LOCUS AM455065 11183 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X178652.7, whole genome shotgun sequence.
ACCESSION AM455065
VERSION AM455065.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 11183)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..11183
/organism="Vitis vinifera"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(674..813,1901..>2045))
/locus_tag="VITISV_032549"
/product="hypothetical protein"
/note="GO:0003676 GO:0003677 GO:0008270 GO:0016787
GO:0015074"
/note="weakly similar to EMBL:AP008214"
/db_xref="UniProtKB/TrEMBL:A5BD35"
/inference="similar to DNA sequence:EMBL:AP008214"
/protein_id="CAN63352.1"
/translation="IANYTHGGSTMPWYPDTXXNYHITPDLANLSIAHDYNGHDXLHV
SXGQXSQAPKDSSNFPWLHIKIVPPSSTSSVGNSGQTSTPSNIHYKKIDF"
CDS join(8301..8334,8440..8573,9207..9521)
/locus_tag="VITISV_032550"
/product="hypothetical protein"
/note="GO:0003677 GO:0003676 GO:0008270 GO:0015074"
/db_xref="InterPro:IPR013103"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5BD36"
/protein_id="CAN63353.1"
/translation="MEAKYSTLVRNAKLVAKGFQQHASVDFSDTFGPIVKAPTIQIFF
TLVVAYNWDIQQAPTQHHWSACKRLLRYVSGTHTLGLYFRPTARFTLEGFSDADWACN
VDDRRSTTGYCVFLGGNLVTWSSCKQQVVARSRTESEYWALASVTMELIWIKSLLDEL
"
BASE COUNT 3556 a 1807 c 1807 g 3629 t
ORIGIN
1 ttgtcaatat gacttgaatc taataccctt catgatttga gttgagtata attgagcctc
61 aagtcaaatt catgtcgact atggagagtg accttaaata atataagatc ccaattctga
121 tcaccaawtg gttttcagaa caaatgggag tcttgtcata aaatactctg tggttaagcg
181 tgctgcagtc aaagaaatct taggatgagt gacccactgg gaagtacaga gcacctcgat
241 ctacaagtgg tatcagagct tggtcacatg tttgacaagt gagctagcat tgtgggtgaa
301 tggcgaaggc ctagggcgtg gccaagacaa ctaacaaaga cggtagacta tcaccgacga
361 aattaatttg ttaccaaaaa tatttggcaa taaaaataaa attcgtcggc attaaatatt
421 gacgactttt gggacaaatt ttattttttt cgtgacaaaa attcttactt ttgtcaatga
481 aatatttcgt tggaaaacac cttcagtgac aaaattttat ttcatcaagg aaaactttgg
541 gcgacgaaat aagatttttg tcacgaaact tttaacgacg ggtctagggt gacgaacaag
601 gcacgaaaga attttcgttg gggaatgttt tttaagacga aatttagact ttcagtgaca
661 aaatattttg tcgctaaaag tcaattttct tgtagtgaat attagaggga gtagaggtct
721 gacctgaatt tccaacagaa ctcgtggatg atggaggtac aattttaatg tgaagccacg
781 ggaaatttga agagtccttt ggagcttgag atgctgcaat atgagaacaa tacaaaaaga
841 ggctaggatt aaaaacaaca tgcctagcaa tataggccct atcatttgat aaattaagac
901 aacgctaccc gagtgagagg gacttggaca caaggagtgc acctaaaagg cttttaagta
961 gaataatcgg gatgtttatg aaataaaaca aagtatgtgg aagaattatt aagaactgga
1021 gtgggcaaat tattaataga agaataactc atttcaaatg cataattcca ataccgtagt
1081 ggtaaattag catgagcaag aagtgaaaga ctagaatcaa caagatggcg aattttccgt
1141 tctgcgacac cgttttgttc atgagtatga ggacatgcaa gtctgtgaac aatgctgact
1201 tgtttaaaat aggtgtttag ttttcggtat tcccctccta attcgaatgg aatgccaaaa
1261 ttttctgatt aaattgacga tgaatgaatt gctcaaattg aagaaagaca gaataaacat
1321 tacttttata tttaatcaaa taaacccatg tgtaacggga ataatcatca acgaaaaata
