LOCUS AM441995 10910 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X037881.7, whole genome shotgun sequence.
ACCESSION AM441995
VERSION AM441995.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10910)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10910
/organism="Vitis vinifera"
/chromosome="4"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(2392..2631,3181..3288,3897..3998,
4105..4152,4240..4314,5081..5164))
/locus_tag="VITISV_028025"
/product="hypothetical protein"
/db_xref="GOA:A5B030"
/db_xref="InterPro:IPR036249"
/db_xref="UniProtKB/TrEMBL:A5B030"
/protein_id="CAN67353.1"
/translation="MDPDSVKTTLSNLAFGNVMAAAARDYQKEVLSQQKAQASSSINQ
EVDLDELMDDPELERLHADRIAALKKEAEKRQALKKQGHGEYREVTEADFLGEVTGSE
KINIVFLLIDLSRIMDKHLKSLAPRHMDTKFIKLDAEIWEEKMIXPPGHSRLYLXRKV
KPLSSLICXIYWVVLALNHYFTGIVSEKKKDEDDEDXGYPESRRNTVRSSVDPNSDSD
"
CDS 10288..10614
/locus_tag="VITISV_028026"
/product="hypothetical protein"
/note="GO:0004175 GO:0008233 GO:0004298 GO:0005839
GO:0043234 GO:0005829 GO:0006511"
/note="weakly similar to EMBL:AP008215"
/db_xref="GOA:A5B031"
/db_xref="UniProtKB/TrEMBL:A5B031"
/inference="similar to DNA sequence:EMBL:AP008215"
/protein_id="CAN67354.1"
/translation="MKAQASXAGKRVPTSLQTKXSSALISLAVSFHLTMTKQQANWSS
YNNNGGSCVAIAGADYCVITAEALGSPTCDLSASAKGLGLTRMSVMSFLVAMALAAAV
VQHRLL"
BASE COUNT 3671 a 1849 c 1794 g 3556 t
ORIGIN
1 cactgatcca tcattgtttc ttaagtgatg aggtcatacc tttagaaaaa atattctcaa
61 taaaaaaaag aatttgtcat ttgaacytta tttaactatt tttttgtctt gcattaaatg
121 atttgtatga cgatagtgca atgggcagta ctacatttgg gacttgaata ctttgtgcat
181 atcamatata ccttaaggtt cttttgtcct ttacttgttt ttaagaaaga catgttgtta
241 ttgttgtcat ttccattcaa tagccttgag tactcaattc gcaactcaat atgcctattg
301 cttgtcaaga tgtatatcaa cgaggtacat gtagatatca ttatcttcat caatgatttg
361 ccattgactt tctcacattg tgtcatacaa tttagctaaa attcatttat ttatgtattt
421 ttatttttta tttttctcct tttagatgat aaataccttt ttagggttka atgtgagttt
481 gcatgtgata aatgacactt caattagatg atgcctttac tttgaattgt tcggccacac
541 aaaaaaaaca ttttgtgctt tttcttttcc ctttcgatag gatacaatac ttttatagcg
601 agagattcat agtagcaaat gcccttgatt cgcgagaacc aattcgcagt ttcaactatt
661 tttattcttt attctttatt ctttcttttt tctttttaca gttaatcaaa ttgcacttga
721 ttgagccaat atcacaattt tgatacatct actaccacta tagtcgttgc cccctgcctc
781 ccttataaca tatgcctctt caagggatgg gaggtgacct ttgctacact tgccatttgg
841 caacctctgg ccggtattgg cttgttctat tctacatcac ttctactttc acttagacta
901 gtcattgctt ataaattgtg aatttacaat aatagatcgg agttttacat gcataagttg
961 caaatcacat acatttaaat taaattgaat taaattaaaa ttaaaagtaa catttaaata
1021 aaggaaatta aacaattata ttaaagtaaa caaattgtaa atttgaaaat gtaaataaca
1081 aaacatgttt aattaaattg gatattgaaa caatatttaa attaaggtat ttaaaaaatt
1141 aaatttaaag taaataaatt gtaaaattaa atgaatataa aactaaaatt taatttcaat
1201 taaattataa atgtataagt gtaaattaca attgatataa aattgtttta tattaaaata
