LOCUS AM447613 10123 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X214927.10, whole genome shotgun
sequence.
ACCESSION AM447613
VERSION AM447613.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10123)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10123
/organism="Vitis vinifera"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(2909..2982,3205..3231,3313..3538,
7155..7247,7804..7896,8015..8182,8287..8448,9855..10010))
/locus_tag="VITISV_008044"
/product="hypothetical protein"
/note="GO:0016301 GO:0004143 GO:0007205"
/note="partially similar to EMBL:AP008208"
/db_xref="GOA:A5B5T0"
/db_xref="InterPro:IPR001206"
/db_xref="InterPro:IPR016064"
/db_xref="InterPro:IPR017438"
/db_xref="UniProtKB/TrEMBL:A5B5T0"
/inference="similar to DNA sequence:EMBL:AP008208"
/protein_id="CAN76472.1"
/translation="MDTNQDSXHIRAQLEDEGSVLNSNLFLEHVGEXSLTLNSDGLSW
KLLESLHNEKDGLSCLGIKFISKSETEIKFSDVYAVEFINWGLIHESVLSNAGGCLIR
HESEMYRFTVHGVQRSKTRPSLLVLAVYTFGHKDLQMCHMWVNRINALLKMETGRPKS
LLVFVHPLSGKGSGCRTWQTVAPIFSHAKVKTKVIVTQRAGHAFDVMASISNEELNSH
DGVIAVGGDGFFNEILNGLLSSRLKAPYPPAPADFVHSVGSNDSVLVHDPNETDVETS
CENEDHSPLLSSPRSNPIELSNLRTEEGSCDRGSTDAIVIWYFLDLSCALLSWPWL"
BASE COUNT 3536 a 1772 c 1735 g 3063 t
ORIGIN
1 aaaagttgat atactgaatt ccttgttttg atgccaaaac atgagtcaaa caaaacaatc
61 catacccatg gtcaaccaga gaatatctgt agtacatcat gtatggtcca ttaaaacggg
121 gggagagctc tatgctattt aatcaacatg ggccctacgt tatacatctc ttggccttga
181 atcatcctaa gaaaagccta ttatacttgt agaaagggac tcttatcaag tatcaagtac
241 caagaacaaa agacctcaaa ttttagaatt ttttagtggc acattgccct ggattgtgtg
301 gcgagagaga aatgtcagaa tttttaagga taaggggagg acaacgacag gggggttgta
361 ggatttactt cacttctatt cctctttttg ggccttgtgc accaaggctt ttaaaggcat
421 tcctcttagt gttatccaac tcaactagct tttagtgtgt aaatcaaaag ggtttagaga
481 tccttgagag gaataacatt tctagtctaa accttttgta tagactcctt gcatagtaga
541 ggaggtcaat catattacga tcaagtttct ttgcaatcat gaggaggact cctcatcctt
601 ctcatgtttt cattaatata aatataaaca tctcttgttt ctgatcaaaa aatmaaaata
661 aaaaataaat aacagacagg cctcaaatgc caaaaatctt aggggcatgg ctatcaaata
721 agttctggtt ttcccattgg aatagaatag gccaacaatg tagtgttttg agccctgagg
781 tttctgacaa ttaaactatc cctcctgtga ttttaaaaat attattggct ttctttgtca
841 agagtttgtt ccctaactgt attaacagtg aatgagaaaa gaccaaatat ctctcagctt
901 tgaaaaccaa attgcagcat tttaagccct ttttcttcct cactgaaaac ccaattcttt
961 tctgtcttct ccagattttg aaaaccctaa atcctgaatt cattgaacca taaatctcca
1021 aattgtgaaa aaaaaaaaac caacaactta ataatccctt tcttcttgcc cttctccttt
1081 ctcctttcta agaaataaaa tactcttgca gccatggata gtgccgtgcg gacagaaacc
1141 tatgctcata tagccccttt ccaaaacgga taattaaata tatgtaaaaa aaaaagaacc
