LOCUS AM450635 10453 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X260808.5, whole genome shotgun sequence.
ACCESSION AM450635
VERSION AM450635.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10453)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10453
/organism="Vitis vinifera"
/chromosome="13"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(1124..1147,2462..2563,2736..2786,2871..3014,
3150..3245,3382..3483,3741..3833)
/locus_tag="VITISV_018694"
/product="hypothetical protein"
/note="partially similar to EMBL:AP008216"
/db_xref="GOA:A5B8U1"
/db_xref="InterPro:IPR009769"
/db_xref="UniProtKB/TrEMBL:A5B8U1"
/inference="similar to DNA sequence:EMBL:AP008216"
/protein_id="CAN74297.1"
/translation="MDYKKKNSIKAQKTLMQLVGADWLRSNKREDDLAGRPGSIVQKY
AEWSRPEFFFVVNLQLPGATRYNLALYYMLRTPLKDTPLLESFVNGDDAFRNSRFKLI
PYISQGSWIVKQSVGKKACLVGQALEINYFQGKNYLELGIDAGSSTVARGVVNLVVGY
LNNMVTEMAFLIQANTQEELPEVLLGTCRFNHLDASKAVLVQP"
BASE COUNT 3511 a 1797 c 1895 g 3250 t
ORIGIN
1 tctataaccc tttttggttt gagagtatcc cacaaacaca cattttaaag cttggggatc
61 aagtttgtcg tgatttggag gataaacata gacaaacgat acacaactaa aaactttaag
121 aggaagttta ctgaagctat tcaaatgtgg gaaaaaattt gagagtgtgt ctaatagagt
181 tttattttca agcacttttg agggcaatcg atgaatcaaa tgagttacga ttaagacagt
241 cactccctaa tgtgatttag gcatattttt ctgaaaaagt tagcctcggg tgatttctaa
301 tagatgttta ttttccgttt aaccacacca ttttgttgtg ggtgtataat cccttctttt
361 tcaagaaaat gagatgaaac cttattaaag tactctttcc tattatcaaa tctaatgact
421 tttattttaa ctctgaactg tgtgctaacc atttggtgaa agatagaaaa cgcagaacta
481 acatcttatt tgtttttcat gaagtataac caattcaccc taatacaatc atcaataaag
541 gacgcaaacc acatggatcc aaaaagactt acgattcgag agggacccca aacatcagta
601 tgaaataaca agaaaggaaa tgttaatttt gtattactta aaggaaatgg aacatgatga
661 tgtttagcta attgacaaac ctcacaatga aaactgttaa catccaattt attaaataat
721 aaaggaaact ttttttttag caaagaaaag atggatgccc taaatgaaga tgatacaacc
781 atatttgggc ttttattcaa tgagaacatt tttgaaaaat gagagagtgg catacgaaca
841 ccattgccaa aactggatcc aagcacatac aaaccctcat tttccttagc atgctcaatc
901 gtcctcgttg tggctcggtc ttggatcaca caatgagatt ggaaaaaggt gactgtataa
961 ttcaaatctt tagtaatttg atgaattgac aagaggttag ctaaaagttt tggaacatac
1021 aacacagatt ttaatgtgaa agtcaaagtt aaagcaattt ttccttggtc tgccacagtt
1081 actttgtgtc atcaacaact ttaatttttt ttatccctag aacatggatt ataagaagaa
1141 aaacagtgtg aagaaaaggt catatgatca gtagcatgaa tgtcataagt aattgataac
1201 attcatctgt tctctagaaa caactccatc atattcttct atcaacaaca tgaaggaatt
1261 aaattaggcg ttttcatggt tgttatattt aatgaatctc atgttgattt ggggttttca
1321 cttttaacat tgtttcacta gttcaagtat aataaatcaa atgctatatt tcactctcaa
1381 tcaatagaaa aaactatgaa acataaactg taccagattt ttagcatgtg caaccatcaa