1381 agagcatagc aatggccaag actggacaac aaaggagcag ggccccaaaa atcagagtaa
1441 ataagctgaa aaagagcagt acttttatgt tgaactgatc ctaaagatag tctagtatgt
1501 tttcccaaaa tgcaagaaga acaaagagaa ctagaattac tggaacaagg taaatgaaat
1561 tgcttgatta aactagacat gatacgctgt tgaggatgtc ctaaagcagc atgccattcg
1621 tccatggttg gtgctttagc tgtaaatgct tgcttgacat tagggcaaaa attgtacact
1681 ccatcttcac ttgggcccta caggaggatt ttcttggaca cctgatcctt gacaagaaaa
1741 taagagggcy aaaattcaaa gaagmaggaa ttatcagtrg yaaatttttg aaccaaaagt
1801 aagtttttga caatttgagg aacatagaga acatttttta aagagagaga acyagaagat
1861 gaaggaaggg atgtgatacc agtatgagtt atttgcaaac sttgtccmtt actaacatgg
1921 agctrgtcat gtccgttata gtcatgagca atgctgagat tggctaaatc aggggtratg
1981 tgatagttyg ytrctgtgtc aggataccat ggcatagtgg aacctccatg agtgtagttg
2041 gcwataggaa cttgagaact tgcacaatta ttttgagaat gaccagtcaa agagtaatta
2101 gcatgwggag ttrcattttg gttgtgagag ttgtaacgag aatatcaaca acgacaacga
2161 tcarcgrtat ggtttctata gccacagatt tggcaaggat cacagggttg atttccattc
2221 cagtttgaag atttcttgtg attattattt tgagatggag tgggaagcaa tgaagtagaa
2281 ttaaactgac aagtcaccat gtttgcttga ggaagatcag taragctcct aagtaaaatt
2341 tcatgagcaa taagttgacc atggagtkca tgaaatgaca ytggttcaga atgaagattt
2401 aaggyaatga taatggcatg atagtcactg ccaatattat gawaaattat tgcattaaat
2461 tttgytgggg caagaggacr acctgccgca tttagctcat cagctagagc tttagcacgt
2521 tgcaaatatg ctaagacaga gagattgttt ttcttcaatt cttggagtty aatgtgcaat
2581 tgcagttgtc ggttttsaga aactgaacca aaagcttgag agagagccta ccatacttca
2641 taagatgaag ataaccyaat aacataagga aatatctctt ctgaaagaga agaaaagatc
2701 caggaatgaa gcatyygatc ctttttatac catgtttyat attctggatt tggaatctca
2761 acaggaggag tagaagaatc tttaattgtt ttykatggag caacagttga accatcaata
2821 aacccagtca gattttggta attaagaaga ggattaaatt gagttttcca agcaagataa
2881 tttcttggag taagcttgac agagaaggta tgatgagtag aagaagagat tgaatttgaa
2941 gggatcattt gagaagaagt catgattgat cagaaaatta gaatgagggc tctratacca
3001 tgtaaagata atatgaraat gaatgtttgt attatattgt tgtgttaata atgaatacaa
3061 gagcarcttt atatagctra attayagagt ttgaaatagy ataaawtcag ctaactactt
3121 acatgattaa aggatgatag ttacaacaat aagatagata caaataaaac aaactatatc
3181 tggttrttrc tctaacatta aaaartgttt tgtattttta tttaaaaata aaaattaggt
3241 taaaaaatat gttaggatag tgtttttcta yttttatttt ctagaaaatt gagttaaaaa
3301 aagaaaaaga aaaaaaagaa acatcaaaat ttgtctcata acacatatgt gtattatata
3361 aaattttgaa ttatatttct tttcatcatt acttacatta gcaaaagtta tatccaaaca
3421 tattttacaa atttcatttt ctaaaaatta ttttcattta tttttaaatc atccgaattt
3481 ttaagaaaat aaaaataaat aaataaatct gttttcacaa aaatataaaa tataaaatga
3541 aaactaaaaa aaaaaaaacw ttttttwwaw rwramacama amwstkwtat yttytytwwa
3601 rakawwmtyk yscyytttww wwwwawawmm cccaaaattt aaaagtgaaa acacaccttc
3661 actcwmwryr yatmtaaaaa aacwakakwt wwwrymwmwa wwakwgttyy ymyawrwswm
3721 aarrrkawrr ssmsagrrkr wrwrwkayam mwmtmwyaya mrwgtrmrmr rrrswyywmw
3781 wtkkkstcty ktrkarwwyy myayrywkkk kkwraaaaaa aaaarrkktt wtwktgtgyr
