LOCUS AM454315 8829 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X020860.14, whole genome shotgun
sequence.
ACCESSION AM454315
VERSION AM454315.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 8829)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..8829
/organism="Vitis vinifera"
/chromosome="7"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(808..1032,1304..2236))
/locus_tag="VITISV_002575"
/product="hypothetical protein"
/note="GO:0006629"
/note="partially similar to EMBL:AP008209"
/db_xref="GOA:A5BCB4"
/db_xref="InterPro:IPR002641"
/db_xref="InterPro:IPR016035"
/db_xref="UniProtKB/TrEMBL:A5BCB4"
/inference="similar to DNA sequence:EMBL:AP008209"
/experiment="confirmed by EST"
/protein_id="CAN67759.1"
/translation="MELSKVTLEIFSKLEQKWLSHCEGSKKTRVLSIDGGGTTAVVAA
AALVHLEDQIQLKTGDSHSRIVDFFDVVVGTGIGAVFAAMLTADDGSGRPLFSAKEAV
RFLTEKQCEMFKIKHVGVFRRRRRFSGRSMDKVLKEALRREDGKVLTLKDTCKPLLVP
CFDLNSSAPFVFSRADASESPSFDFELWKVCRATTATPSMFKPFALTSVDGKTSCSAV
DGGLVMNNPTAAAVTHVLHNKRDFPSVNGVEDLLVLSLGNGSLTDPSRWRLRRDGECS
TSAVVDIVLDGVSETVDQMLGNAFCWNRTDYVRIQANGFGIQKVGPRMAEEVLKERGV
ESLPFGGKRLLTETNGQRIERFVQRLVASGKSSLPPSPVKEAAVSPLVNGR"
BASE COUNT 2809 a 1666 c 1654 g 2672 t
ORIGIN
1 taaatttata aagacattct aaattatcca caatttgtca aacattaagc caaaaattga
61 tgctgtaaac cgcattggat tctattttct tagatgatgc ccacggcagg agtaggccaa
121 ggtatagcca ggtaagaccc ctaatttggg gttaaagaag aaaacattta tttaagctgt
181 acaattttgt ctcacacaat gtcgttatat caatttgatg ataatgggtt gggaaagtat
241 attccaccca actaataagt agggtagttc caaagtttga gaaaagaaat gtattataaa
301 agggaaataa aaaacaataa gaaagacaga aagcaacaag tttgggacca tattgaatgc
361 aaatgaggaa ccactggctc tatgctatgc gaacacgagg gaagaagtac acagtgtacc
421 actctttctc gcctaccaaa caaacctacc acaagaaaga ggaaaattca tgagagctga
481 aaaggtgaat gttactaagg ataaaagatg gattttcttt tggtttcagt gggtgttttt
541 tttttttttt ttggtagttt ctttcaccat ttagctaatg agatttagtc atggaaaata
601 ttgaactgtt ccattgcatt tgggttcatg agaagggtcc agcctgtctt actgtttggc
661 aacatctctt gtttcaaagg aagagagaga atgaacacat cattattaga tatttaactg
721 ggaaatacag acagttaagc aaacctaagg ttggttataa caaaggagag ttaactaaaa
781 aaaagggata ataatgaaga tgaaaagcta acgaccgtta accagaggac taacggcggc
841 ttccttgacc ggactcggtg ggagactgga cttccccgaa gcaacaagcc gttgcacaaa
901 cctttcgatt ctctgtccgt tagtctccgt caacaaccgc ttcccgccaa acggcaacga
961 ttccacgcct ctttccttca acacctcctc cgccattctc ggtcccactt tctgtatgcc
1021 gaaaccgttc gcctgcaatt taactccttc ctttagtcac agctagccga attacaaatg
1081 gaaataaaaa gaaaaagcga gacaatgaga cctgaatcat tgatatgatc tatttgttgt
1141 actgcatttt gtgaagagac tggactgagt attaagcaga tacaagtggc aaagaatgaa
1201 tggtatttct gaaattcaaa gcttttattc cttttttttt cgtccttatt ttcctacatt
1261 ttctcaggaa gcaaacacag atttgattcg aaataaaata tacctgaatt ctgacgtagt
1321 cggtacggtt ccagcagaag gcgttcccta gcatctggtc tacggtttcc gaaactccgt
1381 cgagaacaat gtcgacaacg gcagacgtcg agcactcgcc gtcacgacgg agtcgccagc
