LOCUS AM454837 10549 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X015970.7, whole genome shotgun sequence.
ACCESSION AM454837
VERSION AM454837.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10549)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10549
/organism="Vitis vinifera"
/chromosome="7"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS 6382..6786
/locus_tag="VITISV_029640"
/product="hypothetical protein"
/note="weakly similar to EMBL:AP008209"
/db_xref="UniProtKB/TrEMBL:A5BCU3"
/inference="similar to DNA sequence:EMBL:AP008209"
/experiment="confirmed by EST"
/protein_id="CAN76721.1"
/translation="MKANPTPKKRSISLQYDIVSTLSEANRLVSSQKKLRRLPHIFTR
VLELPFRSDADVSVTETPEPPPVRRHHRRRGRRCPNPDNPTPPWRHEGGDQRQELSGF
VPGRTGGGARSRFVAVPAPGVDVARDGERRLQ"
CDS join(8131..8457,8559..8849,8961..9122)
/locus_tag="VITISV_029641"
/product="hypothetical protein"
/note="highly similar to EMBL:AP000731"
/db_xref="InterPro:IPR007011"
/db_xref="UniProtKB/TrEMBL:A5BCU4"
/inference="similar to DNA sequence:EMBL:AP000731"
/protein_id="CAN76722.1"
/translation="MSQQQRPRPTQPTTEPIKYSDVFPVSGSLASKPIAPQDAATMQS
AENTVLGNTQKGGPAAVMNSAATKNERAGLVSHEQVTDVVATDGVTISQANVAGSRII
TEAVGDQVVGEYARPPPVAMTSPASALDRDAITIGEALQATALSAGNKPVDQSDAAAI
QVAEMRATGSSEVVPGGIAAQAQSAATTNARVILDENKTKLSDILTDATAKLPDDKPA
TREDAERVIGAELRNDPNMVTYPGGVAESVAAAARLNQSTK"
BASE COUNT 3207 a 2193 c 1854 g 3225 t
ORIGIN
1 taacctgttc attaaatatc acatttctac ttctgatgat tttcctgttt tgttcatccc
61 aaaacctata gccaaatttc tcatcaccat agccaatgaa aaaacatatt tttgactttg
121 catcaagttt actacgagca tcagaatcaa tatgaacata agaaacacaa ccaaaaactt
181 ttaaatgtga aaacttcacc tctttaccgc tccaaacctc ctcaggaagt ctaaactcca
241 tgggaactga tggtcctcgg tttatcaggt aagctgcagt gctaacagca tcagcccaaa
301 aagtttttgg tagttcagca tgcaacctca tacttctagc acgctcattg agagttctgt
361 tcatgcgctc agccacacca ttctgctgtg gtgtcccagt aatggtcttc tccatcctaa
421 ttccttgtgc agcacaatac tcactgaatc ctccatctat gtactctcct ccattatctg
481 acctcaaaca ttttactttc aaacctgttt ctgtctcaac catggtcttc cacttcttaa
541 aagttacaaa tacatcagat ttatttttca gaaaataaac ccataccttt ctacttgagt
601 catcaataaa ggtgatgtag taccttgaac ctcctaggga tgcaaccgga gaaggccccc
661 acaaatcagt gtgtactagt tccaattttt cagccttcgg tgtcctgcca gttttcaaga
721 agctcacctt tttttgcttt cctaagatgc aactttcaca catgtcaaaa tcaatggact
781 tcaattctgg tagttttcct tttgacaaca acatcttcat ccctttctca ctcatgtgac
841 caagtctgcg gtgccatagg cttgtatcag tacttgcatc agcaactgca attgtgtctc
901 ttggacatga ggtcatatac agagtgccag tcttctttcc acgaaccaat accctagctc
961 cctttgtaac cttccaagta ccaccaacaa atagtattgc atgtccttca tcatcaagtt
1021 gtccaacaga aatcagattc cttctcaggt caggaatatg tcgaaccttc tccagtaacc
1081 aaacagaccc attgggcaac gatatccggg catctcccag acccacaaca tccaaggctg
1141 aaccatcagc caaatacacc ttactaaaat cacctgcaac ataattctgt atgattcctc
