LOCUS AM442876 11048 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X055608.20, whole genome shotgun
sequence.
ACCESSION AM442876
VERSION AM442876.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 11048)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..11048
/organism="Vitis vinifera"
/chromosome="12"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(1859..2074,2173..2323,2696..2879,
3108..3318,3434..3552,3733..3955))
/locus_tag="VITISV_020080"
/product="hypothetical protein"
/note="GO:0004674 GO:0004672 GO:0006468"
/note="partially similar to EMBL:AP008214"
/db_xref="GOA:A5B111"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR001245"
/db_xref="InterPro:IPR011009"
/db_xref="UniProtKB/TrEMBL:A5B111"
/inference="similar to DNA sequence:EMBL:AP008214"
/protein_id="CAN67370.1"
/translation="MGLGKSLNQSPQGGLEKIGYTSSNGPPGNCYEVLNKYLIRHVLR
GQNGGSTTSIILICAVLYIKRKASYVNEDEEFLRIGPRPNTFSSSELQTVTEHFNPAN
KLGEGGFWPVYKGALNDGRVVAVKQLSVASQQGKSQFVAAIAAISAVQHRNLVKLYGC
CIEGNRRLLVYEHLENKSLDQALFGKNDLYLDWSIRFNICLGTARGLAYLHEDSRPRT
VHRDVKASNILLDAKLCPKISDFGLAKLGYLAPAYAMRGHLTEKADAFGFGVVALEIL
SGRPKSDNSLDTEKICLLEWAWTLHENNRSLELDPTMTAFDETKASRIIGVALLCTQA
SPMLRPTMSRVAAMLAGDIDVGIVTAKPSYLTD"
BASE COUNT 3407 a 1917 c 1901 g 3776 t
ORIGIN
1 ttattaatat atatatatat atatatatat atatatatat attgtaggaa tatcacattg
61 caaactcatc atcattatat acctttctta tcattcaact aaacaacctt taatcgtaat
121 aatatgtaat atgggttggg ctagaccata tagtactttt tttatcccta aaaaatatat
181 catcaaatag atgttgttat gtacacaatt ttatatctta ttttctatat cctaattcca
241 tttatttgta attttgtatt ttaatctctt ttatttttat catacattgt ctaatgactt
301 agattttgtt atacatgttc aatgattcag attttttatt taataggttc cattatggta
361 ccttagtatt aaaagaaaaa aaaaacarag aaaaaaaaaa aaaaaaaacc tcggagacta
421 cagtgactta gatttaacag ttgcccagag aattaaattg aaggcatttt ttctaagaaa
481 ctgtaacatc tctacatagt atttacagat atttaggtaa tttggatatt aatctaattt
541 ttttataaaa aaaaaaaaaa agagagagag agaaagaaaa taagtaagat atttttggaa
601 tgttgaatta atgagataaa ttgattaaag aaaattaaaa acacaagtag ccaattgtta
661 actggacagt gagatttgtt gaaatctcca gagtgtttgg ccttggaaca gaggggaggt
721 aacctaaagg agatgatccc atttcacacc tattaatatc ttttgtgcac acaagatctt
781 catataatcc aaacaattga aataccaaca tcagacttca taacacttag caagcttcga
841 ctgaacctca gctaacctat ccaaccatta aggttaggct tatgcaggta tataacccga
901 tgtaaacctt ccgagttata gcactaatta ggccacaaat gtaattaagt ataatctttt
961 tattatcata agtaatactt accttctcgt tatcttttca agaagctgcg tgtgcttgca
1021 ggaattctca acttgagttg gtgaagctcc agttcaaggg ttgagtacct gtgcaaatgt
1081 tgtccacgat tctaatatga aattggcata taatacattc aagtatgatg gtgttcaaac
1141 attaaaatcc tgaagttgtc aggaactgga aaatgcgtcc aacactctct ctggtatcts
1201 actcwatsta cakstmacts tmtscaacca wyaaggtaag kmyyaagyas kkatakaasm
1261 mgawrkraac cttccgartw akarsaytaa tggagctgca aatgacagta ggtacaatgt
1321 taccgcaktg gcggaaccaa atcaccttcc ttctccagtc gttatctttt caagaagctg