1201 ataatatggc tgtgttgaac acatgacttc tatctgcaac agcaaaggcc taaaagaaag
1261 aaaaagaaaa gaaaagaaaa aagaaaaaaa ggaattaggc tgcaagaaaa gacaaaaata
1321 aaataaaata aaaacaacca ctacaaggac aaacaaacaa acaatagcca taagttgagg
1381 attaattttg aagagttgag gaagaagaat tggattatga ttcctttgtg aggatagagg
1441 cagattaagg ggtcagagtt tgttgagggt ttaaggaaga aaaaaggtga attatggctt
1501 cctaggaaag ataaaaagaa aaagtgattt aggttttttt ggaattttgt tgctgatgtc
1561 atcattttcc atccatcagc acaatggttt ttcagtggag ggaggtcatt tggtcaatgc
1621 caaacctaga aggaagggag cataatttgt taaatcagaa gaatatgtgg ttgagaaaac
1681 ctcggggggg gggaaccatc cctaaaagga ctacttcaaa agaatctaat gatctgagct
1741 tcttgttcaa actcctgggt gctaatttct gcgacacata tgtcctttgt gtctgtttgc
1801 atgggcttca tgccttgttg catggcacct tggagccaga tacatatttc acaggtgtcc
1861 ttgggggtca gtgctgcttc atttctgttt taggtcagaa ctgagtgtgg catgtttgga
1921 ggatcagcac ttgactcaat taatccataa ttcagagcta aaagttccac actcggtttt
1981 tcaagttcta atcacttggg tagggacatt actttggatg acatactgtt tcaggaagcg
2041 tcaggtagaa tgttcccata ggtaataagt ggatgaccat tgttgttggg tagatacaat
2101 ttctatcacc tactgaactt cttggtattt gatttcaatt ctgaagcagt tctgaactag
2161 gaaatttaca aagccgtgaa agaaaattaa agtttcaaga tgttaaaata gtaccaagtt
2221 gaatttactg tgagagtagt tctaggttta gtgtctctag tattctcgag caggtttatt
2281 tttgtttttc ctaataaaat atttactaat aaatatatgt taacctttta cagattgatt
2341 atgttattgg atataggagc atccaagagg cttaccaaag agaagtgcac acactaattc
2401 acataagtca caagaatttc atcttcaaat ttatgctctt gtctgccatg ttttcacatg
2461 atttgtttta gtttttatag attgctatta gtgctctaat atttttcagt agtcatatga
2521 gagtcattgg tacttttagt gtgggtataa gtcacaagaa tttcatcttc aaatttatgc
2581 tcttgtctgc catgttttca catgatttgt tttagttttt atagattgct attagtgctc
2641 taatattttt cagtagtcat atgagagtca ttggtacttt tagtgtgggt agctaccaat
2701 ataaggcatt acaagtaatc aaaggttacg atcgtagggt tgttgttgcc atagtgtaag
2761 tactctttac attagttgtt agggattagg ttcattgact taatcgaaat acgatctagg
2821 agttgctcta cattgaaaag cataagtcac aaagaaaatg aggtagatgc acacctctta
2881 gaactatgga aattactgtg tgaataaact ataaccatgg ccaagacagc aaagcacaag
2941 ataaatcaag aaaataccaa atcacaatgg catcagttga acctgcagga ataattccaa
3001 atctaaaccg ttcatttggt agggaaaact tggaatcttg atctgttgag ttgtcaaagc
3061 aacagaaaaa gtasgagtta ggactccagg atgaatatag ttaattcyac caagaagatt
3121 gttaaagtgg agaaaaacgt ttagtgttct agaccaatat tgagtgtaat caaccttgtt
3181 tataaagata tggaataaac taacctctat cacaagatcc ctcttcagtt cctgtaattc
3241 cagatagatc agataaccgc ctttacaact ataaaccaaa catagaccct cacatttaat
3301 tattgtacat actgagattt gataactcaa tagggttact tcttggactt gatagaagag
3361 gagagtggtc ttcattttca caggaagttt caacatctgt ttcatttgga tcatgaacca
