LOCUS AM435877 1840 bp DNA linear PLN 05-FEB-2008 DEFINITION Vitis vinifera contig VV78X136773.1, whole genome shotgun sequence. ACCESSION AM435877 VERSION AM435877.2 DBLINK BioProject:PRJEA18357 KEYWORDS . SOURCE Vitis vinifera (wine grape) ORGANISM Vitis vinifera Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis. REFERENCE 1 AUTHORS Velasco R. JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and Molecular Biology, istituto agrario "San Michele all'Adige", Via Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY. REMARK revised by [3] REFERENCE 2 AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R. TITLE The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome JOURNAL PLoS One 2(12), e1326-e1326(2007). REFERENCE 3 (bases 1 to 1840) AUTHORS Velasco R. JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige (TN) - ITALY COMMENT NOTE: This is a 'working draft' sequence. The true order of the contigs and the gap size among them are not known. The actual genome coverage is 11X, 7X sequenced by Sanger method and 4X by pyrosequencing. Sequencing effort has been performed by IASMA, Myriad Genetics and 454 Life Science. The gene prediction has been performed by FGENESH program in collaboration with Softberry, while the identified genes has been annotated by similarity search and their function has been described using Gene Ontology terms (www.geneontology.org). FEATURES Location/Qualifiers source 1..1840 /organism="Vitis vinifera" /cultivar="Pinot Noir" /mol_type="genomic DNA" /clone="ENTAV 115" /db_xref="taxon:29760" CDS 1235..1555 /locus_tag="VITISV_020159" /product="hypothetical protein" /note="GO:0003723 GO:0003677 GO:0003964 GO:0003682 GO:0000785 GO:0005634 GO:0006278 GO:0015074" /note="partially similar to EMBL:AP008212" /db_xref="InterPro:IPR000477" /db_xref="UniProtKB/TrEMBL:A5AUA9" /inference="similar to DNA sequence:EMBL:AP008212" /protein_id="CAN62829.1" /translation="MCVDYRALNQITIKDKFPIPIIDELLDELFGTRYFSKLDLRSGY HQIRVHESDVHKTTFRTHEGHYEFLVMPFGLTNAPSTFQSLMDEIFKPFLRKXILDFF FMTS" BASE COUNT 624 a 312 c 397 g 492 t ORIGIN 1 ctagtgggtt atcagaggta gtttttttgt tcaatgtttc attagtggct tggaagaggc 61 aaataaaaaa tcaagtcacc atrctwctac cyaagcacac twtcctaagt crttrggtta 121 gccttgctac aagaagggac aatggaggca atcctcaaaa aagtcaaggg ctctaataga 181 aatgaaggaa ttacaaggaa cactatggga accagaatgg tcaattacct cccatcaaga 241 ggatctcaac tgtagaaatg caagagaaaa gagaaaaaaa aaaagacttt gttattattg 301 caatgagaag tatgagcctg acgataagtg taaaaggaag cagatttttt tgctagatgg 361 tgatgaaagt gaagaaaaag cgacatgtga agctgaaaac gatattaagg aggatgatct 421 agtggtgtca ctcaatgcta tatttggttc cacatctcac caaaccatga ggatccgtgg 481 caacataaaa aggaaagccc tcaccatayt aattgactcc ggaagcaccc ataatttcct 541 tgatcctata gtggccaaaa gaacaggatg cttaatacaa actaccaacc ccttgaaggt 601 agcagttrca gacggaacta aaatcaccag tgatgcaatt tgtaggcaat tgacttggaa 661 catgcaagag aaggaatttc aagcagattt aaggctcata cctttggtcg ggtgcaatat 721 ggtattggga attcaatggc tagttgaatt gggacccata ctatgggatt tcaagaattt 781 gagaatggaa tttatggtta agggaagaaa attmgkgttg aggggtgcaa ccacaagccc 841 tattaagtta gtttcaggaa aacagattca aaaggattta aggcaaatat cttatgcatc 901 tacaactcaa attttttcta tacaagtaga ggaggaaaaa atagtcaaag agcaaggaaa 961 agagcctgag ggattagctc aactattgca acaatacatg atggtatttt tagaacctca 1021 aggtctacca ccttgaagag cacacaacca taaaattcca ttggaactag gtatgtctct 1081 acccaatatt agacygtaca ggtaccccta tgtgtagaaa aacgagattg aaaaggtagt 1141 acatgaaatg cttgaagttg gtactatacg aagaagcgtg agcccttttc cttcgcctgt 1201 gcttttggtc aagaagaagg acaatacatg gagaatgtgt gtcgactata gggctcttaa 1261 ccaaattact attaaagata agttccctat ccctattatt gatgagttgt tggatgaatt 1321 gtttgggaca aggtattttt ccaagttgga tctcagatca ggatatcacc aaataagagt 1381 acatgagtcc gatgtccata aaacaacctt taggactcat gaaggtcact atgagttcct 1441 agttatgcct tttggcttaa ctaatgcccc atccacgttc caaagtctaa tggatgaaat 1501 attcaagcca tttttgagaa agttkattct ggattttttt tttatgacat cttaatctat 1561 agtggtgatk ggaaggaaca ctcgaggcat ttgcagttag tattggaagt gttgcaacaa 1621 aatcaactgt ttgtgaagaa racaaagtgt gtttttggwa aaaaacaaat cgagtactta 1681 gggcatatcg tttctgaagc aggagtagcc acagattcga ccaaaattca gagcatgtga 1741 cagtggcccc aacctaactc actcaaatcc ttgaggggat ttttgggact aacatggtac 1801 tatcgcagat tcatcaagga ttatggcaag gttagtcaac //