1381 cgtgtgcttg caggaattct caacttgagt tggtgaagct ccagttcaag ggttgagtac
1441 ctgtgcaaat gttgtccacg attctaatat gaaattggca tataatacat tcaaktatga
1501 tggtgttcaa acattaaaat cctgaagttg tcaggaactg gaaaatgcgt ccaacactct
1561 ctctggtatc tcactctatg tacatgtcac wktctgcaaa acaagaagta ccaagtactg
1621 atagagaaga aaggaacctt ataagaagat taatggagct gcaatgacag tggtacaatg
1681 ttaccgcagt ggcggaacca aatcaccttc cttctccagt gatctcatgg agcattgatt
1741 cattgggatt aacaggggaa ggaatctgat cagttgtatt atcatgcttc tggctcttag
1801 atgctatgga tgcctcacta tcttcgttca aaaatctgtt tgttatgtct ttgaaatctc
1861 aatctgttaa gtaactgggt tttgctgtaa ctatgcctac atcaatgtct cctgcaagca
1921 ttgctgcaac acgtgacatt gttggccgca gcattggtga tgcctgggtg cacaagagag
1981 ccactcctat gattcgactg gctttggttt catcaaatgc tgtcattgtt ggatccagct
2041 ccaagcttcg gttattttca tgtagagtcc atgcctggaa acatatagaa atgaccatga
2101 acaaggaata agctatttta ctaatattat attgggaaag agagacgaaa atgagaagtt
2161 attttgctat acccattcca gaagacatat tttttcagta tccaagctgt tatcagactt
2221 tggcctccca ctgaggatct ctagagcaac aacaccgaat ccaaaggcat cagctttttc
2281 tgtcagatgc cctcgcattg catacgctgg tgctaggtag ccacttcaag attacatcaa
2341 aatagcttct ttgaggttaa ttcaatgaag gcttttaatg aggcctatgg atttaaataa
2401 aaaggcttat tccaaatcta aaaagtccag gagatttcct aaaagaggaa tgaatttgca
2461 ttgaatttga atttggtaac agcaggtatc agaaccaatc ttttcaatat aaaaataagc
2521 catagaaagt gtcctttttt tgaggcatgt atgaaggcta tgtatatagt ttcacttaga
2581 tatagaccat agtagaatac agatgtagca atagaatggt tccgtggaaa cagttgaagg
2641 agctcacatt gtgcctgcaa ctcagctgct gatgtgtgtt ttcttgtcat catacagctt
2701 tgccagtcca aaatctgata tttttgggca gagctttgca tcaaggagaa tgttactagc
2761 cttaacatcc ctgtgtacag tccttggcct tgagtcttca tgaagataag ccaaccctct
2821 agctgttcct aagcatatat tgaagcggat tgaccaatca agatacaaat cattttttcc
2881 tacaagcagc ggcacccatt tgattaaaaa caaattaaac tagcagaaac gatgaaaatt
2941 ttcagacaat tgtagtcatt ctagattaag ttacagcaaa gaataacttg aatttaaacc
3001 aaaaaaaaaa aaaaaaaact ggggagtgct caagagtaca aagatttttt tttcctcccc
3061 aaaggttcat agaaatgcaa gatgaaaagt attctaaaca tccataccaa agagagcctg
3121 atctaagctc ttgttttcaa gatgttcgta aacaaggagc cgtctatttc cttcaataca
3181 gcacccatac aacttcacaa ggttgcggtg ctgcactgca gatatggcag caatcgctgc
3241 cacaaattga ctcttccctt gttgagatgc tactgaaagt tgctttacag ctactaccct
3301 cccatcatta agagcgccct gtaaaacact aaaattcagc gacataatac ttctggaatt
3361 gtttaatgct ctcattacaa tgagaaaagg ttatgaaatg caatacatta ttggtaagta
3421 aaattaagtt taccttgtac acaggccaaa atccaccctc ccctagctta tttgcaggat
3481 tgaagtgttc tgttacagtt tgtaactctg aagaactgaa agtgtttggt ctagggccta
3541 ttcgaagaaa ctctacaaat tcatggaaga caaatgttat tgaaatatct gtacaatttt
3601 agataatgtg catttcattt tgtagaaagt gatgtccttc atatgataga aaaggttgtg
3661 tctaatcttc tgtgttgcaa gcaagcacca gacttcttag ggttttcaaa ttccaaagta
3721 gagcagaagt accttcatcc tcattgacat aggaagcttt cctttttatg taaagaactg