3841 yayrmgrsrt cymmaaaaaw tkysttttwt rtktkwaamw tttttktawa wwtytywwwr
3901 wkwtttaaaa aaaawawmks kckmkaraww wtaytcwtaw atttwtwkwr aaaawttytt
3961 watakwrwaa aarmkayway ttwtayttyw mawawmttww rratatatwt kkttttktgw
4021 rrakwttwwa ragwrwwwtt tkkrawwtty tcttywmrar watwtttwat awrakawatw
4081 tkwgarwakt kttkyrmaat tttktrtakw kwcayrtrts yyswaawwwg trtwkwrraa
4141 aawaaaaaww kaaattttkt syaymttyca aatwwwtctc aattttgtca tttgtttatt
4201 atatgtgttt attctgytaa gttgaaatat ccataaaatt ggttgtaata tcaataaaac
4261 taggcgtcaa tttgaaatta atatgtaaaa aaaatcatta agtatttaaa tacaaatcaa
4321 ataataacaa aactaatagt taaaataaaa taaaattaat cttcaattat tttatcattg
4381 aatttattat taatatcaat ttaaattaat tgagactaca agcaattgaa taatctccta
4441 tttattaaat agaaatttca agatggtagc aaaatgatck ctctcacttt tttctttaca
4501 attaatcaat ttacctctga ataaaatact aaaaaatagt caaaatatat tmggtgtgtt
4561 gaaaaaaaga agaagaagaa attgaaagtt aagaggagat ttataacaat atttaagata
4621 atcatctata ctagaaatca aatgataatg cacaagtttt catatcctaa caaacttttg
4681 taataaactt cattattcat aacactyctt taataatcat aagaatatgt catattcaaa
4741 ctttattagg aaaaccctra tgagaaaacc cttgtaaagg ataaagaatg cratattcct
4801 taaatgattt gatcattara attgcattgt taaaaacatt gttagtaaac ccctatggga
4861 caaaagctag atgaaggaaa aaagagtatg ctatatcaat atcaatatca atatcaatat
4921 tctccctctc wtgtagacaa gattatgttt ttttcattac ttcaattgta aatctcttaa
4981 tcaccatatt ycaatgttgt attttaattc caatgtagtt gaaacacttt tgtgaataga
5041 tttgctaaat tatcacatga ctaaatcttc tttaattcat ataatgcaaa tagaaatatc
5101 ttcgtgtaac ttagtcaaat tattttttta tggaggatag tccacatgac ttctcaaata
5161 tgttggatca ctaatcttag ccatatatat atatatatat atatatattt atgacttact
5221 tcatgaattg tgagtatatt tgaatgattt gaagagatga ctatcattat ccacttaatt
5281 aatctccatg atatctttgt atcaccatag gtaaaggctt atcccatttg agatcaagtt
5341 tgatggggat ttgaaagata gtcaacatcc acatatcaaa taaactaata ttctwatcmt
5401 ttcgaagaaa ataaactcat gtcagttgtt caattataaa gatatcataa tacatgtttg
5461 atctcattcc attatcttca agttaatgca aaattrtatc ttgcttgcaa tttgatagag
5521 rattttatat ttaatcatgc atgattttta agtatatatc tccattaatc acattgagat
5581 atgatacttt tggaccaagt awttcttcat tttttttctt tgagatgaaa cctatatttg
5641 tttacttaaa gtgaataaat gaccatarag ragttagaca ggtytgattt atccatatga
5701 aagcactttc aaggctttct ccgtatatgt caactagtag attaacaagc cacttaaaat
5761 acttgatttg caagtcagga caaaattttg gttttccaag atctttcatt caaaattcta
5821 ttgttagata accattcttt tgaaactgtt taaggagttc caataacatt gaaacaataa
5881 aaaaacttcc cttttaattg ttttctttcc ttaataatta taaatatttt ttttgttgtt
5941 aagactatat tagtgcaatt gatgacacct atattagtgc atgaattcta gctttccaac
6001 taacaaacaa tagtttcaag ggtgaaaaaa cagttataac acaaaatgtt atatgcacat
6061 gtgattttga catgatattc actttttttt ttatgctagt tggaaagaaa caacgaatga
6121 tgttcatacc tcgcgaacca cgaggtcgtc cgcgataatt gccattgcct ctgttataac
6181 tagagttgaa ggagttctcc tcggtagcat agtgagcact agtgccatta acatccacat
6241 gtgtagtaga ttcacaactt taaattctct gttcatgatt ttgtaacatg aacataacac