1441 gagacggatc ggttagcgaa ccgttaccca acgacagaac tagcaggtct tctacgccgt
1501 taacggatgg gaagtcgcgc ttgttgtgga ggacatgagt gactgccgcg gcagtgggat
1561 tattcatgac gagacccccg tcgacggcag agcaagaggt ttttccgtca accgacgtca
1621 acgcaaacgg cttgaacatg ctcggagtgg ccgtcgtggc acggcagacc ttccagagct
1681 cgaaatcaaa gctaggggat tcggacgcgt cggctcgtga gaaaacaaac ggtgcagagc
1741 tgttgagatc aaagcaaggg acaaggagag gcttacaagt atccttcaac gttaacacct
1801 tcccatcctc tctcctcaac gcctccttca acaccttatc catactcctc ccggagaacc
1861 tccggcgcct gcgaaagacc ccaacgtgct tgatcttaaa catctcacac tgcttctccg
1921 tcagaaatct aacagcttct ttagcgctaa acaatggccg cccagaaccg tcatccgcag
1981 tgagcattgc agcaaaaaca gcaccgattc cggtaccaac aacgacatcg aagaaatcaa
2041 caatgcgaga gtgcgaatca ccagtcttga gttggatctg gtcttcaagg tgaaccaagg
2101 cggctgcggc aacaacggcg gtggttccgc cgccgtcgat gctgagaact ctagtctttt
2161 tactaccttc gcagtgagac agccatttct gctcaagttt ggagaagatc tccagcgtca
2221 ccttgctcag ctccatgccg cgtaacacct ctgtttggac agcgagaaaa agagacgaaa
2281 cagcaaagaa aaatcagtct cagttataga agccgtgaac aacgctatcg atcacacttt
2341 ctcgctgaga ggcattaatg gcggaaaatt tctcaatttc tctctcttaa acagacrcac
2401 tccctccctc tctctctctc tctcgctcaa attttgcaag gttgcgatta aagcaggagt
2461 gaagatgcct ttgagtgtct gtgtatttat atagtggcaa tttttgtgtt gtaaatattt
2521 ttttaacacc agagtctacg tgtttctgct gtccacgcac gtgcatcagc gcgtgttctc
2581 ctcgggttgt gggcagcgcc attaacggct ttttagtcgc ttcgctcttc ctaacaaatc
2641 ttttgttttt ccgtgttttt aacttttttc ttttacacct tttcctgatg tctgaggatt
2701 ttgtcatttt tatttttgcc attttttgga atttgaggaa taaaattttt acactaatat
2761 gtttttttta tataaaaaaa aaaatcatct tttaatatct ttccaaattt cttgactttt
2821 aaaataaatt ttatcgtcca ttttgaaaaa aagaaaaaga aaaagaaaaa agaaactaac
2881 caaaatcagt tttaatattt tatttaatct ttttataaaa ttttaaaaaa taagtgaaat
2941 gaatttaaga aaacatgaaa aataattaac tttaaaacaa attttaattt tcttctattt
3001 ttatttttat taatattttc cttcaaaatt atcacgaacc aaataaaaaa taaggataaa
3061 aaataacaaa aaagttaaaa gatttttcct tagataattt ttttaataat ttaatttttc
3121 atctcttaaa aacatcccca atcaaacaag aaaaacaatt ttaaaaaatt tcctacgttt
3181 tttatttcct tatatatttt tttcaaattt ttctaaaaat caaatataac cttaattatc
3241 mcggagaatg attcatgctc catttattac ccttatttta ataataaaaa tattacttta
3301 caaaataaaa caaagtcatt ttaattctct tttattatgt atatatataa tcctaagtgg
3361 aagcctccat cccacattga atgttgatgc tattttaatt ggaagtattt atatgatacc
3421 ttgttagatg aaaaattaac tgttctccct tttgagcctc tttgatatcc attcattcat
3481 tcattgatgc tgcaaagttc tttgcaatta aagaatggtg tcttgccagc ctttgaagtg
3541 ggagctcacc atttttgtgt atattttgat gctctagaaa tgatccaaca cttccatagt
3601 caaattgaat gtacctttct attgtgggag attgctcatg gaccaacaca ataccctcct
3661 ccctctctcc ttctctccaa atctatgggt tagttaggag aagcataaaa gtggattgcc
3721 tgcattgact ttttcttaat taaaggaaaw attttcctta aattgtagta gaaaaggaga
3781 cccaagattg aagcatcata ggattctaaa atgaagagca tcatttcatt agaaagagac
3841 attaaattaa gcattaatta acactaactt ggctggctaa gataggctag aatttcatta