3781 cacatatcag tatgatgctc gttgtagacc ctccattttg tcctcttagc acatgtctta
3841 ttagatattt gttcaatact tcatagcaat tccctggtgg cccattacta ctcgtgtatc
3901 ctatcttttc taagccacct tggggacttt ggttaaggga tttacctaat cccattgtga
3961 ctcttggcag ccttatttag accataggcc tacttaggca ccttagtgtc acggattagt
4021 ctttttctaa gcttgtgcag cacttagaca agtcaagaca gttgatcttg ctaagtcagc
4081 cttattccca atgcttagct tgctaggcta agacgctcgt gactcggaag ttttagaaaa
4141 ggagtttaca cctaaaatca aatgcttctt gtgtgacggt ccacattagg catgggatta
4201 tccaaagaag aaggcgctca gtgccatgat cgaggagagg gaataggagt gcgaagyaca
4261 tatgagctcg atscagctgc taggtgccct ctaagtcaac ctaaagccta gtacacctaa
4321 gacctccttg ccatcagggg tgcaagtaaa ggagacaaaa ggggagcgag ctgaggtagc
4381 ccacacacac atggacaagg tcactaaggg aaagattaac ttgatggaca agaggaagca
4441 gcactccaag catcaaaagt gcaagggtct atatccatcc aaggcctcac aggaaaagga
4501 ggtgaaaaat atcctggctg aacgggttac caggagacaa ggggtccctc atttgataga
4561 gtatctagtc cgatgaaaag actacctaag aggcaggtaa gctgggaaca tgtggattcc
4621 ttgagaagat tttggggtcc ctcctttgat agagtatcta gtccgatgaa aagactactt
4681 aagaggcatg taagctggga acatgcggat tccttgagaa gattttggaa acacatcgag
4741 aggttttgaa aagaggcaac aacagggacg tcgatagcat aggtgggaga gagtgtcaca
4801 agatgcttca aatgacctcc ccatgggctt atgtagagcc caagaagttt ctagagactc
4861 ctagagccat ctacactaag ccattggygg aaagagtgtg gaaggttcta gaaatgccta
4921 aagatgtcca cacatctcta cactattgtg gaatgcatga gaggagtcca aggttttcta
4981 gagaattcta agaatctctt gtatattctt gtacatacac tactacaaaa aatatgaata
5041 atgacgtttt ttttcttgac gttttttaaa agcgtcaata tttaacctac gtggcaacat
5101 atcttggcgt tttttaaagc cttgattaac aatgatgctt tgtggagaag caatgacact
5161 cctattcaat ggcacctgtt acaaacgtca ttgattgcag aattgttgga gaccttggcg
5221 ctttatttaa gcgtcaataa ataatttctt ccttgtccca cttttaaagc gccatattcg
5281 aaaacattat atatacatat gtgaaatttc tgccaaacac acaattccct ctaaaatttc
5341 attctcacac ccgccttatc acctaaagat ctatgaattc tcacaccctc gtttatcttc
5401 tatctatgga cactcacacc ctaaaaagct attaattatc tcaaaaaccc taccctttac
5461 tctcagccat cttcaatttc cctaaccccc caagagccca taactttatc ctcatcatca
5521 tcgataacct cacatcccaa accctaagcc tctcatttct ttgttctcac catagccgtt
5581 gagagctact aatgccgaaa tagagaagct tgaagtccac cactagccag ytagttatca
5641 atggcattaa acatcttcta agcttgaaay agagatgctc aatggtaact ctctgctttg
5701 aattttattt tttttgggtt tatctaaggt tagggcttgt atgaagattg tttcatatgt
5761 gttttccccc ttttgtgctt tactctttta atttgttgtt tctgaaattt attggggttg
5821 atttcggttt tgattttatg tttgggtttt attattttag attcatgtgt ttgggacgaa
5881 ttctagtttt ctcattgata ttttaggatt gattttaaaa tgcattgtgt ggctttgaac
5941 aatacttcta gggtttgaat tcaagtcagc gagattgaca caacaatttg aacctgtgtc
6001 tagagatttt tcaatggcaa gtttgagatt ctgctcttca tgacgtgaat ttccctagtg
6061 cagtctttta gaaaaaatga gtttattagc atggacattg tccccatggg ttctgagtat
6121 ccttctgttt ccattttatt ttttttgtcc atcaccatga gccttgcctg gggcaaagac
6181 gttggttgat gtggagaagt ggagagtttt tatccttctg attgtcctaa ggttgatttc