1441 aaccagagat caaagaccga gtatcatggt atgttatcct ttcatgaaac agatggggaa
1501 ctaaacagga gaatgaaata ttcaatacct tgtgtttcca gagggaggta atattatggg
1561 atgtgtagtc tatccaaact gctttcccat gaaccaagca tggcttaaat atttgatttg
1621 tgaggttaaa aacatgatgg tttggtcaag aaccggctga gttaacccat ggcttgattg
1681 agttcgaact agtccaatga atggatgacc aagaataacc ggctcaatca tccacagact
1741 tgaagagcat gtgagcatgc tgccaaccaa attaatatga agtggtcaag tggagaggtg
1801 ctctagatgt gtagttagta gtgtgtaaat gatgaatggt taagaaggat tcaagtagtc
1861 aacccaagaa gttgggattg aggctttgtt aagttcatta gcttactgat actttatggt
1921 gtagattttg ggcaatttag gaataacatg tttataaatg atatgattaa aaatgaatta
1981 ctttctcaag gagttgaggg tagcatcaat tggaggcaag atgagcaagg ccatgaatta
2041 catggttcac agttctggtt gaaggtacta aaattagagg gtaacaccac aaagggttcg
2101 ggtctagagg aaagaggtta gctcataatc atggccctag atagattaga atgatgaaaa
2161 gggttttact gcaaacctca gatattggta caaaggtatt gctgattttg aattgaattg
2221 acatctaaac actccctaca tggtttcact ctcctcagcg ccacctttta gcaccataat
2281 ggaaatagtg tatgaggaaa gaaagcagga ctttcaaaag acttggatgc tgtttcacga
2341 cttcatgtca aatatccaat ggctaaatat gctttggaat tggtttgtgt taaatgatgt
2401 ttttcatttt acttattcat ttatttttta attctatact aaatcattct ctgttgctta
2461 gattaaggca caaaagacct tgatgcaact ggttggtgcg gattggctaa gatccaacaa
2521 gcgggaggat gatctggctg gtcgtcctgg aagtattgtt caggtttgat ttataaacat
2581 aagtgacctt ttggaataaa gatcttgttc atcataaata atcatctata ttcaagataa
2641 aactatatgt gcacataaac aagaaaaata aataaaagag aaaagaacca atatcaattc
2701 tcctcctaca cgcaagtttt gttggaactg tgcagaaata tgcagagtgg agcagaccag
2761 aattcttctt tgttgttaat ctacaggtga ttatcatcat catcatcatc atcatcatca
2821 ttatcatcct caggaattag aaagatttac tgtaagagtt ctttgaacag cttcctggtg
2881 caactagata taatcttgct ctatattaca tgttgagaac tccactgaaa gacaccccct
2941 tactagagag ctttgtcaat ggagatgatg ctttcaggaa ttcaaggttt aagctcatac
3001 cctacatttc tcaggttagt atacccacta aaagcatctc attcagccaa aaaacaaaca
3061 taatagttga ttgaattcag accataaatg atcttgtctt aacctattct tgcaaattta
3121 tacttttcta cccaatgttg gtctcttagg ggtcatggat agtaaagcag agtgttggaa
3181 agaaagcatg cttagttggt caagcacttg aaatcaatta ttttcaaggg aagaactact
3241 tggaggtaaa atacaaaatt tataactaat aaaccaggag agtggaagat ggacattggt
3301 ttctactctc gctgcttgta tcaatatttg agttggatgt tctgcaatat gctgatttgg
3361 aagtgttttg ccaaaattca gcttggaatt gatgccgggt catcaacagt ggcaaggggt
3421 gtggttaatc ttgttgttgg atacctgaac aatatggtca cagaaatggc atttttaata
3481 caggtaaaaa tagctatgtc ctcatgattt atatcaggga ttgtcatcca tatcctctaa
3541 actgactcaa aaatctgcat gcatgtaaag aaactgaaag attttgcaag ataatccaaa
3601 aataccaatt atatttggga aaatggaagg caaacgagag gaaatatatg ttcctctcac
3661 cagcatcatt gtcatttact atatatatat acaggatggc atgttttctg aacatgtata
