LOCUS       AM435877                1840 bp    DNA     linear   PLN 05-FEB-2008
DEFINITION  Vitis vinifera contig VV78X136773.1, whole genome shotgun sequence.
ACCESSION   AM435877
VERSION     AM435877.2
DBLINK      BioProject:PRJEA18357
KEYWORDS    .
SOURCE      Vitis vinifera (wine grape)
  ORGANISM  Vitis vinifera
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE   1
  AUTHORS   Velasco R.
  JOURNAL   Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
            Molecular Biology, istituto agrario "San Michele all'Adige", Via
            Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
  REMARK    revised by [3]
REFERENCE   2
  AUTHORS   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
            Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
            Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
            Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
            Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
            Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
            Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
            Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
            Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
            Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
            Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
            Viola R.
  TITLE     The first genome sequence of an elite grapevine cultivar (Pinot
            noir Vitis vinifera L.): coping with a highly heterozygous genome
  JOURNAL   PLoS One 2(12), e1326-e1326(2007).
REFERENCE   3  (bases 1 to 1840)
  AUTHORS   Velasco R.
  JOURNAL   Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
            Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
            (TN) - ITALY
COMMENT     NOTE: This is a 'working draft' sequence. The true order of the
            contigs
            and the gap size among them are not known. The actual genome
            coverage is
            11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
            Sequencing
            effort has been performed by IASMA, Myriad Genetics and 454 Life
            Science.
            The gene prediction has been performed by FGENESH program in
            collaboration
            with Softberry, while the identified genes has been annotated by
            similarity search and their function has been described using Gene
            Ontology terms (www.geneontology.org).
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Vitis vinifera"
                     /cultivar="Pinot Noir"
                     /mol_type="genomic DNA"
                     /clone="ENTAV 115"
                     /db_xref="taxon:29760"
     CDS             1235..1555
                     /locus_tag="VITISV_020159"
                     /product="hypothetical protein"
                     /note="GO:0003723 GO:0003677 GO:0003964 GO:0003682
                     GO:0000785 GO:0005634 GO:0006278 GO:0015074"
                     /note="partially similar to EMBL:AP008212"
                     /db_xref="InterPro:IPR000477"
                     /db_xref="UniProtKB/TrEMBL:A5AUA9"
                     /inference="similar to DNA sequence:EMBL:AP008212"
                     /protein_id="CAN62829.1"
                     /translation="MCVDYRALNQITIKDKFPIPIIDELLDELFGTRYFSKLDLRSGY
                     HQIRVHESDVHKTTFRTHEGHYEFLVMPFGLTNAPSTFQSLMDEIFKPFLRKXILDFF
                     FMTS"
BASE COUNT          624 a          312 c          397 g          492 t
ORIGIN      
        1 ctagtgggtt atcagaggta gtttttttgt tcaatgtttc attagtggct tggaagaggc
       61 aaataaaaaa tcaagtcacc atrctwctac cyaagcacac twtcctaagt crttrggtta
      121 gccttgctac aagaagggac aatggaggca atcctcaaaa aagtcaaggg ctctaataga
      181 aatgaaggaa ttacaaggaa cactatggga accagaatgg tcaattacct cccatcaaga
      241 ggatctcaac tgtagaaatg caagagaaaa gagaaaaaaa aaaagacttt gttattattg
      301 caatgagaag tatgagcctg acgataagtg taaaaggaag cagatttttt tgctagatgg
      361 tgatgaaagt gaagaaaaag cgacatgtga agctgaaaac gatattaagg aggatgatct
      421 agtggtgtca ctcaatgcta tatttggttc cacatctcac caaaccatga ggatccgtgg
      481 caacataaaa aggaaagccc tcaccatayt aattgactcc ggaagcaccc ataatttcct
      541 tgatcctata gtggccaaaa gaacaggatg cttaatacaa actaccaacc ccttgaaggt
      601 agcagttrca gacggaacta aaatcaccag tgatgcaatt tgtaggcaat tgacttggaa
      661 catgcaagag aaggaatttc aagcagattt aaggctcata cctttggtcg ggtgcaatat
      721 ggtattggga attcaatggc tagttgaatt gggacccata ctatgggatt tcaagaattt
      781 gagaatggaa tttatggtta agggaagaaa attmgkgttg aggggtgcaa ccacaagccc
      841 tattaagtta gtttcaggaa aacagattca aaaggattta aggcaaatat cttatgcatc
      901 tacaactcaa attttttcta tacaagtaga ggaggaaaaa atagtcaaag agcaaggaaa
      961 agagcctgag ggattagctc aactattgca acaatacatg atggtatttt tagaacctca
     1021 aggtctacca ccttgaagag cacacaacca taaaattcca ttggaactag gtatgtctct
     1081 acccaatatt agacygtaca ggtaccccta tgtgtagaaa aacgagattg aaaaggtagt
     1141 acatgaaatg cttgaagttg gtactatacg aagaagcgtg agcccttttc cttcgcctgt
     1201 gcttttggtc aagaagaagg acaatacatg gagaatgtgt gtcgactata gggctcttaa
     1261 ccaaattact attaaagata agttccctat ccctattatt gatgagttgt tggatgaatt
     1321 gtttgggaca aggtattttt ccaagttgga tctcagatca ggatatcacc aaataagagt
     1381 acatgagtcc gatgtccata aaacaacctt taggactcat gaaggtcact atgagttcct
     1441 agttatgcct tttggcttaa ctaatgcccc atccacgttc caaagtctaa tggatgaaat
     1501 attcaagcca tttttgagaa agttkattct ggattttttt tttatgacat cttaatctat
     1561 agtggtgatk ggaaggaaca ctcgaggcat ttgcagttag tattggaagt gttgcaacaa
     1621 aatcaactgt ttgtgaagaa racaaagtgt gtttttggwa aaaaacaaat cgagtactta
     1681 gggcatatcg tttctgaagc aggagtagcc acagattcga ccaaaattca gagcatgtga
     1741 cagtggcccc aacctaactc actcaaatcc ttgaggggat ttttgggact aacatggtac
     1801 tatcgcagat tcatcaagga ttatggcaag gttagtcaac
//