LOCUS AM450441 9120 bp DNA linear PLN 05-FEB-2008 DEFINITION Vitis vinifera contig VV78X137958.3, whole genome shotgun sequence. ACCESSION AM450441 VERSION AM450441.1 DBLINK BioProject:PRJEA18357 KEYWORDS . SOURCE Vitis vinifera (wine grape) ORGANISM Vitis vinifera Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis. REFERENCE 1 AUTHORS Velasco R. JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and Molecular Biology, istituto agrario "San Michele all'Adige", Via Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY. REMARK revised by [3] REFERENCE 2 AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R. TITLE The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome JOURNAL PLoS One 2(12), e1326-e1326(2007). REFERENCE 3 (bases 1 to 9120) AUTHORS Velasco R. JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige (TN) - ITALY COMMENT NOTE: This is a 'working draft' sequence. The true order of the contigs and the gap size among them are not known. The actual genome coverage is 11X, 7X sequenced by Sanger method and 4X by pyrosequencing. Sequencing effort has been performed by IASMA, Myriad Genetics and 454 Life Science. The gene prediction has been performed by FGENESH program in collaboration with Softberry, while the identified genes has been annotated by similarity search and their function has been described using Gene Ontology terms (www.geneontology.org). FEATURES Location/Qualifiers source 1..9120 /organism="Vitis vinifera" /chromosome="19" /cultivar="Pinot Noir" /mol_type="genomic DNA" /clone="ENTAV 115" /db_xref="taxon:29760" CDS 5002..5376 /locus_tag="VITISV_033928" /product="hypothetical protein" /note="GO:0015074" /note="partially similar to EMBL:AP008212" /db_xref="InterPro:IPR013103" /db_xref="InterPro:IPR039537" /db_xref="UniProtKB/TrEMBL:A5B8L0" /inference="similar to DNA sequence:EMBL:AP008212" /protein_id="CAN65358.1" /translation="MNSMYMNGVWDLVELPHGCKPVGCKWVFNTKRDSNGKIERYKAR LVVKGYSQREGIDFKETFSLVSTKDSFRVIMAIVAHFDLKLHQMDVKTAFLNGDLDEK VYMEQPTAFCRSWKGRFSLQAQ" BASE COUNT 2910 a 1256 c 1739 g 3210 t ORIGIN 1 atggaagtca taaatttaaa attgaacgat gttttttaac ccttcaatat ccattgaaaa 61 accatcaaaa gatacatgaa tatgaattta ttataaaaat atatataaat atgaatttac 121 tattaattta tttattttaa aaattattat aaatatgaat ttatttatta tcaactataa 181 atgcatatga atttattatt aatttattaa tataggatak ttactccttc aatgtaaaat 241 attatatttk cattttctta tcaaatataa aaattaaatt ttaaatataa atttattata 301 aaattaatga attgattatt aatgtattaa tcttatttat atcaaataga tatcaatatt 361 tactataaat atattagagt cataaaattt aaaataaaat atacatgaat atgaatttat 421 tataaaaata catgagtgtg aatttattta ttatcaacca tatatgtata gaaatttatt 481 attaatttat taatacaagg tagttactag ttcaatgtaa aatattgtat ttgctttttt 541 tttttataaa aatataaaaa ttatgttttg ctaataacgt aatacgtttc tcattttaaa 601 ttgattttaa atcatcaaaa taatgtaata aatttatttt tattttatta gtaactacta 661 attacagatt ttgaaaaata aaactcttaa gttgtaaaat acaaattgaa atattatcca 721 aaagttaggt catgtttaag gaaatacaag aagggtttgt tggaattttt atgtgtggac 781 ttacataatc aatttgataa tatcataaat cggtgttaat ttaatttttg cattgtggtc 841 cataatggga ctgaacacat attgttgctt gattttttat aagctcaccc taattcactt 901 gactggccca ttaagtcaag tggtccaaat aatgtgtgta atgtgtaata tatatatgaa 961 tttatttaca gatatatata