3421 gaacactgtc attactccca acagaatgaa caaagtctgc aggagctggt ggataaggag
3481 ctttaagcct tgaagagaga agtccgttga ggatctcgtt aaagaaacca tcaccaccct
3541 ggaaccacat taatttacaa aatcttcagt gtaggaatta tatatgacaa tatcaattag
3601 aaattagcat actgaaattt agaagagagt tcgaaaaact atcaaatgac caagcacttt
3661 aaagacatca aaccaatgaa caaataaagt tccccaactt cttggtcaat gtgaaagaca
3721 aattacaaag aacttgacct acatgaacta caaactagag tttgtgaaat gtgaaaaccc
3781 atacttaaaa ttatcaatag atgtatttcc aaaatttagg aaagtcgttt cttgtttgtc
3841 taacctatta cttgagatca aacatttgta atgctcttgg aatagttgta atggatattg
3901 catcttctca atcttgagaa tgtatcaacc atataaaagt tggcggttct gacagcttct
3961 ctacttgcaa gattctgtgt atgatcacat caatttacca aaaggtaaag gtacacaagg
4021 atacaaacct aacaggttgt gcaaacagag acaaaagggc gttgataaaa caaaagctaa
4081 ccatagaaag ctttactact aaattacaaa tctaaactga atttgtagaa atgaaaagtt
4141 tactagtacc ctcaaaaatt taagccttga attcaattac actttttgac gagtacaaaa
4201 agtaaggttt ggaaaccaat tgctttacaa atttatccac aaaaaattac tggattcgtt
4261 ataaggaata acaattcacg ctgtgcaaca tacaagaata tttaccactt ttgagcacag
4321 gtcaattaga ctgctaaact atgttctttg tagaagtgta acagacatag tgaccatctc
4381 ttttgtgggt tttgggagta cttttagagg tacagtactt tagcacataa cttgtctcac
4441 atttatctag atagtttggt aggaaagaaa tgcaagaatt attgagacag cggagacttt
4501 atacgcaatc tgggacctaa tatattttta ttcctctttc taggcctcta atacaacttt
4561 tgagggcatc cctctaaatg ttctacagct tgattgaact tggcatgtag gtcgaaaggg
4621 ttaaaaaggg agttgctcct tatttgggtt ccacctttat tgggctcatg caagttaaat
4681 tttgaccatt gtgcttttgg taatccaggt caattgggga ttgaaggggt gatcaaagac
4741 cattatggtg gttaaagctt tttcaaaact ggcaggagat ggtttaacca ccaaggtaga
4801 gatgttggcc cttttagaag gattgcaata ggctgggatt cttagccttt ctaacctaca
4861 actggaaggg gattctgcta ttttgatttc ttaggtgact aaatcagaga gagccatgga
4921 gttatgatgg atagctccac caaattttga atgttgattg caccttggac tgttcttttc
4981 ctaggtctcc ttcttcaact aataatgttg ttaagtcttt tagcaaatag aggaacaatg
5041 catgggttcc ttttataggg gattttttac acccgtgagt agtgttgagt tgcttttctt
5101 tacaatttca tgtggtgcac ctgtgatata aagctatcct ctaaattcta tcggagaagt
5161 tctctcattc ttcttttgat caaattttgt acactttgga aagatttccc atccttcatt
5221 tgtacttgaa aatttaatta atcaattagt ttgtttctga taaaaataaa taaataaaca
5281 actgaatttt gttgcaaaaa tttgaaaatc tttttttgaa atatgtatta attaatcaaa
5341 tccaaagaaa cctatgaaat gtctatatat gaactttcca tattatctaa ccgaattgat
5401 tcaaaatgtt atatggtatt ctttatgcaa ttaatagata tcagaaagct catggtaaaa
5461 ataaataaat aaaaacaaat taccattttg cttcatcaaa atagatagtt atctaaaaaa
5521 attttacctc tgtagttttt aatcgcaaaa caagttttta aaacaaaatt aacttccata
5581 atcaaggcaa agaagagagt atgatcaata aaatcccaag gaatttggca taaaaaaaaa
5641 aaaaaacaga ataacagttr gcccaaagtt caaagtttaa aacctcttag tatgttctac