1261 aactagtatt taaattatat atatatatat aaaatgaatg tatattgaaa taaatataaa
1321 attaatatca aaatttaaat gattaaagta tttaaattaa actacaatta ttagtaattt
1381 aataagatat tttgagcgat tgagatttga ttgaattaat tttgagcaag agtagttaga
1441 cattataaaa cttttctgac ccttggataa ggagcatgag tagttgcccg ttggtagcaa
1501 tccttttttg aaaaaataaa tcatttaaaa aatcatcaaa atattcacca taaattgttt
1561 gaaaatcagc tatacttcac cctccaccgg atcttttatc tggagcttga tcttgtccta
1621 ctcgagcttt gagtcaaaat acttagacta tgtttagttc caaaaatttg aggaaaaatg
1681 taaaggaaaa aaaatgcaaa aaataaaaaa tagaaagaaa gaaaaaataa agaaaaataa
1741 aaaataaatt aaaaatctca ttttatttat tttaactcat taatataaag attgaataat
1801 ttaaaaatac ataaattttt aattaatttt aattatattt gattttcttt tatatttttc
1861 atagaacaac caaacatgaa aaaataattt ttttttgtat tttttttctt tcctagtatt
1921 ttccgggaac caaatataac cttacagaaa cggataggtt ccaagtaaac tgacccaaac
1981 ggacccaatt ttctgctttt ctgatttcat tatatggcta acttgaaata tacccaattc
2041 cactgcctca aggcaaccaa aaatagtagt ttttctcata ttcaaatata cccaagctca
2101 atctctatct cgaattttct tcccgccctg taggtcaagc ctctacatcc atacataagt
2161 acaggaccat tccaaggctt taattaaaat gaaaccaaat aatctacaat gacctctggg
2221 atatcctaag gaggatcagg aacatactcg cacttcctct ctccccaaat accatcatta
2281 attcagctgt ttattggttc atgcctatgg ctatgaaacc gatatcacac tactaggcat
2341 tccaaaagca actcacaatc acaattgaac tcttcaatta ctttttccat ttcagtctga
2401 atcagagttt ggatccacag atgatctcac tgtgttgcgt ctactttcag gataaccccy
2461 gtcttcatca tcttcatctt ttttcttctc actaactata cctgtaaaat aatggtttag
2521 agccagcact acccagtaga tayagcaaat tagactggac aaaggtttya cctttctttr
2581 taagtagagc ctcgartgtc ctggtggcra aatcatcttt tcctcccata tcttgaaacc
2641 caatcaacct atctactgca atcccttttc tgaaagagat krtgccagtg yatattkcca
2701 agttatatrt ttaatccaaa aaagaamtwt agtctgatat ggcatgaaay wgtcaagcat
2761 atatgccagt gcactttggc atatctttca gattgatttt ctgcttgggt tttctttaag
2821 cagtctatac aagtgtgcat tattttgccc catttgcaac aagacaagaa actyyrgaat
2881 tttactactg gaggtagagg gtagtaatga gattccaatt tttctcttcg tgggaaccaa
2941 atgaagttct acatcactga catgcttctc acaaaattac aaagagcagc ataaaatata
3001 aaatggagca gtgaaaaagt actagagaga gcctgacctg aataagatga cacaaggcaa
3061 tgttttgact cctagtttgg tgacaaagaa tggtgcattc tgcatttcac ttttaacaat
3121 gagatcttat tttcctcagt ttcactgtgc acaagaacaa aagagttaat gaaaacagac
3181 ctctgcatcc agcttgataa acttggtgtc catatgcctt ggtgcaaggg atttcaaatg
3241 cttatccatt atcctagaaa gatcaatcaa taggaacaca atattaatct gcaaatacat
3301 gcatccatgt aaacagaggt tcaagagaac acctccaaca acagcttaca aatgcgagct
3361 cactgatgtg agagaggctt atacatcaat gtgaaagtgt caggaaaact gcttctaaac
3421 atgggcttat gaaggctcat gccaaaagat aatacgtcca tgtacgtgtc atttttcact
3481 ctaacctctc ctctactgat gtttgagata tatccatcat cgatagagag aaactaacgc
3541 tcctgtcaca taattttatc ttcttctact gaaatttacc caatcaaaat cttaactcat
3601 tgcaataaat ttaacctcac ctattgcaaa ctagatgaat tctggaaaaa gcataacaag
3661 atctggggca gtcatatcga acccctcaag acacttcctt ttagacatgt gcatataagt