1201 ggtgtgaagt ggtatgaaac gaagctcctg aatccaaaac ccaatcatca agtgractgt
1261 ctactgcaag aagtaatgca tcatgtacct cttctgttac agcattagca gaatcatctt
1321 cattcttctt cttagggctt ttgcattgcc ttttaaagtg acctgttttc ccacaattcc
1381 agcattgtac ttgttggcct gatctagatt tgcttctgtt ccgattagaa tttctggaat
1441 ttgatctacc ttgatttgaa tttctgttat tacctctacc tctacctctt gtctcaaggt
1501 ttagggcaga accagatcct gaggtttcac ctgcatcttt ttggcgaatc tcctcaacca
1561 gaattaaatc tcgtatatca ttgtacttga gcttttcctt tccagtagaa ttgcttactg
1621 ccatcctcat tgcctcccaa ctatttggca aagaagccaa gacgatcaga gcacgaatct
1681 catcatcaaa atcaatttct acagacgaca attgatttgt gattgtatta aattcattca
1741 gatgttgtgc tactgatgca ttctctgcca tcttcaaatt gaacaatttc ttcatcagat
1801 gcaccttatt gtttgcggac ggcttttcat acataccgga caaagccttc atcagatcta
1861 ctgtggtctt ctcctttaca acattgtgtg caacagacct agacagagtt aacctaataa
1921 ctcctagaac ctgtctgtca agaaacgccc attcctcagc cttcatactc tcaggttttg
1981 tccccaaaag aggcagatgc aatttcctcc catagagata atcttcaatc tgcatcctcc
2041 aatacgtaaa gtctatgcca tcaaactttt ctattccaga cgcctttcct gcttcctctg
2101 ccattgctcc cactcaaacc taaccctagg ctctgatacc agttgtaggg aattaaaccg
2161 aattcccaac ccgtgagaaa caaaaaaatt agagaaaaca cacgccaaag aaaaacaatc
2221 acacacacaa gacagtattt acgtggttcg gcaatttgcc tacgtccacg gagttgcagg
2281 gatatcacta ttatcaggga agaatacaga gtacaaccta gcggctacaa tattctctat
2341 atatatatag cacggcaacc ctaccatact aaaaaaccct aattacaaag ggtggttcca
2401 caatgggcta aacgagccca acaggcctca ataaatctcc cattaaaaaa gccatgcaat
2461 attattcggg tcgggtcgtc aaaccggatc aaacaaaact aggctccaca aagcccaaca
2521 gtttcgaccg tcaacttcaa ctgagacttc attatttaac taaaatctca attaataatt
2581 atgattttat ttttgaacta aaattaattg aaacttcatt ttttgtagaa ggatgatgtg
2641 acactcaccg gttgaatata agttttaaaa aaggccaaaa ggaacatttt tatagtcaaa
2701 gggccatttt cagtcctaaa ttcatgaaaa taaattattt ttagttttta atcttttaat
2761 aaaatatttt gagtagtaat aaaaatttgg aaaaatattt taaacttttt tacgcgatgg
2821 acatgtaaag tagcttcatt gaaagtgaga tgaggaaagt cttattgata tgcaagtttt
2881 caaatagaat tttattataa caaataatta aaacattttt taaaagcgct tttaaaaagc
2941 ttttttttaa taagtaatgt ccaaaggttt gtttagaaag cctttatttg cttcaatcca
3001 ttataatgtg ttgattcatc caatgcaatt aaatgccact ttatttttta cctaccattg
3061 taggtagcaa agaagacatg gtgctttccc tttgaaaatg ggcctttagt attattattt
3121 ttggcccaac cttggtggtt tccatatcaa agaacttgtc aaaaaaaggg gaggaccata
3181 cattattata ataataawaw aaaawaaaaa atgggaagaa aaaaaatggg cccatatacc
3241 tgagtgatgt acccttgcac taataacaat tcaatgttga atcatcatag ccaaatgctc
3301 gaatagactc gatccattaa agctttatgc acttggaaga gcacctctaa ccccttatga
3361 cgtcacgtgg agtggataaa ttaggtaata agcatcaccc cacaaagtca ttaagatttg
3421 aaatcaaatg ggacaacrat taatggaasa acgtgagggt caattcatgg atgcttgatc
3481 aaaagacctt gtggagaagt caagacattg tattgcttca atacaatcat ttgcctcact
