LOCUS AM445813 10816 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X177940.8, whole genome shotgun sequence.
ACCESSION AM445813
VERSION AM445813.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10816)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10816
/organism="Vitis vinifera"
/chromosome="9"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS 3455..3877
/locus_tag="VITISV_042672"
/product="hypothetical protein"
/note="GO:0005506 GO:0046872 GO:0004497 GO:0016020
GO:0016021 GO:0006118"
/note="partially similar to EMBL:AP008209"
/db_xref="GOA:A5B3Y7"
/db_xref="InterPro:IPR001128"
/db_xref="InterPro:IPR002401"
/db_xref="InterPro:IPR036396"
/db_xref="UniProtKB/TrEMBL:A5B3Y7"
/inference="similar to DNA sequence:EMBL:AP008209"
/protein_id="CAN69662.1"
/translation="MYPAGPIIPHESSDDCVAGGFRIPRGTMLLLXJWAVQNDPKVWE
EPRKFNPERFEGLEWXKXGLKLMPFGSGRRGXPGEALAIRMLGLGLGSLIXCFDWEMV
GGGMVDMSEGTGLTLPRAXPLLVKCSTRPALVNLLSQI"
BASE COUNT 3881 a 1530 c 1546 g 3795 t
ORIGIN
1 ttagttattt agttagatgt tgtaataaaa ataaatatta tntaanaaaa aaaatagttt
61 ttactatgat gctactatat attacatttg catcataata gtatatataa tgatgaaagg
121 aggtatgtaa tggaaaaaaa cgatgaatta agaaagacac aagatcccta gtgtgaaaga
181 tacaataatt tacttaggaa aggctttaat agagtgcatt tgagtacaaa cgtgtaactt
241 tcaatagaag tccaataata atagtgaatt atatgattgg atgttctatc tccaatagca
301 ttttatttta attactttaa aagaaaatat ttagattaat gtttgaatgt ttattttaat
361 atattttaac atttgattat tacttgttaa ccccgttgag tgtaaggcaa acctactgag
421 caatttggaa atattcatcc attttatttt attttatttt tagatgtact catggatgga
481 ttagggaggg tttcaaaatg tctagaggtt taggagctga ttaaaaatgt tggtgttcac
541 ctatattaaa cttttgaata tgtattcatt tggtaaattt gggttcatgt aatttaatta
601 tactttcatt gattgtaaac aaactgtgtg aatatttgat ttagaaatag ttataaagac
661 tgtgatgatt atcttagttc gatatgaata acacttataa ttagctagta aaagttaatg
721 gaaggagaaa aaatcattta attgaatttt tagtttagta attcttagga tccaagtcaa
781 aattcttaag atcaaacctt tgacttggaa gcatgaatcg aattttgggt aatcgggtta
841 trgtaaatct ctttctcatw gytgatcacc ctcgtaacaa ctaacaaaaa ataacacttc
901 aactacaaaa acgtggaaga caagtttcaa aaggaagcaa ccatattgta attcaaaatc
961 accaaagtct ttcccaggta ttaggtattg attcaacttt aatttttttt atgatcacaa
1021 ttaccatgca ttttccttca ctatatatgt ggtattggat gaactatgtg tatgttcatc
1081 tttttcacaa ttcaagatca tagttttcta atataataat gaatgtagtt ggctcaaaac
1141 atatttgata actttttgat agaaaataat tttttgagat cgtattttaa aaataaattt
1201 taaagtattt tctggaatga ttttaattgt tttcatttat tttcgaatgt tttcaaatga
1261 ttattttaaa ataataattg taaaaatata gaaaatgatt gaacataaaa cattactgat
1321 attaaaatat ttgaaaatat agaaaacagt tcaaaaatat ttcaagtttt aaatagactt
1381 ttgtattaag aaacatcata caattattct taaaaattac ttttttaaaa cagtataagt
1441 catggtaaga tttagtggcc tttggcttcc atgcactgta aaaatttctt tacgtggact