3721 gtgtgtgtgt gagagagaga tagagtggaa aaagcacaat aagagctggg acatggtcat
3781 atccaacccc taaacaccct tcctttttga catgtgtgaa taaagagtgt gtgcaagtat
3841 gaagagaaac tttacttgca ccggtagaac tcctgatggt agaagtggca aattactttt
3901 tcactcccag tgacttcacc caagaagtct gcctcagtta cctccctgta ttctccatgc
3961 ccttgcttct ttaaagcctg tcgcttctca gcttctttct atcaaataaa tcatagggta
4021 aatacttcac cattctcaga aaagattacc acatatctca atatttaaag atataggttc
4081 atttcacaaa gatcgaattc tgaccttaag agctgcaatc ctatctgcat gcaatctttc
4141 cagctctgga tcctgatatc acccatgcaa gtaaattcat gtaaaaagaa ataagtgcat
4201 taaaaagaag acatgacata gatgcattat cccacttaca tccattaact catcaagatc
4261 aacctcctga ttgattgaac tggaagcttg tgccttctgc tgagatagca cttcctgcaa
4321 gaccagaata agatgttgtc gcattaattt tcatgaatta tgaggaaggt tttccaagct
4381 atcagacttg ccaccttcac cattattctg ttatatttat ggaaacctct gaaaacactc
4441 aatcatggag gaaaaaaagt tagtatcatt gttttaatcc tcttattatg gttgactagc
4501 ttatgcataa gaatgtcagg tcttcaggtt caccatagta ctcagttccc gtccctccag
4561 tgcaagaggt ttaaaatcaa aacattagtg gatagaaaat attgcattac ttatgagata
4621 tgatgttgaa aggtggttcc aacaggtaac acactccatt ctaagcccct cttagggaca
4681 atgttacacc tttcagtttc caggggaaaa aaaggcacat aacattcttt gagtttctta
4741 acaactgagg gaaagaagca ttcaagtcct gttcctaaag aaagagaaat tcttcctatc
4801 aaatccatga acataggcaa tgtaaatcat cctgtggaat aactattgtg cattgcctga
4861 gtatttttgg taacaaatag catggaatgc taaaatcaag ttttcatcat gctgtaccaa
4921 gcagcaagca gcaagcaata ttaagatcaa gtccacgtca tgcctttcaa tggatagtct
4981 catatcatgc ttctgaatgg tagatactgg ccagtagcaa actaagagcc agagaagaga
5041 ctgttcttaa atgaaagaaa gaagaaaatg aaagaggcac cttttgataa tctcgagcag
5101 ctgctgccat tacatttcca aatgctaaat tggacaaggt tgttttaact gaatcaggat
5161 ccattttctc tgtgaaaaat tatagcacaa taaagattag aaaatactct agtagagatg
5221 accttagttt aaaaaaacaa gaaagaaaat catatgcacc attcttggac taaattcaag
5281 gacagactag ttcgtgataa ggccacatag actcatagag tcatcttcta aaagctcata
5341 gttaatgaaa caacaatata ttttgtttag gaaaccaatt tcaaaacaac atgtattgct
5401 aataatttct tatgcaggag aaataatgat tttccatcag acactgaggc ttctacattc
5461 cccagaaaaa gggttaaaaa agaaacaacc aaagtgccga gaacaaatgt atgtgtgcca
5521 gtattagttt gcccaaacaa taaagcaaag gaaaaaactg gattggccaa gtacttacaa
5581 gtgttaatat ggaatggagt atttcttaat acccatccaa atcattatat gtgtatgtct
5641 ttttctgttt aaaccatacc ataagggctt ttcctgaatt gactgattac tcagttgaaa
5701 aaaaaaatcc aacatactta tggaaataca tattcgataa ggtaaattgt tctaagtaca
5761 gttatatcac tctaatgaaa accaagattt tccacttgaa actgtcaacg aacagaattg
5821 aatactcctc atcacttgca cacaggttac aattctgtaa attgttgata acttaaaaat
5881 gctttcgaat gtactgcaat gtgaaaaaag gcaacagatg taaagtgttt aaggaatgga
5941 aactaaggga ttttatattc acaacttact caaggcaaaa atgggcaatt gcagagatga
6001 attagtctct ctaagagtga ggagatgcaa aatgaacatt accactaagc actgacagaa
6061 gggttaaaat gcatttttgt gtggaagtga tactttctgg actctatatg gtagcaaact