6241 tgctgaattt atttttatct tattttttta attattgagt ctatgcataa accagagatt
6301 tccatttcat tatttactag aattatggta cggagatgac aggtgccttg aaccttcagc
6361 cactggttgc ccaaaagaaa aatgaaattc acatatcttt tccacatttt gtaaccaaca
6421 aaaaaaaaag attaattgat ggagagttcc aatgattaaa atgtgcataa tctttgctca
6481 tggagacatt attatgaagt gacaaaatgt gggcatcaac ttagaagttg agagtacgaa
6541 ttgtggctga aatatgttgg acataatgct attatgaatt tataaatgtg cacaaaggtt
6601 actttataaa ttataattaa atttgtacgc attataccaa aagctataaa aatggtattt
6661 gttaaaaaat atagtacaag cccctataat ttttttgtta aaaattacat taattatctc
6721 ttaactcttt ttttcaatgg attatttcag ttctttaacc tataaaatca tatctaaatt
6781 aacaatttaa atctagctat tactatgttt tttatatgct tttatcacct ttttaagtat
6841 taaaagaaat ttcaatttaa aaaaaaatca aattcaaaat aaattcacca catgatatat
6901 tgagtattta attaactttt tttttcaact atggctctct rcttagttgc actggttgtg
6961 atgctcagaa actctcagac caatgacttt gacaacctct cctactctaa ccttggagcc
7021 ttcaggtact attattccat tcccatctca tttccttgtt atgtgtagtg ttattcatca
7081 tgaatgggtt tcagatatta ctttttcata ctgcagaaac ataaaaatta accactttgg
7141 acttcattca ttttcaagaa ataacattta gttttttttt tgctgtttga tttttcgtta
7201 attttcatga cttgaaaagt tatgaagggg tctcatctta aggtttcttg tatagaaaat
7261 catgcacttt gattcctatt acttgttcta tttgtttaat tactcagtgt ggagattttt
7321 ctggatattt acatgactag tcctaagagg gtttgctttg atctactttt attcatttca
7381 tttagatcac ytcttttgag gtttcataag ggtttatgtt tctgagtttg cattttctta
7441 gttaggagtg aattaaagtt ttcaatttat ttctaagtat aaatagaagg gtggtttaaa
7501 ggatctcagt tggggacacc taacataagt atccacctca tatccatttc tatttaagta
7561 gaaccacccc ataattattg gaaccccatt cttaatcaaa atccaactac tgcaattagt
7621 tcacttgaaa gctctagtat tagctagagg tgtgcatgca aatcaactta tgaagatttt
7681 tccttttacc ttttcttttg cttttctcaa gatgatgatt gttggtgtca tgcaagtatc
7741 ttgtgcatgc taatggaatt tgtgttggct actcccttct ttcaattgtc tttagagttt
7801 tctttgccct tctgctgctc gggtgttgat gtttgcttgg actgctagcc acagatgaca
7861 atagatatta aagtgattga tactccctca aaggtaaggt atatatgtgt atgcattcaa
7921 ctgagtataa tgtgttcggt cttgtcttaa acatttcata atttcttttt cctctggttt
7981 cttatatgta ccacatctaa agatttggat catacctcaa tcatcttcaa gttgaccaat
8041 gaataaaggg ctgccattgc tgattatttt caggtttaca aggttgaata tcactatttc
8101 tgaaatattc taggaaatct agtagttttt ttttatgtca ttgagttcag tggaagttgt
8161 tgattccata tttttcttag ggcaatgaaa atagtcagaa aaaagtttct ttagtgggtc
8221 ccactctcca atccttcctt gagtaagtgt tggtatttgt tacttcccta acccaccacc
8281 tagaaaagaa aatgtttctt gtattaagac aatccaagct ctacaggcac ttgcatactg
8341 aagttttgag gaaaggtctg aacttgacat tgtcataaat cacttgagta aatgggaagt
8401 aaaccttgtc aatattgatt ttcatgagat atcctacaac aagttgtgaa gtgtacatct
8461 tgagaattgg aaaaggaact tcgattttgg agatggttgc agcatttgag aagacatttg
8521 gaaaggtatt aaaaatataa akttttgtat ttgagtctgt tttggttctc tagattactg
8581 aatgtatcta tatttattat ttttaaaaat tttgttttct tcatttgagt aattgtttgg