1501 tgatcatcag taaagataag attcaacagc cttagcttca ctgtactctg aaattttctt
1561 caaattacat ggaccttccc cagttacacc agctatgatc aacaataatt cggttttgaa
1621 taagcgagag ttcttttaaa tatctttttg actcgaattc ataataaaat taatcaaaat
1681 gtgaatatat atattgtaac gacctactcc caatcgtata gatccaaaag gaccctcatg
1741 gttttaaaac gcgtctatag ggttaagaag agtccataga cacaacatct tcgttatgtc
1801 ccatgagatt atagggctaa acagataaat accctctatg gggccaaaca aacccccaca
1861 ccgagatcga agatcagctc tgataccatt tgtaatggtc cactcccaac catgtagata
1921 ttatctgctt tgatccactc ccaaccatgt agatattatc tgttttggac ccaacagggt
1981 cctcacccaa ccatgtagat attatctgct ttgatccact cccaaccatg tagatattat
2041 ctgttttgga cccaacaggg tcctcacgrc tttaaaacgc atctacagar ttaagaagag
2101 ttcatacaca yaatgtcctc tcaaacaaac aaacaccctc tacggggcca aacaaacccc
2161 cataccgaga tcagagatcr gytttgatay catttgtaat ggtccactcc caaycggrta
2221 gatattattc gctttggacc caatagggct ttcacggcct taaaacgcgt ctacttggtt
2281 aaaaggagtc tctacatata tagcgtcaga aactttcttc ctcatccgat gtgggacatc
2341 acaaacactc cctatccaat gtgagacatc acaaaaaaag aagataaaat tttgaaagca
2401 gttttctgtt ctcaataaga atatacaaaa taattttatg ttttttaaaa cataaaatat
2461 ggtgttttta gaaaatattt tttaaaattg tttttgttgt tttcatttgt tttttgagga
2521 tcattctaaa aacaaattgt ttttaaaaat ataaagaatg attaaaataa aatattatat
2581 ataaaaatta tttttaaaac atatataaaa acatagaaaa tatgtcaaaa atattttaga
2641 tatttaaaca tacatatgtt tacaaaacac aaatagctca aaaaatgttt tttataatta
2701 ttttttaaaa ctaatctcta atgttttgta gaataaaaat ttgtttgaaa atctgaaata
2761 tttttaactt atttttaata tttttaaata tattttaaaa gtaaatttta tatgtaktac
2821 tttattttta attattttac atgtttgtat aattattttc taaaacaatc attaagaaat
2881 aactgaaaac aacataaaac aaataaaaaa tattttatga aaacacttta ttttatgttt
2941 ttaagaatag aaaacaraaa ataattttta attgtcaaat aygttttttt tttttttttt
3001 tcctttttgg agaacaaaaa gttgttctca ttgtcaaaca agtctaagta tatataatca
3061 aactttttct ttttatcttt ttagagaaaa tagttattga acaggtctta agtatacata
3121 atcaaactta tccacctatt ctataatgaa tatctcaccc attatattaa gctatagaac
3181 atttatcata tcataaattt tccattatat atgatcatat ctctgagtaa gcaagcctaa
3241 tttgtaattt ctctttttat atgcaggctc tatgaagtgc tggaaccgat actacatcca
3301 caacactaga atgggcaatg tcactttcgc tgcgcaatcc acatatgctt aagaaagcac
3361 aaatggagat ggacaatcaa ctaggccaca acttgaagaa tcagatctaa accagcytcc
3421 atacctccag tccatcataa aagaaacgga acgcatgtac ccagcaggcc ccataatacc
3481 tcatgaatca tcggatgact gtgtggcagg tggttttcga atwccccgtg gcacaatgct
3541 acttcttamc mtatgggctg tgcagaatga ccctaaagtc tgggaggagc caagaaaatt
3601 caatccagag aggtttgaag gcttggaatg gragaaacwc gggctcaagc ttatgccatt
3661 tggatcaggg mggagggggt gmcctgggga ggctttagcc attaggatgc ttggattggg
3721 attgggktcr ttgattmagt gctttgattg ggagatggtt ggtgggggga tggtggacat
3781 gagtgaaggg actggactca ctttgcctag ggctcakccc ttgttggtta agtgtagcac