5701 tttaagtgtt tcaaaaggta tatttgtaaa ataaatagtt tttggactta gtttggtctt
5761 cctttacttt tctaacaatt taaaaagaat ttgcatttaa ttttcaaatg ctatcaataa
5821 atttttcatt ataaaggaag aacttctgag tggcttaatt ttatacccag atttcatgtt
5881 tacaaccatg ctgctaccat ataacaaaaa tatcttggca ttctttggat ttcaatgagg
5941 aaaaggaaaa gaaaataatg aaagttcttm cttttttccc atccttttga catccaaaca
6001 ttagcctttt tttccctgaa atttttttaa aagtgcagcc tttttgaaca ctccacacct
6061 accaaaacca cccctctatc agggaaacaa aatggctttt atcctttaag gatgtttttg
6121 tcatttttgg aaaattaagt attgtgattg aagttgggtg attgtatatg catccataaa
6181 atttctccac atccccattc tttttcttaa ttttaacatc gtcatcttca acctcccacc
6241 caaccccaaa ccttatcctc atcttcaatt ttaaaagata aaaaaagaaa aaaatagata
6301 aaataaaaaa ataagacaga gataggagca gtgtgtgtat ggtgggcatc ttgcagcagc
6361 tctatggctg cactgcactt ctttctttct ttttttattt ttgttttttt aaattgcgga
6421 tgggacttaa attgaagggg gatatgaagg aatagaaggc gaggaaaatg acaaaaatgg
6481 tggagaaggg gatgagaaag gagaaaaagg aggttagggt ttgaggttga agaagaggat
6541 atttcataaa ttcagctgct caattttttt aataaaataa ataaataagg caaatgggtg
6601 caccgagaga ctttgtgggt acatatagga tcaccttgaa atttttgttt ctttggctaa
6661 agagagtgca aatgaccaaa acagggtgtc ttcctaaaaa tgtgaagcag cgagtatttt
6721 tatttagaag ttagtacctt tatcagtttt ctattgcaga caaagaatat actgcaaatg
6781 aaaagagata taaaaatagt gatatggaat gaaagttccc tcccaaaaat gagacagtga
6841 aaagcattag acaacaacag aacaccaaga ctactccaca caaagatcat tggtgaataa
6901 aactaggtaa ccaagttgaa cagacagcat aattcttctt tcaaattcct aagcaacaaa
6961 ttacaaagta agaaataaca atcttaaaat gtgaataagt tctgatgctg cacaggatct
7021 taatgctttt tcataaactt gcttaccaag cttcaatgat ctcaacagag caacatatgc
7081 tttatagaac taagaagtat ggaaagaaag aagagaagaa aacaaaaagc atgctaaaga
7141 atctcatgac tcaccactgc tatgacccca tcatgtgaat taagctcctc atttgaaata
7201 gaggccatca catcaaatgc atgtcctgcc ctctgtgtca ctatcacctg caggagttgt
7261 aaccagctgt aaaaggagga ccaggaaaac taaaagtgaa acaactattt catgcctctt
7321 ttaagttggg agtggtgtaa tcttaatttc tatgacaaga aaaatgaaaa ttaaaacagg
7381 aaatataaaa attcataatt ttctgacaat aagtaaatga atataatgta aacatggtta
7441 catttttggg catcctaact ttgggtsaaa actgccttta atctccagaa acacataacc
7501 ctggctctct ctagtagtga acatgtttac acaaaataaa ggaactgtgt ccagtcccac
7561 atacagaata aatgagaaaa aaaaattgak aatagatatc tttgtttctg gattctgaaa
7621 caggaaacat atcagcatct caagctcaga aacaatcaat agtcacccct atgcaggaca
7681 tatgccacaa tggaaatgca tcccaacata actaaatcca tgaaatgctt cccrttgaac
7741 tatatgttta gacttcactc atgtgtaata acagaatcat gaccaatgta ctagggaatt
7801 cacctttgtt ttcactttag catgtgaaaa tataggagcc acagtttgcc aagttctaca
7861 gccacttcct ttcccactca atgggtgaac aaaaacctag tcaagcaatt ctgaggaaaa