6301 gttgaagtgt tatatgatat ttagaggtta tattcaccac aacagaatca tattctagac
6361 caagactaga taaaatgtaa agaataacct catcgtcaga tattggttta ccaacaacaa
6421 ttaaacaatc tgctaatgta tgtttttttt aaggcatatt catcaacagg tgtaacacct
6481 ttcttaagtt gtaattgttg acacaactga agaattcttg ccttagattg aattccaaat
6541 acctcatgaa gtgtgctcca aatctctgat gtggaagtac accgtataac atgtccaagc
6601 attgcctcag aaatggatcc aataaaccag ctaacaagaa attgatccta atgagtctag
6661 tagaggaaat caagattttc aacaaacact tgaggatcct ttgcatcagc taccatggca
6721 ggtggacgaa catgatcacc agttaaaaat ccttcaagac tatacgctta gactgtagga
6781 agaatctgtg actaatatga agtttagaac cattaccaat aaccaatttc tctttgtcat
6841 tgtaattatt cttgttggcc aaattagagc tgtcagttgt aatatgatgt gtagctccac
6901 cgtctagaaa ccaagaattg ttgtttggat caccaatatt tgatgatgag gttattctat
6961 gtcaatctta ctatattctc atcagatgtt ttgtgatgct tgtaaactag gcaaaattca
7021 tcagaatctt ttctttctat tgccgtcaaa actaataaac ctcttcaatt gatacactca
7081 gatgtgtggt gtccttctcc taatattctc attgaaggtt atcgatttta cttattgttt
7141 atagatgatt ttagtcattt ttgttagaca tatcctatga aacacaagtc taaggtactt
7201 tctatatttc ttaaattcca agtttttgtt gaaaaacaac tttcttctaa gattttagcc
7261 ttgcaaacag attggggagg ggaatttcgg cccttattac ctattcttga aaattttggt
7321 attctttttc gacactcttg tccctacacc catcaacaac aaggaagagt tgggcaaaag
7381 catcgtcaca tcattgatct tagcctcaca tctcttgcct aagctgttat gcccttgaca
7441 ttttggtggg atgcctgtgt gtcttctatt ttcatcaaca atcgattacc tacaaaaatt
7501 ctagccaatt tccaatctcc ttttgaattt tttttttggt tctaaacctg attactcatt
7561 tttcaaagtt tttagttgtt ctttttatcc ttacttacgt ccttacaatt ctcacaagtt
7621 ttctttcaag tccaccaagt gtcttttttc ttggttatag ccctactcat aaagggtata
7681 gatgtcttag tccttttggt cgaatttatg ttgctaagtc agtcacattc aatgaaaatg
7741 actttcctta ctctacgctg tttactcaac ccaatactcc acatcagtct tttatccaca
7801 agtttagttg tccatcatat gtgttgcctt attatcctcc ggtttctcca ccttctactc
7861 atttacctac ttcatcttct caactcccat atttcttctt ttgctaatat gtctaatact
7921 tttactgcag ttgttaccga tactccaatg gctcttaccc tgcttgtctc taatgcttta
7981 tctgacaata cgtgctctct agtttttcta attctatgac aggttctgct tcattgccct
8041 cctgtcctgc tactagcact acagttccta ttgttgataa catagtttcc acaacttgca
8101 cgcatgttgt tcaatctatt actactacta tgtctcaacc tctcctccac acttctacca
8161 atattcattc tatgcagaca aggtttaaaa gtggcatcta caaacctaag gtttacatag
8221 ctgttgttgc tttgctagat cacttccaag agccctttag tgttcgacaa gctttacaat
8281 tacctcactg gaaaacaaca atggaggcta aatattctac ccttgttcgc aatggtactt
8341 ggcagttagt tcctaaaact gaaggaatgc atattgtcta gaacaaatgg atttttaaaa
8401 ccaagttgaa ggttgatggt tctttggata aattcaaagc caaattggtt gctaaggggt
8461 ttcaacaaca tgctagtgta gatttctcag acacatttgg tccaattgtc aaagctccta
8521 ctattcagat attttttact cttgttgtcg cttacaattg ggacatacag caggtcaata
8581 tcaataattc ctttctaaat ggcattcttc atgaagatgt ccatatgtgt caacttgaag
8641 ggtttgttag ttctactcat cctactcatg tctacaagtt gattaagtca ctctatgggc
8701 ttaaacaagc tccttgagct tggtttgttc agcttcacag tgctctagtc tcatggggat