3841 tcgtccagcc ttggtgaacc ttctttcaca aatttaaatc aattaggttc gtatgttatg
3901 atcatagtat gcatatgatg gtattgttat tgaaataaat gatttgaggg tttactagtt
3961 tagctttgat tgggagatgg ttggagaaga gaccatgaca tgacccaagg gattggactc
4021 actttgccaa gactccactc tgtggctaat tgtatgcctt gtctgacctt gatgaattta
4081 ataaatttga atgtattgag tctgtattgc tataatttgc gtgtttgatg caagaggttt
4141 aagtggtttc cacagcaatt tatattctag aacaacttgg aataaaattt taaatatttc
4201 tttctttgat tttttaaacc tgagattgca cgattctcta gaatcctcta aggttgtgac
4261 taggacgggt tgaatggggt ttacaactaa cccaaactta acccaaatta agaaacattg
4321 gactcgaaga atcgatagga ttccctgctt cttacattcc attaccaagt catactcatg
4381 atcacctaag gtagcattag gagatgaagg tactggtcta tgtatactcc aaacggtacc
4441 tctctggccg ccctggcctc tcctctatgg atgaagatga agtcccaacg ttctccatag
4501 aaagtaaaca aaaaccctag gcattaagga caaggaatgg aatcacctaa acaattgaca
4561 acaataaaac cctaaaatct attgggcttc tatmrtaggc tacarcccca tcaaacaaaa
4621 catatctaaa tgaggaccaa ataaatacrt actaaataat atggaactgr aaagaaggaa
4681 agatcaaaga gttaggtaga agtagccaaa agaaaagtag gcctaacacc taaacaaagg
4741 acaaatagag gagaatccca acaatcaaga gaaagaaaag ctctctatag ctggaaaaga
4801 aaaaaaaatt ctaaggtatt aatggtgaca aaagtgtgtg actcgttata tatcactcac
4861 tttttaacat tgaaacaatc caatgatggc accaacccta atagttgtca aacttaggca
4921 acttaaagct taaagcagca taatcctcga cttgtgtgat gaagcgtgat gaagcctagt
4981 tatttgaatc ttgctcataa tcatataaat attatccatt ttaaagtaaa ggattcctgt
5041 aactttaaaa catgtttaca ttattaataa aaactcatat atatatatac atatatgatg
5101 tttgaaactt tttttactat ctaatatgag gcatcacaac ccacttcatt atgtaatacg
5161 caaatcccaa taacataaaa ctcctcaata tagaattcct tcattctcat tcttatttgt
5221 aattccttgc aaataagctt catatgacga tcatctaaaa cttgaatttt gcatccattc
5281 tagtggattc tctagggttc aactttagaa gtttggtaag cataggtatm aatgaaagga
5341 aaactttctt agagaagact aaatcatcaa artgtctttc ttagaaaaaa cctcttctag
5401 gattkatttt gttttagtgr tggttttgtt taagcttgct tgcgaagact taagataatt
5461 ctctaatatt tgaacaatta cataaaaccc taagggcatc tattacttgt tgctaagtcc
5521 aattccaaat tcaattacaa actgaagcct ctcgttggaa attccacatc atttctatcc
5581 caacaactca aatgggccaa gccctgctca tgattattgc aatattatct gatatccttg
5641 tctcttttgt ttttaaacat agagaagtaa acttccacat aagatataaa atccgttcct
5701 aatttttttc agtccctaaa ttctaaaagc aaagaattca atcaatataa tttgaaataa
5761 agagcaattt ttttcattca aattattact tgaacaaagc aagtgtctca ttgatgttaa
5821 aagttttgga acaactaact tgaatttact tatcatacaa gtaaactagt ggaagaatca
5881 atcacaaaat ttcctacttt catcatcttt ttaagtactt cgaatctacc gtgcaaatta
5941 agtctccgtt tcatcatact ttttgaaact tatttttaaa aattgttttt aagttaaaaa
6001 ataaatttta aaaataagtt taaaaaaaca tagtcaagta gatttatgtt tttcttttga
6061 ttttaaaaat tggtaaaaat aattcttatt gactctttaa aatttgttct ttatttcatt
6121 ttatttttaa aaattatttt ttttaaacaa cccttttaga aaaatttaaa aacacttaag