3721 aacccaaaaa catcttgcag gctaacacac aggaggaact cccagaagtc cttcttggaa
3781 catgccgctt taatcatctg gatgcatcca aggccgttct agtacaacca tgactatcgc
3841 ctagacaatc tcgtagtagt ccattgtagg gcacaccagg cactggatta ctgagttgtg
3901 cggaacagaa atgtagacag gagagagatc caccttttgt tttgcaacca atcaaattcg
3961 cattggcagc tgtatctttt gtcaaagaaa aattctttgg ctggggcaat taattttgta
4021 aagtactaca tccataagta cctaattctt caaattcatt gatcataaaa aattgtgcat
4081 tgcctctagt ttaaaccatt attataaatt tgaagctttt tagtacagat tgctgttatg
4141 cagataaagt tttccatgca attggatcac tgatcctagc ctgaaatcca ctgtgagctg
4201 aaagacaaga aacagaaata tgaaaacaat ctggattgat tgttttgtat ggaaacactc
4261 aagtatcact tgattacccc ttgtgaagca cttgtcctcc tttttcacag gaaatcttct
4321 ctgggttatt ttcctatctt gtgtttggct gagaggaaac tatttttttt gtcccattaa
4381 gtgattttaa tatgtgaaga aaatgaagcc ataaatgatg agaatgatga aagattggaa
4441 tgtgattatt cagtttaagg gaaaagataa gataatgatt cccacttttg aaaaaagtag
4501 ccgtttattt gatacaaagt gccaaaaatt cccatgcatt atcagtagag agcattcttt
4561 caaaatgatt aaaatggaac catttcagaa tttaggaggc cctactcaca tcattattgt
4621 tttcctagct tcactccaaa atcagaatga ttccccaaca atttctcaat tataagttcc
4681 aatcaatttg gactcggtta gatagcgatt ataggaagcg tttttagtat aaaaagtata
4741 tttgaaaaaa cattagagtg tgtttaggag taattttata aagtatttct aacattttta
4801 acacttgaat gataaatttt gtttgaaaaa atttatgaaa tactttaaaa aaaaaaaaaa
4861 tcacttataa tgttgaaaaa tcacttgtaa tgttttctaa acaaatactt cataggtgat
4921 tctcccaaaa atgtttcatg agaaaacact tccactaaga acactttgaa taaaagcact
4981 attagagtcc atttgacagt aattttagaa agtattttta aattttttaa tatttaaaat
5041 tttttatcat ttaagtgtta gatagttttt tagaaacact acgaaacgag gttaactttt
5101 cttttgaacc aaacactaga aactgaaaca cctaagccca gcccaatttg gaccaagctc
5161 gaagcccacg ggccacaaac aggggggcaa atctaaacca ttaaagagtg taaaacacat
5221 ggctgaaatt taaccacaaa aaaatttggt aatagacaca tgaacagacc aggcccaatc
5281 aaccataaat tcgggaaata caacggaatt cattaatggc atgaattgac aggcccagtc
5341 aagtcagggt caccaaagat agcctcaccc atcgccggcc cggccctttt aatccatcct
5401 agacaaacaa caaatcacct aatggcccaa aacgtcattc aatcagggcc cattattaat
5461 taaatctctc tcacacacgt tgtcgccacg ttgtgtcaac ccattgagcc cccccacgtg
5521 gcacgtgacc acattcaaac atgccttttt aaaaatttaa aatttaaaat tttattattt
5581 taccatattt tgaaaatcaa aatgcccaca tgtcagcatc gctttcatgt ccctcttctc
5641 ggcacccatt ccggtggtca taataataca tttacattat tttccacgtc accatcaccc
5701 tactcttatt attttatctt cataataaca cactggcatc atcacatgca ccactactat
5761 aacctcattt ttataccatt aatgccctgt ttggttttca aatctcttgc taaaattgat
5821 taaataaata ctatatatta tttaaattta aataaaatat ataaaatata agaaaaaaaa
5881 aaagcttaaa gtattattat tggcatataa ttaaagatat ttataggggg taagaaaatt