3541 tgcattaagt actcagggag atcactcatt ttattaaact tgttaaattt ggggatggct
3601 atgccatgaa atgcctctgg ttgagtttct ttggtatggt aaatcaaggt atttctttcc
3661 actagaattt atcgaccacc aatgtctcct tttatcggta agtaagtgaa atccattttc
3721 ttaatatacc tcaattgtgt gtgttggttg aaggatatgg aaataaagga gtagtgcaaa
3781 agacataaac aaataacata atgaataaga agaaaaacta attcaagtga gacgtgacaa
3841 gtactatcct tgaaatagat ccacccttct caaagataaa ctcagtgcac tagggtatca
3901 atggtctacc tccaagattt aataaacaga tctcgcattt ggtgcactct gtaaacaaga
3961 tgtgtatagc tcggattttg aaaaaattct tcaagatata tgtatgaaag actctctaca
4021 aaatttatat tcacatttag agagtakgga tgacctactt ttatagatca ctaacayrat
4081 cctaataaga ctctatttgt aatcggaaca agacaatgaa ctagttaata aacccattaa
4141 agrkgtkcrt ctttttccta cgtgggayaa gcaaaaaaca cttttratac aktgtgttcr
4201 ggcatactct tcactctctc tttttttttt tggccaaatc tcttcactct ctttttttyt
4261 ttttggccaa atccttcaat ctcttcmctg tctcctcctc ttgcttaccc atactctttt
4321 atccattgtc attatccgtt cttgtagtgg cacaaaaagt ggtggacctt tatggtgttc
4381 tcccactcgt acatgtctat gccatggtgt wgggtgatag ttttttgtca agttcccaaa
4441 ggtagtacta ctctattatg cactactcta ctaatagaga acgtcacact tgggagcaaa
4501 accaagtagc ctcgacccta cacaagaatt accaaatatc attagaatgg gaggccaaga
4561 cgacattcac cctcacgata ctcwactcaa rccaatcata gttcttttaa tgatgaaaag
4621 taagcaaaat ataagaagat agagaaggga aattaaccac ctgtttttca ctaaccccaa
4681 tgattattag ccgttgaaaa tgtaaattct cacccacaaa atcaccttct catccacttt
4741 tggatctatt ctacacaata ttgaagcatg atactgaatc tgatacttgg cccaaaggca
4801 agtgactgcc tgtactcatc agaatggtac tctgatatta atttctcatg catgcatgca
4861 tgcatgtatg cctgccagct gcaacctatc ttctttccca cccattctcc ataacttgtt
4921 caactaccaa acaattcctc tcatcatcag ctcgtcagct atattgtgaa tactctccca
4981 caatgctcac caattatata catgagccag gaaccaaaag cccacctcca cccaattttc
5041 tgttaccctt tctaagacat gatgagctga gtatggtcag gcatgtgatg ctggcgttag
5101 agagatatgc ttggagttgg aacaaggatg aaaatatcga tttttatcca aatttaaatt
5161 gtaaaatggg ctgggcttgg agacggacac agcaaccaaa atgtcaggaa aatatcgctc
5221 tgtctatggc acatgagttg aaaattgctg atctcatgga actgtaggcc gcagaaactt
5281 ctccccaact ttagggggca cttccatcct tggattggag tttgtagcag gaatagtggg
5341 gtatgagatg gagagccaag ctgtatccat tgcctataca atgaatatag tgacatgtct
5401 ataatatttt ctcaagtgaa ttgcatcatg gattgtsatt ttttttatat gggattatag
5461 ataaaaaata aaaaataaat ttaaaattaa taaattattt ttatatacta tgttaaatwt
5521 ttttcacttt cttaactcaa atttttaata attttaatta tatttgactt tctttcccgt
5581 tttctacaat aaaaggaaat agaaraaaat catttttctt gacatttttt ttttttaata
5641 ctttttgaga accaaacata gccctagtaa attttacaga tttgatttat ctaggtttga
5701 gaagaaagaa catccatgtt ttcccccaaa aacaatgtgg aaagcaaatt tttatttcat
5761 taaattttac aaatattaaa attatctctc ccttcgataa acacatttaa atatgttagt
5821 aatgaaggga ggatcatata acataaaatc atgcagccat tattagtgta tgcttttaag
