LOCUS AM455187 10210 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X221861.8, whole genome shotgun sequence.
ACCESSION AM455187
VERSION AM455187.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10210)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10210
/organism="Vitis vinifera"
/chromosome="8"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(3475..3511,5614..5711,6539..6710,6818..6875,
7303..7398,7552..7672,8662..8895,9130..9624)
/locus_tag="VITISV_037961"
/product="hypothetical protein"
/note="weakly similar to EMBL:AP008212"
/db_xref="UniProtKB/TrEMBL:A5BD81"
/inference="similar to DNA sequence:EMBL:AP008212"
/protein_id="CAN63360.1"
/translation="MRTMALCPQRDQGRRFFLEQQALEENLSGKRTEETKRAIATKAV
EGFESRLELLEQHEELRDTSDGLMGLVPILGRITDLGQRRLVMAMGLMQIREILFLRK
RLAITIRNRKKEIDATSSNNWSNGKKYILSSTIGERYIVHAMKHPAVFLDSSSSSGNX
QTQSITGYDRMAGMVIERLLASRDSLSSSGSLLLEQRMMQNRENNDPGPTGLMRFDGE
IRSAMLGSNWKYGPHATATHLDYMVEFTVTVPILSLAGTMDNLPVGEQWLQKLKVCTP
SLVGLLIWWIAPTEFSTSSYSQSFVNGSSETYSPLIRNGSVGSNNLAICNGGAAMYSQ
AMHNGDIDQDECSLRDLLGNGISPSAAEIISPLFSNIPDADTQLHSLSNAAENSRFDG
RLIISSNSDVKDDDSDDKDPFFVTSMPMKSMVICSRAWAYRTYN"
BASE COUNT 2887 a 1829 c 2038 g 3446 t
ORIGIN
1 ttcgttatgc aacattgatt cattatcaaa atagaagtga caaatggtgt cttgacatga
61 cacttgtgtt tgctttggtt tcaattactc gcattgaata gtattggcac atgcccccag
121 tttcttaagt agaccatgta atggaatagg atcaaatgac ccaaatgtga ctgtagcatg
181 atttggctct actacttcat ccagatccag atgaattctt ccttgttatg caagtttcat
241 tataagatct tttaagatga aacatttctc tatcaggtga ttgacaattc gatggtaatg
301 acaatagttc ggatcattaa cacgacccat ttcttctgga agcttgcact caggtagctc
361 aataaccttt ttctagagca agtcttccaa catagacaca tcagagttag gaaaatgata
421 cttcttcttc tctaattcct tcaaggtgaa ctgacacctc tcattttcct aggttggtct
481 agcctctttt acttctttct ttttatctag cgttgagatt ttgataggag tcctatttac
541 cgtcattgac tcctagatgg gttctattga attcttatca cttgctttcc cattgtgact
601 ttcactttgt tgatcaatga taaggtcctt tttagcacca tggttggcta tgctaagctc
661 catgtcatgt gttggagtag ctaattcttc aaaggtactg ggttgtatcc cttggaggat
721 gtatagaaga ccctaatgca ttccttgtat gcacatctcc attgctgata cctcagataa
781 tctatctttg cagttaaggc ttaaggaatg ctaacggttc atatagtcta caattggctc
841 gtctttccat tgcttagtgt tagtaagctc catcatgctt acagttcatc gagtgctaca
901 gaaayggttg aggaattcat gttccatttg gtctcaacta tcgatacaat caggtgcaag
961 gtctatgtac caataaaaag cattccctcg gagagaactg gcaaattgtt taactaataa
1021 gttaccatct gtacctgcat tgttacaagc ttcaacgaaa tgggcaacat gttgttttgg
1081 atttcttttc ccatcaaatg attgaaattt tggaggttga taacccatag gcatacgtag
1141 gttatcaatc ctcttagtgt aaggtttaga gtacatgagc atactctgtg agggtccacc
1201 atactatgct ctaatggtat tagttatcat gtcccgaagt tgttggacaa ataatgacac