5941 gtctgccaaa cagagttagt tttaattcca ttaaaagaat aaaattaaaa aaaaaaaaaa
6001 gaatactgaa atgtcaacgg tccaaatccg gagtgcaacg gaaaccgttg gaagaacgga
6061 gtcacgagag tcaaaaaata ccgcaccgac gcggtggcgc actacactca actgttgtat
6121 aggaatttga acttcccact ttccgtagcc ggtaaaacgt tgtggtggtc acctggtatg
6181 cccggtaact gtgtcggtga aagtttgggg attagtgtcg gcaccgacac gccagattta
6241 ttcccggtca tctcggtgtt atttttaagc cactaaaata aaaaagaaaa aaaaaaagaa
6301 agaaaaaaga aaaaaaggtt gaggtccagg ggtatttcaa tgtgctttcg atttcattgg
6361 tttatggtac cactgaaatg ggacttcttc ggatttgtac tgagacgggg ggtgtgattg
6421 gatgtattgt gggctatggt gatacagtgg ggttcaatta tgggcggcat gattaggggg
6481 tggtggtggg gccattgtgc tattttaacc gggtatgtac agtcggcaag cgagtgatca
6541 cgtgcgcacg tgaattacag cgaataaaga agggcatgat cttgaccgtt gaacgtgtgg
6601 actttgagta tttgtgtggc ttaccaaaac tggtccttgg aaattaaact tattccagac
6661 aagtactcac ctcaccggct gttggtttta gcaatcatac tctaccttgg aaagttcacc
6721 gggttttgtc tcatccaaac tttatgtacg aaagttagaa aaatatttat attttttcca
6781 caaatttgtt taatgcaatt atttttattc aataaagaaa aaaaattcgt cataaattac
6841 acctccctct tctatgctct ttatattttt ttgataaatc aaaaataaaa ttccaaaact
6901 ttccctttta ttagaacata ctacttttag ttaagcatgg tggagatgat tatttaagga
6961 aaataatatt aataaaaaaa ttaaataaat acttataaag gttgctgcta gtttagtcat
7021 tgagtattaa caccgtattt ctaaacgaaa ataaataaat agataaatat tgaagtgaat
7081 ttaatttggt taattaatag aattaaagca tatttgagaa tcatatttta taataatttt
7141 ctatttttca aaacaaaaaa tatagaaaac atgttttgaa actaaaaaac cttttcccgt
7201 tttcaatttt ttgtttttaa aataaaaaaa caatgtgctt ttaaaaaata atttttagtt
7261 tttttaatta ttattactta ttttttataa ttgctttaag aaataattat acaaatatac
7321 ataataatta aaaataaaac attatataca taaattattt ttaaaaaata tatttaaaaa
7381 tattaaaaat cgattaaaaa tattttagat tttcaaatag atattttttc cataaaaatt
7441 aaaaaaccaa tttttataat tattttcaaa aataattacc aaacaaccct tacgctttat
7501 tttgcaattt gggttgcatg gatgctattt ttgaaaatgg gtttttgttc tgcataatat
7561 agagtttgat tcacattcat tttaaaaaaa gtttttattt ttatttttaa tatttaaatg
7621 ataaaaactt ttaagtatta taaatattaa aatcatttgt tttagaaata ccacgatctg
7681 ttagactttt atttttattt ttttttcatt ttttgattag acattatgca aatatattaa
7741 aacaccgaca ttccatttct attttctctt aggttttatc gttttcatgg atgtcataag
7801 aagaaatttt tgttgcactc agtgccagta tagtggacaa atctctcaat ttgccttacc
7861 ctggacgata cacggtttct gatcacatac ggctccaact atttttgtac ggatgtgccg
7921 gtgaccccac catcttcatt ctccaccgtt gcttaccacg accaaggagg tcaataaaat
7981 atatggaggg cagttcggta aataaaaggt cagcatcaca acgtggcgaa taatcatacg
8041 tccaagtaga caaatcgatc agtttcattc gaagtttgaa aacccggagc agggtcacgt
8101 gacgctgtcc cacatgccct ctagacacct cgctggccgc gatcagctga ttcgctgcgc
8161 gtgggctcca catcggggaa tcaatctctt ctcgccacgt gtcacaacgt gtggacgagt