tatatatata gatagataga taggtatatg tgcatttggt 1021 gagactcctc attttcctct cttagagagt actgcacgca cacacactta cacttggact 1081 gaatttttgg ggaggaaagg gaagagctca ttgatcccta attctcgtac catcatgcac 1141 ctggagcaac ttcttggata tcagaggagg aagaaatggt tttccatggc ataaaccaag 1201 gtaaccagtt cattttttgc cattaaatgc atgcttaaat gttaacatgt gatcctatgc 1261 tatttcaatt ctcttcaatt ggtatcaaag taagcatgga tgacatttga gctgcaattt 1321 tgggttattt ttttggtctc tcgttttctg gttatggaag ccattttttt ggggggtttt 1381 tttcatttag tgtttattct tggttttcaa gcccgattga ggttggagac ttgtagagaa 1441 tgttgtttgg agcaaaaccc atctttttta tggttttttg gagctcattt gatgggattt 1501 agaaaattag ggcttatttg gttcttccta ttatgtgttt tttttttttt tgtgcatttt 1561 tgggtttaga tcgaaggatt gatgtttgag gatggaaatc taagtgtttt tgtcgaaaaa 1621 tgagcaaaat tttaggtgga attttttttc tttatttctt ctccagaacc aaggcgtgtt 1681 cagttggaga agaagatgaa caacccttgc tgacgtcatc atgacatcat taaagaaaac 1741 aatttttttt tgttgccttg gtattcttgg attgattatg catatgttag aattattatg 1801 catttgttaa atttgacttt attgggacaa ttattattat tattgttttt atggtataat 1861 ttttatttta taccaataat gttgtccaag gtcaattttg ttaactattt aaatttattg 1921 tggcaataaa taaataacac ttgtgtgatt gcctatcgca attccaagtg tgtcaagttg 1981 cgcaaattaa atatttcagt ttatcatgac aatagtgaac atatatgtgg ttgcctatcg 2041 tgatcctata tgtgtcaaat tgtctttgct aagataattt aacccccact tttagttgtt 2101 ttattgttgt gattactaag atccatacgg atattgtaat tgtcctatca atgataataa 2161 tacttggtag gatgcttaga ttggtgaagg aaattaattg taaattatga accgtactaa 2221 ttttctttgc cttttcggta ataaaataag tacatattgg ttgtgatatt taattagttg 2281 tccttatcgc cgtggaattt tcaaaattcc aagctattgc taaattgaga aattatggaa 2341 agtagcaaag gcataacatt gtaataacat gcatattgtt gaattttgct attttccatc 2401 taccagcaat cctggtattt ctttgcaatt gtctgccatc aaacctctta ctagaaataa 2461 ttttgaagaa tggtttgagt ctttcaacgt gcatatgact ctgcaaaatc tagacttggc 2521 tttgagggtt gatgagccaa gtaagctcac tgatgtgagc tctatagatg aaagatcatt 2581 ttatgaaata tgggagcact ccaataggag ttgtttgctg gtgatgaaat acactatgga 2641 taaatcgatc aaagaatgca tgctaaagac ggaaatggcc aaagacttct tggaatatgt 2701 gaaggccact tataccaaga ttgataaggc agaaatggca acttatttgt tgcttctcac 2761 aactactgtg tatgatggat taggtggggt tagagatcat atcatcaagc taaagcacta 2821 cttcaacaag gcaaatgaga tgaaagtgga gttgggtgaa aattttctaa aatggttgat 2881 acttgagtct cttcctattt cctttgatgc agtgaagttg acttacaatg cttgaaggaa 2941 gaattgactc tgaaggagtt gatgtccatt gtagtgtaac atgaagtctc actaaagata 3001 aatgagactc actcccttac tcttgtgact aaccaagtca gtaatatgaa gaaaaaacct 3061 ccacacaaga attttggggg ctttaaacaa ttcaagagga aagggaattc aaatcaagga 3121 acctccaatg catctgcttc ttctaatgct gcaaagagtg agaaattcaa ggggaagtgc 3181 tacttttgcc acaagattgg ccacaagcag gctgattgct tcaaatttaa aaattgacta 3241 gagaataaaa agaaagatga aattgtggtt ctggttaatt tgaatgcaaa catgattgag 3301 acaaatattg ttgatgttca tgccaattct tggtggttag atatcggtgc cactattcat 3361 gtcactaatt ctttatagga gatgacaaac aaaatgaggt catcaaagca tgaagaatat 3421 gtgtatatgg gtgatggaag caaagtgaaa gtggaatttt ttggcatgat aaagctaagg 3481 ttgatcatag aaagtttttt gttgttacac aatgtggctt tcataccctc acttcggagg 3541 aatctaattt ctgtatcttc tttggataga catggttatt cttttcactt tggaggtgga 3601 aaagtggata tttttagcaa ctcattctta attggcaatg gtgttttgtt tgaaaatctt 3661 tatagtctca gtttgcatca tggttcatta