6121 atggataaat ctcctacaat taatatgaac ctcaaatagt aaggaactaa aacgaggaaa
6181 taaacaagca atgggaaatt caattgaaaa ccccaccaga agaagagaaa tgtcatggac
6241 cttaatgttg actcatctaa tcaacaaaag ataactccac aacaggtcat aaaccaatgc
6301 ttaaggctct aaaacaaaaa attgaagaaa tacgagctta gtccaatgga tcagcatgat
6361 tccaccttct aaatatgggt catttccaga aaaaataaat gaataaataa actgtttttg
6421 aagccatagg gagggaagga tcctgctgcc ggagaggaag ctaggagagg aagctaggtc
6481 gccatcgact cctatccggg ttaccgcggc agggaaggat cctgctgctg aagagaggaa
6541 gcgtgacccc aacacacaac acaaacatac ccaatcttca aacaaagcaa aaatagacgg
6601 agtgacatag gaaaagagcg acatttattc acctataaca agactatcgg agagatcgcc
6661 gccggcgagc aagagtcgaa ttcagatcgc aaatgtagaa gaaaactctg aaaaaccttc
6721 caatcgcttg agatgcgatg aacacgaatg gagacacgaa gactaggtta gagtttagga
6781 agaaattggg aaaaataaga agaaagaaga gggaaatgtg aatagtgttg gtgttcaaat
6841 agaatttggg gaaactgaga agaaactgag gaaggtgaaa cgggaaacga cgtcagatcg
6901 cattttcaaa atcctgctcc gctttgaaat aaaaataact aaaatccatg tggcacgatt
6961 ttttaaaatt attattattt aaatattatt aaaaataata ttttaaaaat aagcataaaa
7021 acttatcact tttaaatact tattttattt ttacattaaa tttgcatctt gaaaaaataa
7081 attcattttt tttattaaaa aggcaaaaag aaaaaatgaa ttttaataaa atttaaaagt
7141 gttgtaattt taaaattatt ttttatcaca cggcttttta aaagaaatat ttttaaaaaa
7201 taatattact tgtgaaagtc aatgctaagc aactacaaat gaattttggt ccaaaattta
7261 ttttattttt ggtcaaaatg atccaaaatc ccaaataaag aaccctaagt gatcaaagtt
7321 agtatccaaa taatcttaat tatttttaaa gaaatacatt aaatttaagt ttgataaatt
7381 tgggttctta ttgatgttaa tgttggaata tgtgcccaca aacaaatgag atgttttttt
7441 attttgctga ttattaatat tttttaagga attatttcaa tattattgtt gcatgcatgt
7501 tttagatgct ttataaatat cgaaaaccct agattattta attgtaactt taaatattgt
7561 atataagtgt tatatacagg aggataatat ttaaagtaaa ataatctaat atgttcgtaa
7621 ttaaaaatta aagttgggat ctttaattta aaattattag cgcggttcat tacattctga
7681 atgaaatgat cttatccaga ttgttaataa tgagattatt ggaataaaat cgttttatat
7741 aatttgatta tataggactg gaacacgatt aattatgaat ctctgataaa ttccgttata
7801 atatagagca ttcaatatta atcaatgatg gtcatatatg tattgatctt aattctgaat
7861 aattaataga ctcctattta ttgtattgta tttttgacat accgggtaat gacacaaata
7921 catagtgtca aattcttggt gtattggaag tataataaaa taaatagtcg gaaatattaa
7981 tatacaagat gaaatccatt ctttcgttaa gaagtcagat ggacggttcc cataagtatt
8041 ggttcgggcc ttgaatgata agagcgctca atttatgatt agaccataaa tatattattc
8101 attagagaac caatggcact taaggagaaa gatataatta aagaggttaa cggaaaaacc
8161 tagctttaat tatgaaccgt ttatggagga ttgactcata tgtagtgact atatcaatgg
8221 gcaattcaaa tcctttgaat atatttaatt ttataatttt aagagtgcaa ttccaaattt
8281 ttagtggagt aattttggaa ttaataattt tgatttttta attaagttgt taattaattg
8341 tcaaaattat tggagcttaa aattataatg tccatagttc ctctcaacgg ctccattaaa
8401 aattatatga acattttttt ttatgttggg ttgattttat tagtttggaa ttttgaattc
8461 taaattaatt tcacacaatc ttgatttgat ttatttattt tataatttga ttatttaaaa