3901 cccatgtctg tccttaaaag gatcacttgg ccttcccatt aattcatgac aaaaggatca
3961 cttggccttc ccaataattc atgataagaa agagacatca tctcttatat tgaatgtcct
4021 tcatcgattt tcataacttt taaacaactc ttaggtggtg tttgtttttt gactgaatga
4081 aaaaaagtca aaatatttaa ctttttctat tccgttaaga gtaacctgtt gatatcataa
4141 agtgaacttg ttatctataa gttcagttta gttatgttag atgatgtcgt aaacaggtta
4201 tttttagcta aatagaaaaa atcaaatatt ttggtttttt ctattcaatc aaaaaacaaa
4261 catcatcgta gtcattctct taaatacatt agcaagtagt tttcaagtta aattcataaa
4321 ttgattaatt ataaatatta ataattttta taaataatta aattcaatat tctcctacta
4381 aaaaagacaa ctcattcaac aggactttta actcaaggaa tctagaatgy gaagacgtaa
4441 aagaccattt cactgatgtg gatgactcac accaaccccc ttttcacttt atttagtaac
4501 aaaaccagaa acaatggagt ttataattgg ggaagattca cacaccccat ttcaggattc
4561 ttcctccaaa tgttgctgca ttgaactgta catcttacag accatgcttg ctctttatta
4621 acataagccc atcaatccac ccactgacaa tactgaataa tcttatagct ttttccagta
4681 ggagggtcct cccttctaag gcagcaaaat tcaaattaat tcactaacac aattcaaatc
4741 cagcatgttt tttgtgaatt tagattaaat atgatcgagt ttaagtcaca tttgtgttgt
4801 gtctataggt ataacgtctt taataaataa gttgtttttt gatcaacctg tgtactcgtt
4861 gattaaccta attataactt caaaatacga cacgaggtaa catttaaatt tatgtttttg
4921 acagaagcac aattcactaa taccaatggc catccttcct ctcttttccc tcttccccct
4981 ccttcctcag ccttaatgct gagggaatcg attgacgact gawttgttgg agtacttgta
5041 cagttgtacc tgaatgacaa tgaagaatgg ataatatttt tttaatttat tatttttact
5101 caagttgacg tttgggggra atrttgttgt acagctttgg aaagaagaag aagaagagga
5161 ggaggaagaa agaggaaaaa ggctgattct ttgccattgg tggtagcatg ggatggtggg
5221 cttttggtct gatggtactg aactggttca aaatgtttga tattattgtc ctctataata
5281 gactgacaca tctgatcagt tgatgtatgt gaatctcttt ccatctgcta tgagggatat
5341 gcatgtctgt tggagataag gcttcaagcc tacaacctaa taatttagtg tagcctgcat
5401 catatttttg tgccagtggg aacttggctt tatgccccca gagtttcttc ccatatgggg
5461 attatgatga aggtagatca atcctttcat atcccattat tgtaacttgt aatatattca
5521 aattataatg taatttagta ttattccttg gttggttaat ttggatttca atttagctct
5581 ttttttaatc tttatatgct acccaaacag agtcttaaat aaatttggaa gtaacatatt
5641 ctaaatggaa atacaatcat gtgagttggg tcaggccaag ctccagaatt tatagaagtg
5701 gatcaggatc atcctctgtc aagaagttgt gacaaattac aatatggttw gtgggtgttt
5761 actggtatgg actatggagt acaactgctt ttgttttcaa aaagcaagag aaacaattcc
5821 aatgtgccaa agacacatgg acaaatcatt tgttttttac ttttccaaaa agcaagagaa
5881 gcagtccttt cccaactcaa ccaagagctt gacgagaggc ccattgggca aaaccctggc
5941 ccaagtacag caaagcccat catcatgcat gaycaacaaa aacacagatg gtaggttttg
6001 tgttgaaatg aaatttggaa ctaattctaa atccaatcca cccatcatcc attgaaaatg
6061 tgcagaaatg gccttctatt tcatgtacaa gctctaaatg gcttgaaaca tagttaagta
6121 aactagctca tcaatatgta aaaactccaa actaagaaaa caaaagaata aaaatactca
6181 gcagaaagct aacacactaa accagggcga cctccttaat aagcaaaagc agtgactaca
6241 aaagcaagaa ccgccatgga aggaccaagc agccccatgg aaacatggag agatgaagca
6301 gggcttggag ccggggcagg tgcaatcccc caatatggtg ccggggcagg tgaatttccc