tgtgattcat cttctattaa ttctattgtt 3721 ggttgcaagc gtgctagaat gaatttgagt tcttccatgt tgtggcacaa atgcctaggt 3781 catatttcta ggcaaagatt agagagattg gttaaagatg gtgtgctttc taatcttgat 3841 ttctcagact tcgagacttg tgttgtttgc ttaaagggga agatgacagc aaagaccata 3901 aatgagaaga ttgataggtg tggaagtact ttagacttga tccacacaga tatatgtggt 3961 cctttgacac caattgcttt agggggttat aaatatttca tcacttttat tgatgatttc 4021 tctagatatg gttatgttga actaatccat gagaaatccg actccctaaa tgtgtttaaa 4081 gcctttaagg ctaaggtgra gttgcagttg ggaaagctca ttaaagttgt gaagtccgat 4141 agaggtggtg agtattatgg gagatatgat gagattggac ggaattctag accattcgct 4201 aagtttctat tggaatgtgg cattgatgcg agatatacaa tgtcagacac tcctcaacag 4261 aatggggttg cagaaaggag gaatcacaca ttgttagata tggtaaggtg catgttgtct 4321 aatttctctt taccagaatt tctgtggggt gaagccttaa ggactatggc atatattttg 4381 aatcaagtgc ccagtaagtc tgtgcctaag acaccttatg agctatggtc aggaaagaaa 4441 tcaagccttc accatttcca tgtttgggga tgtaaggctg aggttagacc ctataaccca 4501 cagtaaaaga aacttgatcc taaaaccatt agtagtttct ttgttggcta ttgcattgga 4561 tcaaggggtt ccagatttta ttgtccatct cataccaccg agatcattga gtcagatagg 4621 gttgtatact ttgaggatga agttaatgct gatccaaatt ttgtgtctcg tgagatacct 4681 tttggagaag agcatgttgt gattcctttt cctacatctc atgttccaaa tgtggatgtt 4741 cctattgtcc aacagttagc cactaatcaa ggagagcatg gtgatcaagt ggaatctggt 4801 cttcctatag atgatactgt tgttgatgag gttcctttga gaagatcata gagggttcgt 4861 aggccaacta tttcagatga ttatatggtt tatttgcagg agcatgagta tgatggttat 4921 gatgcttttg atccagtcac ttatcaagaa gcaattcatt gtcctcaatt cacttcttgg 4981 aaagaagcca ggaatgatga aatgaattct atgtatatga atggtgtttg ggacttggtt 5041 gaattgccac atggttgtaa accagttggg tgtaagtggg tctttaatac caaacgtgat 5101 tctaacggaa aaatagagag atataaagct agacttgtgg ttaaaggtta tagtcaaaga 5161 gaagggattg atttcaaaga aaccttctca cttgtgtcga ccaaggactc ttttagagtg 5221 attatggcca tagtagctca ttttgatttg aagctacatc agatggatgt caagacggct 5281 ttcttgaatg gtgatttgga tgagaaggtg tatatggagc aacctactgc tttttgtaga 5341 agttggaaag gaagatttag tttgcaagct caataagtca atttatggtc ttaaacaggc 5401 ttcgaggcag tggtatctga agtttgatag gattatcacc caaaatggtt ttaaagataa 5461 tacaattgaa aaatgcatat atttgagggt cagtgggagt agttacatat ttcttgtttt 5521 atatgttgat gatatactac tcgcatcaaa tgattctgac ttgttaattg agacaaagca 5581 catgttgtca accccttttg acatgaagga tcttggtgag gcttcttatg ttttgggcat 5641 aaagattctt cgtgataggg ctaatggagt gcttaaattg tctcaaagaa cctatattga 5701 gaagatattg aagagcttca atatacacaa ctatagatct tctaaagcgc caattgtgaa 5761 gggtgataag ttttcaaagg ctcagtgtcc tcaaaacgat gatgaaagag aggaaatgag 5821 gaccattcct tattcatctg tggttggcag ccttatgtat gctcaagtat gtatacgctc 5881 taatattgct tttgttgtgg gcatgttggg aaggtacttg agcaatcttg ggagtcaata 5941 gtggaaagtc gctaagaagg tccttaggta tttacaaggr actaaggact taatgttgac 6001 atattggcac accaacttac ttgatgtagt taggttttgt gatgctgatt ttgytggctg 6061 catagatgat aagaaatcca ctacatgcta tatttttatg atggtagaag gagccgtatc 6121 ttagaaaagt gtcaagcaga cacttacagc atcctcaact atagaggtag agtatgtggc 6181 atgttatgag gcttgttttc atgttatgtg gatgcagaat tttatttcag ctttgggagt 6241 tgttgactcc atttctagac cgttgaaatt attttgtgat aattccgcag ctgttacttt 6301 ctctaagaac actaggagta tttctctctc caagcatatt gatgtaaagt tctattttgt 6361 taaggagaaa gtggcagaga ctcttattga tattgaacac atgtccacaa