5881 gacacattcc cttgtgacaa agcccataag attttggtgg gctgrcccga aacaacatgc
5941 accaacccaa accagacgag atgttttggg tctgggttga gtttggacca gcccaagccc
6001 aaacatttga tctaaatagg aagggtagtt ttgataatat ggtgaaatac atgggcgata
6061 aaagaatcgc cttcgccttt ccactgcaag tattccctct cctccctccc actttgtctc
6121 aaatccaatc agatgaatcg ctttcacgcc gaaagctaag aatctctctt tctctgttcg
6181 catttcgggt ttgaatttgt tccagatttc cgatcgttgg accattcttt cataattttc
6241 catcctattt tcttgtccta caactttccc agaaaatatt tggggtacct katcaaagaa
6301 yttgaaacat tccgcacgct tctccggttt agggtttttc tctgtctgtc cttttcttga
6361 accaagcaaa cccccgaggc catgaaggct aatcccacac ccaagaagag aagtatcagc
6421 ctccaatacg acatcgtttc gacyctctca gaagcgaatc ggctggtttc cagccagaag
6481 aagctccgaa gactccccca catattcaca cgagttctgg agcttccctt tcggtcagac
6541 gccgacgtct ccgtaacgga aacccccgaa ccacctccgg ttcgccgtca ccaccgacga
6601 cgtgggcgac gatgtccgaa cccagacaat ccaactccac cctggcgtca cgaaggtggt
6661 gatcagaggc aggaactttc tggatttgtc cctggacgga ctgggggtgg agctcgatct
6721 cgatttgtgg cggttccggc tcccggcgtc gacgttgcca gagatggcga gcgccgctta
6781 cagtgatgga gagttggttg tgacggttcc gaagtgtggt gctgatgatg atgaagaagg
6841 ggtttggagc gcagggacta ggcctttggt tcttgtacag tgaattttaa gaactgattt
6901 ttcggtccaa gaaaataaat tggtagtgaa taaacttttt cttttcttgs tcaagtttga
6961 atcttgaatt ctatcactam gatgatagtt tctgaatctt tcwacttaac accatgyttg
7021 gatgagaata gaattcaatc cgattgccca aatccttatc attcaatccm gcttggatga
7081 ggtttttttc gattaatttg aatcttattt aataytttta taatatatat caaawwtttt
7141 aaaataatat agattttttt attttaaaat tttgtctttt caactattta aattttttat
7201 aaacatataa aaaaaattaa atattatgaa ttgattttga attacttaat tcaaacaatt
7261 tttatctaat ttaaccaagt tttgaaaaat aatatttyaa tttctaattt aaaatactca
7321 actcaaaact cgamccgatm ttaattttyt aaatttttag gttatatttr attcccaaaa
7381 aatataagag aaaattttaa ttcaccatca ttcttatcat attttcaatc atattcttgt
7441 acatcaataa ttagagtgct tccatatcaa atttctctat taattggaaa aataattcaa
7501 agagattaaa gttatatcaa atttctctat taattggaaa aataattcaa agagattaaa
7561 gytatgttta rttcymagaa aatgcgattg agagggaaaa traaagraaa aaaaaattaa
7621 raaaaaawat ataaattttt tcaataaaaa aawtttagaa ctttatttwa atatatattt
7681 atattaaaat ttaaataata aataaaataa tatttcgtat aacaaaaaaa gtgcaaataa
7741 gtttacatac gttctacaaa ataaattaca atttgatatt tttctttaag tctaatatta
7801 atttaattta attttgtatt atttatttta ttaaaataca aaatataatg tatgttgaac
7861 tgatgacacc tgtctctctc aaaaacccca ttagcttatt ggcatggcrc ttcaagccag
7921 gtggcggaca aacaggggga gagacgtaag ggccgccacc tgtaacactg ccgccacaac
7981 ctcatcttct acacccaacg cgtgttacta taaaccctcc ccgctgttaa accctcgttc
8041 gctccaaacc tccatttaaa tgaaccccat gaggtggtga tcactctgcg gtaagtttgt
8101 tcttgttcta attctatcgg tcgatccaaa atgagccagc aacaacgccc acggccaacc
8161 caacctacaa cagaacccat caaatacagc gatgtttttc ctgtttccgg tagccttgcg