1261 cactgaggca aatttcgtcg tttgtctctc aacttacatt gtcctataca catgtggtgc
1321 atcatcgaca tgagatgtaa catttggaag gtggttgagt ccttgacctg actcacccgt
1381 attttgtact tgtgcctcga ccttgtttat gagggaggct atttgcatat ccttatcctc
1441 gaccatcttg gtgagtttgg cgatggtgtg agccatctct gctaattgtt cctctacgga
1501 tgtagtgcca gttgtcatta ccggcatagt catcaagaag ggagaagtaa aagtgttgga
1561 acgattagag tagttttcct cctttgacat tcaaattggc gatccggagt gtgagccggt
1621 tgattcgtcc ccaattggtg ttcctttgat tcagtcctta gacgggagtt atcaacaaaa
1681 attataaacc taattcacca tatactaggg tagcataact agcatagcat agtggttcta
1741 gratcatcta cagggatggg ttttcatttc acacatgata ttagtttaaa gaattggatt
1801 gttgtttttt attttatggg ttagctttaa aagaaaacat aatctttggt tgaaaaaggt
1861 tagttttaag ctaaccaaaa aaatagtaac tgatactaat tataaagaaa aggtttcttg
1921 gattttcagg tcactaggtt caggcccctt atacaaaaga ggggattcta gatcttttcc
1981 tcacattggg gatttaagct atagttatcc tcccaactgg tgtgtcacag ctacttccca
2041 ttaatggttt caacactaaa tccctctcac taatgcatct tgcaaaggct cgtacctctc
2101 acctagcatt ttccattcaa ggtgatcctt aaccttggat tacccttcaa aagctcgcag
2161 gagataacta atggatgtct ccagggagtc caaaagctta ccaagtgttg cctattctaa
2221 gtaatcctac ctttaaacca cctcccagag gctcgcaaga gataactaat ggatctctat
2281 ggattgagtc cgaaaagctt accaagtgtt ggcccaggtg attataaggg attttaagtt
2341 aactaaaaat ataaaaacca ttaatgagtc acaaccttct cttcattaaa aactgaaaca
2401 aggaaaactc ttacctttgt atccaggtcc cttacctagc ttccttcaat ccaagaaaca
2461 aaaagcctac ccactcatcc ycgaggcctt cgaggatgtt tggctagaaa gaaatgaaaa
2521 caaaacttcg aaggaaaagc agagcaagtg ctctgtagat acatttctta ctatgatcct
2581 ccttcgtgga ttcgatttct ttacatgata tcagagatat atatatagaa gatattttct
2641 aagaaatatc cagagagata tttttaacct ccctttagat atcctaaata tcctaaaaat
2701 atctttagct gattacaagg agaaaatagg taattacaca aaatatcttg agaaaaaatc
2761 taattgagtc ggtgctcaaa tatctgaaga ttacatgaag atttcgcaag tcagatatgg
2821 agttgcaaaa atttcgcaag tggatttggc tggtgcgaaa ttttagtatt tggatttggc
2881 tattgcgaaa ttcattttca gcttggtgca gtcgtcttca aatggctata acttcttcat
2941 ttcagctttg atttgcacac tatttgaagc attggtctcc tgacttcccg agcttcaaaa
3001 taatatatag tatgtacaca atgaactcta ttaagtgctc taaatttgtc ttgcagctgt
3061 tgtccttttg aatttcgcgt agcatgtgaa gatttcgcaa tactttgcga aattgcttca
3121 tgttggattt ctctctctgt ttttcttttt tgcatctcta gattggcttg gaaacttatt
3181 gccaagggtt gtacaaaatt cttcctcatt cttggcttgc ttcgatgatc aaaaagctac
3241 caaaaatacc aaaactagcc aaaaattgat tagtaatact tgcaagggtc cttaatgtgc
3301 caattgagtt taaaaggtaa taactactac tcaaaagtgt ttaaaaaagt taatttcaat
3361 ctataaaagt gcactttttg agtagtaatc actggtgcta gagttgacat tggtaacaaa
3421 gcaaggagat ttattgccaa agtcctgtag tattgaaggg agttttcccc tgctatgagg