6181 tttttaaaag ctaaaaatta tttttaaatc aatgataaaa caaactctaa aatatttgaa
6241 aagtgacata tgtggcttcc tcgatctttc acttacacct ctgacatgca ctgacagcga
6301 cttcctccac caagtgcatg tattcaagtt tgatttccct tctgttcaag cttaaagatt
6361 atattttttt tttgaataaa atatatcaaa ttcacgtgca tttatkgtat gccttrgtgg
6421 atttcctacr gtgtaagatg tagtgcatat tgagtaggac ctgmatgtta aaaagaaagg
6481 cattgtaagc gcgcaaaaca atactagttt agagatgtct caattataag gggcatggga
6541 ggatgacatc ratttcttat atcttttaca tgtgatctct agcaagagtg gttattattt
6601 tataattttk ttatagtaaa taataaaatt tgaagtttgc tccatctttt cttttcaaag
6661 acttgtawaa gtgaaatcat gttgtgtgtg gctarttgta tttggttgat ttggatgtct
6721 aattwgctcc aaataaataa aagtggagaa gtagtttttg agtgttttat aattatctaa
6781 aaattatcat gataaaaaga aaatagaatt tctctctcgg aaagatctaa gaaagaatac
6841 attttctttc tctccctaaa aactaaaaaa atataatttt tctttccgaa aaaataaaaa
6901 tcatctttct tgaagcattt tttttttcta ttttttccat gaaaatgaag gtcaagacat
6961 ttctactgtg aaaataaaat gattcttgta ttcgtaattt tattcatgat ttggagtgag
7021 aaaattagcc agtaaaacaa tcaataaaca tttttaggca tctcgaaaaa taatccaaaa
7081 gctttatttt ccatcaaagg ttgtctttga tccacgtaaa taaatataat gtaaaaataa
7141 aattggaata tctttctttt attgaaaata caatatttat attatttttt ggttgtttgg
7201 cgaaataaag atggtattga aaaacataat tagaaaaaga gagattgaaa cgtgttttac
7261 acttatacta tctcatgaat atgtatatcc cacctaattg aaagagatgt ccaaatttca
7321 ttagtaggga atggaaacat atctagattc ttctcccatt ctatcaacat ccatacttag
7381 agtttttaaa tcttagccta cctccaaaca aacacaccct atatgtttgg cacgtcatat
7441 aaaaggtcta catagatagg taatcattta attctccatt caaataagaa tgaaattgaa
7501 aattttgttc catttctaaa tgttacaagg ttgaaaccaa ttctaatatt ttttttttat
7561 ggatgacatg tttgaataga atttttaagt tgcatcttta gggattagaa agagtattat
7621 tcacggaata acttatccaa aaatttctct agtttaatta attctaaaat actccataaa
7681 taaaattcaa caaagtatat tctaagaaaa ttagttggag aagcatttaa aaaccttaag
7741 ttgctaggaa tccgaatttc tctattccct catcttggat catattggtg aatgcaaaac
7801 taccctaacc ctctaaatcc tatgcaatgg aaggaaaaaa aacaattttt tattattatt
7861 ttagatcaag aggaaagtta ttagagcact ttatctatga tttggatata ctcaaatcat
7921 tatcgtttga tgaaaatgaa gaataatgaa tctgaaagtc ttatacactc aagatctttt
7981 gtccaatgac tcgaactacg attttggcac ttcaaagtat gggctttgga aaggaaaata
8041 tctttgttct ctctttctct acaggtggaa aacaaaatta ctaagaaatt ttaactcata
8101 aaaaggtatt tataggattg ttcattgggt ttaagtaact taagtccatc aagacttaga
8161 tcaattaatt gttttaatcc taactaatta attttttaga tcatgcaaaa gaaattagag
8221 taattttgtg actgtaatat gtttcctttt atgaaaagat acttggctaa taaacaatgg
8281 tactattcat gtgtagaacc ataatatgtg ggcttattca ttgattttat atctataaaa
8341 atgcgtttaa cagtgatttt agaaaacatt tctacatttt ctaatatttc aaaatttttc
8401 atctttcaaa tattaaaaaa aaaaaactaa aaacactttt taaaattatt atcaattcac
8461 tctaaatttc attggactag aaatgatact tctaatatta ataggtcaat tgtttcactt