7921 attagccact actttaggtc cattgtataa accaaccaag aaagaaaaca ataaggccaa
7981 aaaattaaaa tatttaacaa atgttagaac acacaagaag gctcttaggt ctcccagttt
8041 ccatcttcag taaagcattg attcgattca cccacatatg acacatctgc aaatccttgt
8101 gaccaaaggt gtacacagcc aaaaccaaaa gagaaggtct agtttttgat ctttggacac
8161 catgcactgt gaaacggtac atctgcatca gtaaagatga tgtatctcac tttaaatata
8221 atcacatatg acctaataag gaataaagtt cataaccagg tcactaagaa caagaaatac
8281 aataacctca gattcatgac gtatcagaca tcctccagca tttgaaagaa ctgattcatg
8341 aatcaaaccc cagttaatga actcaacagc atacacatca gaaaatttga tctccgtttc
8401 acttttcgaa atgaatttta tgcccaaaca agataatcca tccttctcct agcacatata
8461 aaaagatctt aaacgttaaa agttaaacca ttggaccaac ctcagcaaat ggtctgaaac
8521 atgtcttaaa tagaaatgca tgaaatgctt ttgagaaaaa taaacgccta tcaagtagta
8581 gaagccagaa aaaagaaacc aataccttca ccagaaagaa aaaaggatcc agtgtcagat
8641 gattctttta cagtctagat gtttggaacc acttgcttaa ctagttatta agtaaaagga
8701 aaataagaca acagtacctt tgatatgttt gatcctattc attttcatta attcttatag
8761 aaagaagtat tgagacccca ttgcagaaga tcaaacagaa caccctttgt gaggtggcag
8821 gaagcctgtt ttgtcactat aatgaatctg gtgtcatagt tatgtttaat aacataaaac
8881 atttctttag atgctacact gacacgggtc ctttttgtcc cccactcccc tttgcagcag
8941 gtaaaacctg gaccacataa ctccttgagc agcagctact tcataatgat tkagctcaca
9001 gtttgccatt ggttgttggg ttcctaatcc tcatcttctc caggctatgg atcggttttg
9061 taaagaaatg aaaaccaaat gcataactag aatttatcaa ctacatttaa gcatgacact
9121 ttcaccaatt ctgtgcagct ctgtatgtat acttaaccat atggaatcca gctcagcaag
9181 atttcaatcc agcctccatt ttttttattt tttgggtcaa aattttaata tttgctatar
9241 ggaacttcat gtttcagctt gaatttgctg aaccccactc aaaaagaagt ccaagaatca
9301 accactgagc cagcctacat gtatttcaat gataaccatg aaaaaccctc aacttaaatt
9361 cacagatccc aactcaagaa gtccaaaagt aaaccatcag tttatcccac acttctcata
9421 tcatctaata gatatgtctg ctacgtgtgg attgcatcaa gacagccaga gtaaacggat
9481 ttaagtttac agaagccact tgattgtaat tgagatttca cacaattatg ggagatttyt
9541 ccaacaaaag aatcaagaaa tggtgatacg ttgtaatcac aaaacataaa gatgaacaat
9601 ttagaaaaac ccattgggtt gatcaatctc acagccacaa aactatgtta ttatctatgc
9661 aacagaccaa aaaacaatcg acaaagatca gaatacttca accgggatac aattttgaaa
9721 ttttttctac cacccatttg cccaattagc ctaataacta caatctatgt caaaaccagt
9781 agaatgaacc aacaaaaata aatgaataaa taaataaaca aacaatcata gtgtaacaca
9841 taatcaaatc ttacattatg taaggactcc agcaatttcc aggacaagcc atcagaatta
9901 agagtgagag agamttctcc gacatgttcc aagaaaagat ttgagttcaa aactgatcct
9961 tcatcttcaa gctgcgccct tatgtgarga ctatcttgat ttgtatccat ttgtgagata
10021 tgaagttaca taagaattta acaaaacctc aatcttgtga ggatatcttg aaattccaga
10081 tgaacatcca aaattgggtt ctaagattww wagcaratgc cca
//