3481 actatggctc tttgccccca gagagaccaa ggtgatgagt ggttgatgct catcatgcat
3541 tcttaccagt tttagcaaac aagcagactc acttgcttgt tttgttgaga gtgaagatgt
3601 tgattttgct ttgctacgag tcatgaggcc cgtagtggcg tcatgtattg attgtgcaat
3661 gacgatcttg tcattgtcct tgttgacatg cacaacttga gttcttttag gttccatcga
3721 tgaagtggag gtcaatcttc taacaaaaga gatgagaggt agagatgtcc caccgggcat
3781 gccagaaatt tgtacgcaca aatcgtaaat tttggtcttg caaaattagc aaaacaaaat
3841 aggaaaataa tgccaacaaa atatttattg aaattaaaaa tattatgggt acaatctcaa
3901 tacatatata tattctttcc aaaagaatat tttttctctc tgattctttt gccttgatca
3961 cactttagaa tacgatgatg atgttttctt gatttcgaag atcaatcgag ggccacaagt
4021 ggcttattcc taaatgacct tgttgaattg cgaagaacgc atgtagcaat tcttttgtcg
4081 cttatcgaac ttgtaaggag atttgatgaa gctttttctt ttgttgtgaa gccccttttc
4141 ccgcacgaag ttacctttgg attttctcct taggattttt ctttctggaa ttttttttta
4201 tttttgaatt ttcttctctt ttttttattt tttattttat ggaagacacc tctatttata
4261 ggtgaagata gggaatttga attttaaatt accaaatttt aattacttaa ttcaagggat
4321 ttagttcctt gattttaaca aattttattc tccaggaagt tttaccaaca agatgaataa
4381 tatataacaa taataataat tttcttatta ttattattat tattatcctt tttattgtta
4441 gagattaggg aaactagctc tatctcatga gaggaccact tttttttttt caatttattg
4501 attttgaaga ccaaattagt ggtaatttaa tccaccaatt ctttttttat gtgtcctcta
4561 tagtcacaaa tgaatcattg cccatgtgtt tattctctca ttcctttttt taaaattctc
4621 ttatttgttg ttgttgttgt tcttcttctt cttcttggta gaaaagccta aagaaccttg
4681 acttccattt gtacaccctt ttactcttcg agaatcttct tacccatccc aaaggaatct
4741 agtaagatct ctaagataac ttgaatcctg gtgttcataa tagtcttaag ggcaacttgt
4801 ctagttgact ttcctttatc accaaataac ccttacaact ttaaagagaa tatcatagac
4861 tatgacaata gacatgtgtg tagaccctca attttgtccc tctagcacat gtctttaaaa
4921 ttcgttttca atgctccaca atagttcctt ggtggcctat agctactcat accacttacc
4981 ttttttttga gtcacctcgg agactttggt tgagggatta tttgatccct tattgtgacc
5041 cttggcagcc ctaatttaga cttaggcttt tcttgttttt ttttaggata gcttttagat
5101 acacttggcc ctttaggcac caccttaggc ccacttagtc tcaccttagg cccgtttagg
5161 tatactgggt ctattaagat ttttttttta gcgtgactta tatgacttgc gtgtttgcat
5221 ggctcgtagg gcccattttt ttgttaattt gtttattttt attttatttt attttatttt
5281 cctctttata ttattttcct taacttattt atttatttat tatttttact attttctaat
5341 ttatttactt atttatctat tcatgcaatt atttaacttc tcaaatttca tgtttttgca
5401 atgaaactta ctattggagt ttaaggaagg cgggactctc cttggaaggt ttgggagagg
5461 aatttgaaat tgtgaagatt gcttttgaat tggaagattt aaaaaaagga taaggagaaa
5521 agaagagaga aaatagggga ttttttcctt tcggaacaga tttaggattt aggaggtgat
5581 atatatatgt gagggagttt tttttttatt gagggaggag attctttttg gagcagcagg
5641 cattggagga aaatttgtcg gggaaaagaa cagaggaaac gaaaagagca attgcaacca
5701 aggctgtcga agtatgcacc tcgttgcttt tggaattctg acctatattt gattttttcc