8521 ttctatcttc caaaaaaagt tatgtgcata atagttatgt gcaaatatct atcgtattta
8581 gctctagagc atagtatatc ttacacattt taataattat attttaatta ttccaaatac
8641 atatttttct taaaacagaa gataacttgt cttgtttttg tttttgtagg ggtcacacta
8701 cacatggcat tattttattg ataaaaattt atgtcatatg tcaactttta attagtcaca
8761 atttaatttt tttttggttg attcataatt atcttaattt gaatgtacaa taacttatra
8821 aagtttcttt tttttttggg ggggaaattg tccaaaagag tggcctagga aaataagaac
8881 actaatgcct attcaccttt agttttttat tatacatttt gaaataataa aataatrctt
8941 aaaatttctt tttttattat gttataattt agtaaaaaaa tccaaaatat aattaaggct
9001 ttctaatgtt gtaattrttt tttatcctta attttatttg gaaacttaca acaaactaaa
9061 ttgatctcta acaatccytt ttcttaataa tcccttgata acttatttyt aaagtatcta
9121 gtcaataatg gtcaaggttt caggattagg catattatta agttatttta ttaaatatat
9181 ttaatgattt aaattaagtt attaagtaat tttaagttat taaattggtt tatcaaatac
9241 tcacttaata tatttttaat aatcacttaa aaaatttaaa aatttgagat aataattttt
9301 tttagttaat accttaaggg aggtagttga aattaatcct ttttcgaaat gaataatact
9361 ttatctgaag gtaaggtgag tattaataaa ataccaggga taaatagcaa tttatcacga
9421 gattttggtg agaataaagt ggaaggaacg agttgagtgg aaggaacgag ttgagcggaa
9481 gaagcgagtc aagcgaaagc gactaaccga gagccttcta gagagttcac ttatcggtga
9541 cgtgtacaaa ttgctcatta tattttcatg cctatccttt gttttttctt gacattttat
9601 ttttggttct agtgtgtgtt tcyttacgct ttgaggaatt tggctaaata tctctaattg
9661 attaattata atataatata atatatatta ctactttcat tgatttgaaa attcgccmaa
9721 tattawtttc cctaatttta aattagaggg ragatkrgtg kgaatwttaa atwtaaatww
9781 ttwaaaagat atttaggggg tgtttggtcc ttggaaagaw tagtgtgaat aaatatttca
9841 ttcattatct tccacattct catgtttaaa taagttttat aaagatatga atagaataaa
9901 aaatgatttt gacaaaaatc aaatctcact tataagttgg attttaattt cttgtaagta
9961 agaaaaaaaa tataaaatag tctaaaatat aaaatagttt aaaatttcta tattaccttt
10021 aaatttcatt catcaagatc cgatctcttt tcatctcata ataaagctat tttttagtct
10081 tattatctag taaaaaagaa aaagacaaaa aaaactctaa aatttacttt taaaaaaatg
10141 aaaataaaaa agttatttta aactatgtgt aagggtatta ttatcaattt atatcttttt
10201 cattcttatt cttaatatta tcaaacatta aaatgaaaac aaataattat tccaatctta
10261 aatttctaga ctcatccaaa cattaaaaat ggaatcatta aattcatttt catttatcaa
10321 aaaataagta tgaaaataaa atattcattt tcatttttta ttcctatata ccaaacactc
10381 tcttaatgaa atttcaactg atgagagtta ggtgtattta accaaaactt taggagaggt
10441 caataaaact aagccttttg agaaattgta aaatttgaca taaaataatt aactaggaag
10501 ggcaaatagt atgagtgagg catcaaaaaa gacattaaaa gtggaacatt tgtgatacta
10561 aaaaaacata aaaaggttgg acaattaagg cacgactcta acagaggaca taaaaaaggt
10621 agacagttgg atgcgaaact aaaaaaaaga tataaaaaaa ggttgaacac tctaagcatg
10681 acaataatag gaaaaagaag ttggacagtc agtgagcgac tctaacaaaa aggtaaaaga
10741 gtgaacaatt cataatattt tattcaaatg attttttttt agagatgatt atattttaac
10801 attatatctt aaaata
//