aaagtatgtt 6421 ggcggatcca ttaacaaaag gcttacccat aattgtgttt caggaacatg tatctcaaat 6481 ggggttattg gaagcctagg ttgtattaag ttagtgggag ccacttttgg tattataata 6541 ctatgttatt gttggaagga ttgctattat tgtatatttc cctatgaatc aagcaatgaa 6601 gcatatatga ttgcttttga ttatttgttt ttgatgagat tctatgggac atttatttat 6661 gattatgtat gtgttgtgat gtttgattat gtagtccaag tgggagaatt gttggaattt 6721 ttatgtgtgg acttacataa tcaatttgat aatatcataa atcaatgtta atttattttt 6781 ttgcattgtg gtccataatg ggactagaca catattgtta cttgattttt tatgggttca 6841 ccctaattca cttgactggc ccattaagtc aagtggtcca aataatatgt gtaatgtgta 6901 atatatttat gaatttattt acatatatat atatatgtgt gtgtgtgtgt gtgtgtgtgt 6961 gtgtgtgtgt gtgcatttgg tgagactcct ccttttcctc tcttggagag cactacacgc 7021 acacacactt gcacttggac tgaatttttg gggaggaaag ggaagaactc attgatccct 7081 aattctcgta ccatcacgca cctggagcag cttcttagat attagaggaa gaagaaatgg 7141 ctttccatgg cataaaccaa ggtaactggt tcattttttt tccattaaat gcatgcttaa 7201 atgttaacat gtgatcctat gctatttcaa ttctcttctg ggttgccctt aggtttggat 7261 tttcagtgac acaccctctt ggtaacggta ttctggtgcc tctaaaagtc aagttgtaaa 7321 tgaaatcttc ggatctcatt atcattgtat gttggatgaa aaccctgaag gaggaggaga 7381 actagatttt tttattataa taaattggat aaggaagtta acttgggaag agtgggttgg 7441 aagttaaaaa gttagtcaaa catggcatgg aagtggggag ggtaaagagg caccttcttt 7501 aatgactttt caccaaattc atggcaacat tatctaatga tggagttcac cgaagaggcg 7561 gtttgcagtg tagaaatttg gtacttgctt gtgagtcaga ttcttggatg aatgtcgtca 7621 tttttctagt gttgtgcact agtcgattct tatccacatc aattgttttg ggattagctt 7681 gttaagtata gtttctatag acaaataatt tttacattcc ttttgtgttt tatttgagac 7741 ataagattaa tgtttagagc gaaaaaaact ttcaaattat aataaacttt gaatccaaca 7801 taagaaaatc cataaaatta tataagattg taaaaagagt attattaatg taaaatatac 7861 agaatagaac aaacacaact aaaacgaaaa aaaaaatgaa aagaatggga aagtgtattg 7921 tgtatcaaaa tcagactaat catagttaaa caatattata atctatttaa atttctacaa 7981 aaggtggaga cttcattggt caccatagaa gtttggtaat gtttatcact ttcgacttct 8041 ccaaaataag tgttgctcca atctttgtct attccaactt gtgttttttt acaacatgtt 8101 tccagaaaat agatcttgaa ttcttcatat ttaaaattct ggtttctaac ccacattgtc 8161 aatgtgaaag actttgttct tgctctgcat tcctccaatt ggttcatttt aagtgctttc 8221 ttcaaaaggt caacatccaa ttctactttc tccaaaccaa aaaactttaa ctactaaaaa 8281 ataataattc tagaatggtt cacaacaaaa ataacataaa tatttattca aacaaaatta 8341 ccaaatcatc taaaataaaa actaccattc cttagaagta taatgtcttt gggtttccaa 8401 aatatttaca actttttaag aataaagtcc ccttgcacct agtttcacat catgggctag 8461 ataataattt ttctagcgag atatatcgca tgattcctct ctccttcgat gcctcatgca 8521 attttctgca actacaattt taaatttgaa gattagtctc tatttataat atagtcatat 8581 atctatatac atacaaaaaa aaaaaaaaat caaaggcttg atgcacacca ttttctggca 8641 ttgaagaagt tcgttgatga tgtttttgca actcaaatca tgatatcaac caacatttct 8701 attagaagac actaaagagt gtggcaaatg agaggattct tcatttctca aaacgcaaag 8761 agatgaccta atgcaatttc catatgggat ccgttgcaac tccctcacca agcttgaaga 8821 aaaagaaaag aagtgggtaa cgacgtctaa cgggaaaaac acaatttaaa ggtgattagg 8881 tgcatgaatg aagccattat gattggatga gttgcagttc atgaattcat ttaaatttta 8941 atttatttaa taattaataa tatttaaaac aataataaat ataaaaatta cttaatgtgg 9001 atgaacaaat tagatataaa aaaatttaat atgatcaata aagtttaata ctcgagaata 9061 aaatattata taaataaatt aaattaaaac ttaaaaaaat atttaattta gatttcaatt //