8221 atctaccgac tctcgaacgt gcaaaagggc cccacagaac atgggttcgt acatcctcgc
8281 acgcagtata tgcactcccc ccgcttttag cgccggaaat agccacgtca ccagaattct
8341 cacgtaatcc ttaattacca tatcacccac tcccaaatca gtataacatc ggaaattaga
8401 gggtgatttc gtcattacgt cgcacttagg aaggttacgt ggtcctttcc ttcgtcaaac
8461 tcaaatatct acgttataac taacatgaca tccaaacaca acttcaatcc ccactctcct
8521 ccaccagcaa gtgaaacaaa gccagtcaat tccacagtca acataggcgc gtggttgtca
8581 ctcgcggccc catcagcgag tgcgtgatta cccctacgga atatggtgac aacgaagggc
8641 taaccagagg cctcccaaat ttggttgttg taataaaatc aagatttcaa aaaaaaaaaa
8701 aaaaaaaaaa aaaaacaaat taagtaagat taagcaacaa gagagagcta agatgttgga
8761 aaataagagt caatttaagt ccatgtctat agggtgctgg cattaattaa agctacagaa
8821 actcgagagg aagaggaata cttgagctta aacacccaca taattttttt aaagacacaa
8881 aaccaccaaa ttagggcaca cccccatgtg cacatcctcc tcgcccacat tctgtatacc
8941 gacacatggg ggggttatgg ttacgcaact aatactttgg cgtttattaa aagtgattaa
9001 tttttatgga cagcgacaaa agtgagggta cgctttttat ttatttattt tgctttgggg
9061 tgggggggat ggggggtcat gcacctttct ttctttattt aaataagatt tgaaagcgtt
9121 acacatagga tagataaggg tcatgcagag gggtggtgcc ctggtgggcg tcggtgacac
9181 ttttgggtct atattttcac gtgtgggcga ggcatcaatc tctctttatt tcgatggttt
9241 gggttattta tcagaggagt aatttgaatc caagggtggt tgtacaaaat tatattttga
9301 aaattaaaat acccaacagt gactacttaa cacattttga atacgtactc agagtggcat
9361 tggttagggg ttgatgatga tgatgattat tattatgggg ttattatttg gtcatgaatg
9421 atggcccaga gcacctttcc ttttcctttc aagggaagaa atcacatgcc catcacgctt
9481 tattaataaa ttatcaaact tacttactct ctctgttaaa tgcttttcaa atatatttcg
9541 catttcctaa acaaaaaaaa ttcaaaattt acataaaagt gattttacga aaaagggtat
9601 gattaaataa aataatatat agcaggcatt gtcactttat ttatttattt tttatgacgc
9661 ccacataaat taaaaataga aatgagagag agagggactt tattgaaaga gggagaagtc
9721 ttttagaagg aaacgattca aagagtagaa cccaagtcat atggttaaaa agagcaaagt
9781 tgcatgcagc acttgccctt tcaatattgg atttcctaga catagaaaga gagagagaga
9841 gagtatggtt gaagggattg atgcaaagag tagaccacaa gtcagtttta aaaagagaga
9901 gatggataag ggtatgggtg tgaggcccat catttctatt caggcccaaa ccacgacaac
9961 cttctgttat tgggtcactt ttcttaaccc tttttttttt tttttttttc cttatttacc
10021 ccaccccaaa tagaataaaa taaaatctaa tttttaattg ggggtaggcg ttccggggcc
10081 aaaactgtaa atgttgaccc attgagtaac gagctgattt taaatgcgct aagcaaattt
10141 cccttcctaa tataaccgtt agtttgaagt ttcatgacta ttttaaagtt caggaagcag
10201 aaatgcccgc aaaggtacat tgaattacca cgcatgccct tctggaaatg aagaatgaat
10261 gatctggtgc tccgcggagc tggtgctctt gtacgatacg aaacagggcc cacataccaa
10321 tcgataaagc ggggatttga tagtacgcag tacggtgtct tctgtgcagt tgctccttgc
10381 ttgaatgata gtaaagaaat tgtgggacca acctctgcgg atcgaagggt ggtactgcgt
10441 tgaatgtcag caa
//