctaatacc aaatgtaagt
5941 agtttacatg ctatatatgt gtgattccaa tgaacattta caacatgaat caaaactgaa
6001 aaagacttag aatagcctac ttacctccag ccattgtatc gagttactgt aatcggtttc
6061 aagctttgat ttccaaactc taatctctac ttttagatgg tgtatttctg aagataaaaa
6121 acagcagagc cgaatgcggg accatttcca atctatataa ttgtggcttc catcatacca
6181 cattgctctt gccaccatgt tgagcaattg gtggaagtgc tccttaatcg caatgaaagt
6241 gagaaatgga ggaggacgtg gtcaaagtgt tggaccacat tagaagtgct ggacatgtgt
6301 gaacgtgtat caactaacat tctcccactt ggtccacacc tttaacctaa tgtcctatct
6361 cagtccatca attatcccca ttaagtaaca aatacatgaa tcatgacgat aagtccccta
6421 tttaacgagg gttacattcc atgtattaca gtgtactcat ttcttaacat tatactttat
6481 gtggcaatat tacttactga ataaatccta tgttcattct ttgtccaatg aagttgaatt
6541 ttctcaaaat taaataaaag tgcacatcaa tatgagaaaa catcataata agagtttgta
6601 caatagaaac tatataaggg aactaagtct catgttcact acatgatcct tgaatttcaa
6661 tggtggcatg cccttagtca aaggatcaac gatcatcaat tcagtgctaa tgtgctcaat
6721 aaccactttc ttttttttta acacgttctc ttatggctag atacttaatg tcgatgtgct
6781 tgattcaact tccactttta ttgttctttg ccataaagac tgcaattgaa ttgtcgcaat
6841 atatactcaa tgacctagat attgaatcca taactctaag cccgaaaatg aaactcttaa
6901 gccatacacc atgtgaagta gcctcaaaac aagctatgaa ctcagcttcc atagtanaag
6961 taacagtcaa ggtctgctta acgctcctcc aagatatagc gccattggcc aagataaaaa
7021 tgtatccaga tgttgattta catgaatcaa cacagtcagc aaagtttgaa tctaagtacc
7081 caacaacctc taaattgctt gtccgtctgt acataagctt gtaatctttg gttccttgaa
7141 gatacctcat cactttcttt gcagctttcc aatggtcaaa acctgggtta ctctgatatc
7201 gtcctaaca
//