5761 acgtgaatat ttaatggtat tgttgatttt gtgtggatga aaggggccac aatttgtttt
5821 gttgagattg gttgcttgct tgttttcctt gttttggttt tggatgtcat tgatgtcttc
5881 ggaagcatat aactccatgc ctgaatgtga tcatattctg ttcttcattt aaatcatatt
5941 ctgcatttgt ccctctgtta aagcccatgg attaatatct gaagtggggg ctatccatat
6001 ttactgatca acaccttctg ccatttcctt ctccaagttt tacttcaatt ttttttttat
6061 cttttatcta tattcttttc ctcgcatggt gttcgaaccc ttgctcttgt atttgggtat
6121 atgttgagga atgatgtaag tgtcaatatg agggatgaac tgtgcaacaa tcccactcaa
6181 aaataattga ttcygaggta ttgtaatgga ttgtggagac tggaggtaac gtcttattgg
6241 catcagattt ggcctttcta atcctatggg attcaatggc tcgtacagaa tcgcaactcc
6301 ggggttattt gcaagcatag ctaaatgggt taaagccaag ctaatatttt ctcttgcttc
6361 cgaatgatcg cgttatcatt ggccaacatc acttctaccc cttccaattt tccaagcgct
6421 tctgaccgta agaataatgg tctcagagaa agcaatttga cttgtaaaac agagggtttc
6481 ggagagtgtc aggaaggtga ttgatttggg tagcactgaa aaggatggtt tgaactaggg
6541 ttttgaatca cgccttgagt tattagagca gcacgaagaa ttgcgggata ccagtgatgg
6601 attgatgggt ttggtgccga ttctaggtcg tattactgat ttggggcaga gacgattggt
6661 gatggcaatg ggattaatgc aaatcaggga gatactattt ttgaggaaac gtagttcatg
6721 ggttttagga atgtagtttc agaatttcca gagattcttg atgtattgtg ttagaatatt
6781 ctgaaacagt ttcagtatac cgaaggatcc aatacaggct tagcaattac tataaggaac
6841 agaaagaagg aaattgatgc gacttcttcg aacaagtaag ttccaaatac ttcggttgga
6901 agaaccttct caataaggtg atcaatcaga ggaggtatct tgcatagtag acctttctga
6961 ttctttatgt tatcaacttg atcttgtctc ttttgtcgca tatgtcaatt ctgctcattt
7021 atggaattca aaatcctcat tgttgttgac tgaaagagaa attatggcaa ttggagaaga
7081 caatcagtct gacccttttt gttgaaaatt ttgttttgga aagattttct atttaaacct
7141 ccctgcgggt actattcgat gaagtccttg gcaataaatt tcaagatgct attgaattga
7201 taagtatgta gccagttgct tctaatttag cagcctggaa gaaaatgcga gttgttgaat
7261 tcatgcacat gcgatatgct ctggaatctg tggtgcttgc agttggagca atggaaagaa
7321 gtacatctta tcatctacta ttggtgagag atatattgtt catgcaatga agcaccctgc
7381 tgtcttctta gatagcaggt acattgacaa tggggataag gataagaaga cttatacgtc
7441 ttcttagaat atggaggatt cactcaatac aaaagtcact cttttcgtct ctggaattga
7501 gaaaccacat tttagaggat ggaattaaag tttttatacc ccaakttgca gtagcagttc
7561 tggtaatast caaactcaga gcatyacggg atatgacagg atggctggaa tggtgattga
7621 aaggctcctg gcgtccagag attccctaag tagcagtgga agtttactac tggtgtarcc
7681 atgattgaag ttacagcwcc atgtgtatat gctrtcaaaa gaagaaggat acgagactct
7741 gattttccat accactggaa tgggtggaag ggctatggag gatctgatca gaaggggatt
7801 tatacgatgt gttctggaca taacaacaac agaggttgct gattatgtag ttggaggtgt
7861 tatagcttgt gacaattccc accttgacgt catgaagata agaaatttgt cggctttgta
7921 gcaaacgaac taaacgaaac agcatcaaag gtaatgttga cccgaatgat taggctcata