8641 agtattccat tgactacccc aaattaaaag ataagacatg tagttattat aatcacttgg
8701 gatctgcttg gtttggcaaa ttaaagtggc atgtggattt gggccttaaa ccccagatac
8761 tatgtctaaa rtttgactat caagagtaga gtacgagtta ttcccaatcc taaagtttgt
8821 atgctcattc aattgagtgt tactgagaag attagaaact tggcacagag taaaataaat
8881 ttctggtgca aagtgccacc tactccatta ccacttcctt caccatccta agaaatacca
8941 taattctaat tctgcaattt ttaattatta gatatattta tttcttaaaa ttgggcatat
9001 taggattgac caatcttcta agcttcacga tctgtaggaa aaatattatg ccaattttct
9061 tactagatat atatcatttt attggtattg agggtttctt ctcaattatc caaatagatg
9121 cttttttttt ctttcttttt tttttttgtt attttcttgt tccaaaaaat tcctctggtc
9181 atggctagat ggagacctca tgatggtgag attgtttatg cattaacaac caaagtagaa
9241 aaagagttaa aactggaagt aagtgctaac ctacatatga atgattgaat tttatttatt
9301 ttttattttt tttaaatgca aaatttcaaa tacctatgtg attcccatta aatactaact
9361 caccttacct tcatgcaaga gtatgtctag ttatacattt tatataccta tattatttta
9421 ttttgtgtta tccattcctt gatccaacat ttgggttggg aggttgcaag agagggactt
9481 ccctagtact ctagcaactg tttgtcatca cttaaagcaa aaaaaataga aactagagtt
9541 agaaacaaaa agttagcact taaaagaaat catttgtaat tcttatatat atatatataa
9601 attcaagtaa atggaaaata agttggaagt tttttgcttt ctgatgtgga aaattaaaat
9661 ttgagttaac ttagggaatt gttggaggct tcatagatga gttgatcatt ttgtttaatc
9721 aggaatggga ataagggaaa gtacgaggtc ttaagttttc ttattccttt cttttggttt
9781 ctctgcaacc aaatggagtt agtgtttgga attgcatttt agaattgata ttaatgtgga
9841 ttatttcaat gtagaaatta gaatcacttg aatttctcga ggaactatgt tttatttatt
9901 taattaattt ttgacaaaga aattgttcat aatagctgtc ttttttttag gttactgtgt
9961 tccttatggt tgctctggaa gaaaaatcta gggtaagttt tcttagatag cacataataa
10021 aaaatctatc caattctact caactcaact caaacttatg tagtcacatc ttatgaggcc
10081 ttaatttgaa atccaaggct taaaattctg atctctttat tttttttctt agtaattgag
10141 tgagttttta aattcagttt cacttagaaa tcaaaatttt gaaacaaatt ttcccaaatc
10201 ccatatttga agaatttcaa gactcaaaat ttgtagtcct tcccacaatt ttataagcaa
10261 ttgatcaaaa agagctttgt tgaaatttgg atccttagtg aaactttttt ttttttttgt
10321 ttcttgtcga agcaataccc tagtacaggt tccttttctg gtattctgga aggatgaact
10381 accatggact aaacatcaat atctactaca ttgattagtt gtttgcacat acaatttttt
10441 ctattatctt ttaaaaaatt aggttttcta ctgatgttta atttcattta gtactagtct
10501 taagcttgac aaaaatcaat gagtcataca aaaagtttat ctaaatttgg tttatcaaag
10561 gatctactgc tttcagatcc cgaatctgag gtagacaaag atgatagcat acacaacctc
10621 ctttgatgaa cttgcagaaa ataatctcca gtataatact attatatgga tgtctatttc
10681 attgctcctt gttttagctt ggggagtagg aatcattgtg ttattgtatc ttcccttcaa
10741 gaaatatgtg cttcataaat atatttcgtc ctataaatca catgttacat ctactcaaac
10801 agtatacaag gtgtacatga ttttttaaaa aataattatc attttcttag attttccgtt
10861 ctattgtgca gcataaaact ttacccgtgt aagacatgct tcatcacaat attcctcaaa
10921 ttctcagcgt acactgtgac cttatgccac tgaacaacac ttggattagc gtactccttt
10981 cgatcttcat tatccaatgg cctcttattg ttccaaatcc cacctgttac aatttgtcca
11041 ctcctcag
//