8761 tttagctttc tatttatgat aatttcttat ttcactctca gaagaatggt catttggttt
8821 tggtattagt atatgttgat gatatcctaa taactagcga tagttatgca ctcattcatt
8881 ctatgattca ggctctcact tctcggtttg ctttgaagac tcttggttat attagttact
8941 ttcttggatt tgaagcattt agagatagct ccaatctcta tctcaattaa gccaaatata
9001 tttctgattt acttgtcaag aaaaacatgg ttcatgctaa accatcatct acaccaatgg
9061 ctcttggtca gaaacttgct cttgaagaca atgcttcttt tcctgatgtc accttgtatc
9121 gcagcaccat cagtgatctc taatacttaa ctttaactcg gcctgacata tctttcttga
9181 ttaataagtt gagctaattt cttaaggctc ctacacaaca tcattggagt gcttgtaaac
9241 gtctcttgcg ctatgttagt ggtacccaca ctcttggttt atatttccgg cctactgctc
9301 gatttacact tgaaggcttc tcggatgcgg attgggcgtg taatgttgat gacagaagat
9361 ctacaaccgg ttattgtgtt tttcttggtg gaaatttagt aacttggagt tcttgcaaac
9421 aacaggttgt tgcaaggtcc aggactgaat ccgagtattg ggcgttggct agtgttacta
9481 tggaattaat ttggataaaa tctttactgg atgaacttta acttccatta cagcatcgtc
9541 ccatagcttg gtgtgataac ctaggtgcgc atgctcttgc ccacaatcct atttatcatt
9601 cacgcactaa agatattgag gtggatgtcc atttcatttg agaaaagatt ctccatcgtg
9661 ctcttgaagt tcgctatata ccctctcaag aataaccgac agacttgttt actaagtctt
9721 tgtctctttc tcagttttag tttctatgtt ccaaactttc actttcctat ccgtcgttca
9781 acttgtggat agatgtttaa caacaaaact agttgtacca gtttttgtta ttagttggtt
9841 gttaagctga ttagtttggt tgttagttat attgttatcc tttgtatatt atatatacca
9901 ttcataatga atagaaagat atctcttcag ctcaaatata caaagctggt attctgttaa
9961 gtcatgcaaa caaatgctgg gaatttttag taattatttg aatgaagaag aaacttgttc
10021 aacattcact tgggatcgag gagagttgaa acagaggtta actaacatct aagtcatgca
10081 ctagtttacc attgatgtca tcagatgaaa cttcacaatt ttataggcaa aagaatttaa
10141 atggtagtaa tgagacggaa ggcattgttg gttggaagct ttcaagcagt tcatgaacac
10201 ctcaccttgc cctagtctct caagccccat ttctgtctct tcacacccta ccccacgcca
10261 aacccattac attcagctca taaccttaac cttgataccc accataccca tcaccatgct
10321 caccaccatc agttcattcc ccatttccat actcactaat ccctcctcac ggcccctctc
10381 aagcttataa cccatcatac ttcctccaag atcctcattt tcctttctcc ccatgacatg
10441 ctcttcggat aacgaccatc aatcaaccaa aatagccttc tgggtgacct cacccattca
10501 cgtaccctca ttcgacatct attgtgtttg aattctttag tccactactc acgcccatag
10561 gcaaaaatgc tatgtttcaa aacttgaaga cggattgtta attaacatga gtatgtttct
10621 cgcgtctgga aaggactatg tggtttggaa ccatgggaat gctggaaatt tcatccatct
10681 acatgtgaag tagactagtt tttgaagata ggttcgtgca gaaacctaca ccttgggttg
10741 catgttttga ccttattgaa actatggaga ttttgatgaa aatgctagtc ctaaaaatga
10801 agttcatgtg catgaaatat ctaacagcta tgggggtttg catagggtat tgtgccaaag
10861 gttggtgggc agtgagaaaa ggtccttgat attctaattg agtagtcggg aaggaacaag
10921 tctggagtag atgcatggag gatgctaagg aagccataat ggatacacga aggaacaagt
10981 ctagagtaga tgcatggagg atgctaagga agctataatg gatacacgaa gatggttcct
11041 caactacatg agcccactcc tacatggcca tgcatggcca ccctcagtga actactccaa
11101 agggccaagt gtcgatcatt ttgattcatt ttttaatgtt aatttttttt ttaaatttca
11161 ttctckaata ttttttttta att
//