8221 tccaaaccca ttgcgcccca ggatgcagcc accatgcagt ctgctgaaaa tactgttctg
8281 ggaaacaccc aaaagggcgg cccggccgcc gtcatgaatt cggcggccac caagaacgag
8341 agggccggac ttgtcagtca cgagcaggtt actgatgttg tcgccactga cggtgtgact
8401 atatcgcagg ctaacgtggc aggcagccgt atcatcaccg aggcggtcgg tgatcaggtt
8461 tcgatcaatc ttcaaccatc ctcaaatttt tagaaattcc ccatttgttt tggatctttg
8521 gttaatacat gtgataatat cgattggttc tgcaacaggt tgttggcgaa tatgctaggc
8581 caccaccggt ggcaatgact tccccagctt ccgctctcga ccgcgacgcc atcacaatcg
8641 gcgaagcact gcaggccacg gctctctctg ccggcaacaa gcccgtcgat cagagcgacg
8701 cggcggcgat acaagtagcc gagatgagag ccaccggaag cagcgaagta gttccgggtg
8761 gcatagccgc ccaggcacaa tctgcagcaa caaccaatgc ccgtgtgatc ctagatgaaa
8821 acaagactaa gctctccgac attctcacgg tgagagcaag aaacttctct taaatcatcc
8881 gatcgtcatg taacttcata tgataaattt tcaaaggtgc aactattggc tgactgggct
8941 gtgttggttt ccctggacag gatgcgacgg ctaagctgcc ggatgacaaa ccggcgacgc
9001 gtgaagatgc agaaagggtg ataggtgcgg agctaaggaa cgatcctaac atggttacgt
9061 accctggtgg agtggcggag tcggtggcag cagctgccag gctcaaccaa agtacaaagt
9121 aaaagtagcg tttttttttg ctgtggcata acatcgaata ggtggtgtgg gtttagagtt
9181 tcataaaaga cagtgtaaac ttttcattaa gagttgaaat gtgttataaa agtmgaccrt
9241 ttgtgggagg aattttgctt aaaagttaag cttgatggat ttgggytaag agagaaawtt
9301 tgaattcata tccaagggac gatgtaaaat gagacctccc accaarccaa tctggtgggc
9361 tcaagccacg ggcttttatt ttctccgcag atttcgaatc agrtatttgc tttctasgcc
9421 ctgggctggg ctttttctgg atccaagctc taaygggcgg tgatcaagtg ytcctttatc
9481 caaaggtgtt tttatgtatt tcttcacaat tttcaatacc catgtgcact aaaatgatat
9541 aaagttataa actaaattgc cctccataca tttgatctac tgtgataaca aatcggagcc
9601 caataattga agagtaatga atttatttwt tttattttat tttttatttt ttagggtttt
9661 aaaatgtcaa gacagggaag atggtgttgg atgaggaggc aaataagggt gatgttgata
9721 tatrttgatg ggcttacatt attgactgat tgcaatctca tggaagtgkg catgtgtcac
9781 tgcattttgc acacggcttg gctggcttgt ggccacactc cccwacaaag acaactgcta
9841 cagctaatgc ccttacatct catctcctgk tctccatttg cttgtggtca ccccctcctt
9901 taggtcttcc acaagtgtgg gtgaattggt catttaatag gaacttaaca gggtattaga
9961 gtytgtttgt catcctcatt gtacctatta ttttttttat ttattraatt catgtacaag
10021 tccaaaaaaa ctatccaaat ttgctcacca cttggattaa aaaacatttg aaaaggagca
10081 tcacaatcaa catgtgtttt caatgtattc aattgcttat tagattatta aataggtgga
10141 ccctctaacc taactcatca agattcaatt atcaacacta ttgttgaaag gaggagacga
10201 aaaagtgagc gagcttaaga gaatgggtgt ttgctcaaaa gggaaaaatt tgggatgtca
10261 aaaattttrg aggaaaagtc acttggggga cgggtgtttg tttcttggga aaatagaaga
10321 gagtggggag tttggggcag tgagaaaagt ttggaacatg ggctcgtgat gtggtgattt
10381 gttcaaagga caatcatgca gagaaatccc catggtcatc cgctcagggt gatgttgatc
10441 tttcacaatc tggctttgtt ctctgccagt ctcacactgt gcattgtcct cccaaaaaag
10501 tttaaaaggg cttattcttt ttaatatatg tccttccaaa aagttaaaa
//