6361 catgatggtg gtggggaact tggtgttggc caggcagatg gagatggaga cggactactt
6421 ggccatggtt tgggactggg gctggggctg gggctggggt ggtgatggga ttggggtggg
6481 actgggatgg ggtggtgatg ggactggggc tgggactggt gatgggactg gggctgggac
6541 tgggactggg gctggtgtgg gactggggct ggrctggtga tgggactggg rctggrctra
6601 gacttggact ttcaggaggg tgtggaaccc tgatgtcaac cttctgtcct gcttcgcagt
6661 ggcctgggat cccacagagg tagtagaagt ggccatattt tgagatggtg attgaatcgt
6721 tgccggtggc gaatgtggcg atcggagctg ttgcgttgca tgacttgaaa ttgtcgtgag
6781 tcacttgcag cacattatga tattgattgc tgtactcaaa gactgaatgc acacaagaat
6841 attagttccc atttgtagta aaatcaaagc caattggcac caaaattcta caaaagtcca
6901 ttttatgcat attttttaga atcctgcaat gggcttacca ttttgatccc cattttggta
6961 ctaagtacta acatccccta aatgggaaag tggattccca acagccaaac atggtacaaa
7021 tcagtgatga cgacatggta cgaatgggag gtccaggata cagacttttc aatggggaca
7081 atgtacccag aaacaaatga gactattcta tatcatrgat ctaagcctaa gttttcagaa
7141 caatgactcg tctgatatga gtaagmccac aagcacaaag tcagagaaaa actaattatc
7201 aagacagaat tccatacatg caatgactgc tttaatcttg gccattggac cattatgtta
7261 cgcgtcgaac catctcaaaa cggcaccatt tgcgcaactg gactctccac ttcccaacca
7321 tcacaaggca ataccgtaat acgcatcaga ttggaagtgg aawttttcaa ctcacgccct
7381 aaggccaccc ccaaacacgc cctaacgcca aacccagatg gaaaggccca aagccttttt
7441 tgatgaatca atgcacagaa accatactga taaattcaga ggctttctca cgctaacagg
7501 aacagttact agtaaaaacg aaaaataaat aaataattat rctattaaag tcccaagttt
7561 tttttttyyt ttccggattt ccaggaaaat attgcstttg tttggcttga tagaaaataa
7621 aaaataggaa gataatacgg tgagaaacac agtaaactaa accaaaccca actcttttga
7681 tcccacattc cgaagaataa gcaacgaaaa aacaacatgg aaaatttaaa caggaaccag
7741 aaaaaagaag acgaagagga agatgcgtac taatggtgtc tcctacgacg aagtccttag
7801 tctgagacca cagggtgtaa ttaactttcc cgatggtcca gccagtagag tcacccacgt
7861 ggtagacagt agccgcaata gaaacctcac acagagccat ggccatcaag agagccgcta
7921 aaatcttggc gagagccatg actgaaccag agagaaatcc gaacgargtk gtgaaaggtt
7981 acagaacgtt agcgtggata tatataacag cgctggtaga atcttaccag tggttttgga
8041 aagaaaataa tttctcarga ctcaattttg gaaaactatt tcccgtttcc cacaattgtc
8101 ctactttctc gtaatagagc gtttacgtgt ggaaattaag atgtccacca ctcctcggaa
8161 ttcatctcca ccgtccatct ctcagatctg tcaaattctg acgactatct tatgtcagat
8221 tctgacggtt atctaggatc agaaaatctt ttccttttat ttttgaatta gcaggtcgtt
8281 tgattggttt ttgctttccc aagtttttct cttttactra aatawacgaa taattttttt
8341 ttttaaattt gggaatttat ctcaccttta atgttaaaaa ctgaaaaaaa tttcaaattt
8401 gaaagatgag aattatcgtc tttaatgtta tgataggatg atgttaaata ccataaaaga
8461 cttgacttat cgaaacaata attgatttta gaaggaaacg ttcaaaaaag tccaattcaa
8521 ttattattct ttttataatt tgattttaaa aaaataaatt ttatgataaa tttgaaatat
8581 tttaaatgtt taaatttatg gtcaatgaca aattttttca ttattgtatt ttataagatt
8641 aacttgagat gattggtttt tcatatctta attttttaaa ataatttaat ttctaaaaat
8701 aatgatttta ataattggcc ttaaaagcca tgctttgatg atcattaaaa aaacattgtg
8761 gaataagttt taaatyytta gaaataattt attatwacat aataatcttt tattattata
8821 tatttgata
//