7981 ttcagaaaga cagaatttga tccaaactca atttcctctg gttctgctac aaataaagaa
8041 gttgaatttc tggactacac aaggaccttt tagttctgat ttttcgttag gtgccaatct
8101 taccacaatg gaagatgtcc agaatagttt taatgcaacg caacttaggc tttgtggaag
8161 gttaagcaat gttgatggct atataatgcc gatcatcttc ccaagtgtta ttctatgtgg
8221 ctgagttgtt ttctgaagct gaaacataaa gaccctctca ataaggccgc ctctatgaat
8281 cttgctcagc atgcactgat cagcaatttc tggtgagatc tcagccagtt ccaattgata
8341 agcaggtgaa ccaggtagga aggaccaatt ggcaagcact cttgggcttt cctggtgggc
8401 atgaaaccca gaattgcaat ggggtagttc agaatctgaa tctagttcga cttggaggtc
8461 tgagtcagac attatataat tagaatggca aagaagactc cttacctaca gcggcccaaa
8521 tttattaagt cgtcctttga cactaaagag atcaccggtt tgcccttgat aaattaatgt
8581 catcatgagc agattttgtt cctattcttt agctgagaat caaatgcatc acaccatcgc
8641 acagttgaaa tctttgagta ggaacagaga atgatgcaga acagagaaaa caatgatcca
8701 ggtccaacag gtctcatgag gtttgatggt gagatccgtt cagcaatgtt gggaagcaac
8761 tggaaatatg ggcctcatgc tactgcaact cacttagact acatggttga gtttacagtc
8821 actgtgccaa ttttgagtct tgctggaaca atggataatt taccagttgg tgaacaatgg
8881 ctgcagaaac taaaagtgga ttgagcagga tgcaactact ctcattacca ggaaacacaa
8941 ttaacattaa atcgggtgat atcatccttg ttaatgctcg tcttattgag ggtgatccct
9001 ttaagattga tcaatctgct cttactgggg aaatctctcc ctatcacaaa gaatccttca
9061 gctgaagtat tttttttttt agttcaactt ataaataggg tgaaattgat gcagttgcaa
9121 tcatgacagg tgtgcacgcc ttctttggta gggctgctca tttggtggat agcaccaact
9181 gaattcagca ctagctccta cagtcaatcc tttgttaatg gcagttctga aacctacagt
9241 ccgctcatca gaaatgggag tgttggctcc aacaatctgg ccatttgcaa tggaggcgct
9301 gcgatgtata gtcaggccat gcacaatggt gatattgatc aggatgaatg ttctctaagg
9361 gaccttttgg gaaatggaat atcgccttca gctgccgaga taatttctcc tctctttagt
9421 aatattccag acgccgatac acaactccat agcctttcaa atgcagcaga aaacagtagg
9481 tttgatggaa ggctgatcat atcaagcaat tcagatgtta aggatgatga ttctgatgac
9541 aaggatcctt tttttgtaac ttctatgcct atgaaatcta tggtaatttg cagcagagca
9601 tgggcatacc ggacttataa ctgagactgg tgcaagccac acttcatggg cagtttcgac
9661 aagactttgg aattgaagaa gccattctct caaatcccaa aaatcttttg tgaattaggt
9721 tgctcttcca agttcctcga gccaaatttc ccacctgatg ctagaatttc tggaagcatg
9781 gaaagtgttg gtttaattga aatgagcaac ctgatatttc ctcttatgaa ttaggatagg
9841 ctccagagtc ttttacaatg gacgaatctg ttttgagttt gagacttaca taggccatct
9901 tgtgttcatc tggctttcta taaaagcatt aaaaggcatt cctctgacca gattgtgaat
9961 tatatcgcgg ttgatgctta tagaacaggg gaatttcttt ggtggttcaa ttcagcatgg
10021 agttacatct tgcaactttt tctatccatt ggagtctttt tttggggttg tgggatttgg
10081 agctctttca ggcttagtct ctcttttcat ttgtggattt cttaatgtgc cacatgcaaa
10141 gatactagaa aacctatcaa accgaactca tgatggctct caacatccac aagaagaatg
10201 gcacacttgc
//