8521 tattttttga tacaatgtgg tgaagaccac acttacttgt attccctaag aaacactttt
8581 taagtgggga tcatgggkag agatattctc tccctggttt ttcaaaattc aaaatatgtc
8641 agttattttt tyttcgttgt attaaaaarw wtttttttcc ctcaattttt ttgatgggat
8701 gagaatacac gttttcaata tattaagttg tgtgataaaa acccaaaaaa ataaaaaacg
8761 cccactcgtt ttgagttcat cattayttgg agaacgttag agaaagattc atggtgcttt
8821 agaggatttg gaattctaag atctttttgg tggagttcaa atttatcagc ctaatcgcaa
8881 ggtacaattc taaattacct atatttgtta tttcattaaa ttaatacaag tattgatcat
8941 tgagaaaaaa aattttgaga aaaaaaattt tgagaaattt tttatggctt ccgtttttct
9001 tttaattatc tggtttcaaa accaacaatt ggtaaggtca gagcaggttg atactctgta
9061 tttaaattta atgaatgtgt agaccccctc aactggaggg gcaggttttt ttattttcat
9121 tgatttttct ttttttgcat gcttaaaaaa acttttctgc tttctttatc cacccgagga
9181 cggctggaag tgaaaggggg gagaaggcag agcttttggg cggcgagatg ggacagaagg
9241 cagagagtag gagagggctg tgaagaaaaa ggcgggaaaa gaaaaagaaa agaaaaagca
9301 ggaagctggg agtatcgcag agggagcttt tcttcaagcg ggacatccag agcagaaaca
9361 ggggagcaag ctgaagagaa tcggaagatc cgttcaacct gattctcttg gtacaggtat
9421 ggtttttagt ctgttttgct tcccctgttt ttgaactgtt cttctctgtt tttagtcact
9481 tgcggattcc tttgacattt ggagaccact tgtgcatttt gcttcccgtt ttggaatatt
9541 ctgagtgtgg actcgtcatt gcatttgatt tttgaggatc atgcccatgt ttttcttttg
9601 gttctaccat cggcatctgt ggaatggggc aagaaccaac agttctcttt tatgtatata
9661 agcatgctct gttttcttct catatttatt tgtcaagttc ttttggaaat gctgggggaa
9721 atctggtytg ggatgtttct gaggaggctc agcctcagag tctttgggag atatccgggc
9781 aaaggaaacg gatgggattg cttcgatagt ttaaattgat gaatttgttg aagctgcagt
9841 ttttgcctta tgtagatcca ttgtagcatt tgctgcctct gatccaatct gctcactaaa
9901 cctttctctc tctctctctc tctttctcac gtacccttct ttattccatc agatcaaaca
9961 tatgaatgta gcaattgttg atatatatat atttccgatt acctcaatct ctctttgatg
10021 aaagtcacaa gagcccatca acatctctca atctctcarg tccatgcatg aacccattga
10081 attgagtgtc tttgcctcta caaaaggaaa ctaagcaatc cgraaaaaca cccacaacta
10141 attctttact cacctctttc tttcccatct ctaccttttt tctttttttc tttttccttt
10201 ttctctttcg ggttttctct tcaagtccgt gcgtaaaatc tcttatgatg tcgccggata
10261 ttattccgat aaagccggcc agcaaagatg aaagcccagg cttcgrcagc tggaaaacgg
10321 gtgcccacaa gcctccagac caagycctcg agtgccttaa tctccctcgc tgtctctttt
10381 catctcacaa tgacgaagca gcaagctaat tggtcttctt acaacaacaa tggaggatct
10441 tgtgttgcaa ttgcaggtgc cgattactgc gtcatcacag cagaagcact tggcagcccg
10501 acatgtgatc tatcagcatc agcgaaaggg ttgggtctta ctcgaatgtc ggtgatgtcg
10561 ttcttggtgg cgatggcact ggcagcggcg gtggttcaac atcgccttct ataatgcaac
10621 gcatggcagc taagtggcga aagaagtcag acttgtcaat ggagttcgtt ttgcatggcc
10681 acccactaag cccatttcca aagcccactt actccttttg tttattcatc tccatgcatg
10741 cacacatcag aatgtattat ttatttatat atttatgtat tcatttatgc aaattcttca
10801 ttctcaataa caaggcttaa tccaccttty tttttttttt taactttyaa watcttcatt
10861 twcwwaattt aactttaacc ywaaacttta ctttattaac ttattaatta
//