LOCUS       AM434940                8084 bp    DNA     linear   PLN 05-FEB-2008
DEFINITION  Vitis vinifera contig VV78X047089.7, whole genome shotgun sequence.
ACCESSION   AM434940
VERSION     AM434940.2
DBLINK      BioProject:PRJEA18357
KEYWORDS    .
SOURCE      Vitis vinifera (wine grape)
  ORGANISM  Vitis vinifera
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE   1
  AUTHORS   Velasco R.
  JOURNAL   Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
            Molecular Biology, istituto agrario "San Michele all'Adige", Via
            Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
  REMARK    revised by [3]
REFERENCE   2
  AUTHORS   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
            Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
            Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
            Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
            Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
            Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
            Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
            Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
            Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
            Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
            Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
            Viola R.
  TITLE     The first genome sequence of an elite grapevine cultivar (Pinot
            noir Vitis vinifera L.): coping with a highly heterozygous genome
  JOURNAL   PLoS One 2(12), e1326-e1326(2007).
REFERENCE   3  (bases 1 to 8084)
  AUTHORS   Velasco R.
  JOURNAL   Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
            Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
            (TN) - ITALY
COMMENT     NOTE: This is a 'working draft' sequence. The true order of the
            contigs
            and the gap size among them are not known. The actual genome
            coverage is
            11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
            Sequencing
            effort has been performed by IASMA, Myriad Genetics and 454 Life
            Science.
            The gene prediction has been performed by FGENESH program in
            collaboration
            with Softberry, while the identified genes has been annotated by
            similarity search and their function has been described using Gene
            Ontology terms (www.geneontology.org).
FEATURES             Location/Qualifiers
     source          1..8084
                     /organism="Vitis vinifera"
                     /chromosome="8"
                     /cultivar="Pinot Noir"
                     /mol_type="genomic DNA"
                     /clone="ENTAV 115"
                     /db_xref="taxon:29760"
     CDS             complement(join(2553..3232,4498..4767,5268..5661))
                     /locus_tag="VITISV_029111"
                     /product="hypothetical protein"
                     /note="GO:0000166 GO:0003924 GO:0005525 GO:0005198
                     GO:0005874 GO:0043234 GO:0051258 GO:0007018"
                     /note="highly similar to EMBL:AP008211"
                     /db_xref="GOA:A5ATG8"
                     /db_xref="InterPro:IPR000217"
                     /db_xref="InterPro:IPR002453"
                     /db_xref="InterPro:IPR003008"
                     /db_xref="InterPro:IPR008280"
                     /db_xref="InterPro:IPR013838"
                     /db_xref="InterPro:IPR017975"
                     /db_xref="InterPro:IPR018316"
                     /db_xref="InterPro:IPR023123"
                     /db_xref="InterPro:IPR036525"
                     /db_xref="InterPro:IPR037103"
                     /db_xref="UniProtKB/TrEMBL:A5ATG8"
                     /inference="similar to DNA sequence:EMBL:AP008211"
                     /experiment="confirmed by EST"
                     /protein_id="CAN64894.1"
                     /translation="MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL
                     ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWA
                     KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
                     DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT
                     TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR
                     GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQ
                     NKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRK
                     AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEVDYEDEEEEGLEPM"
BASE COUNT         2933 a         1468 c         1261 g         2358 t
ORIGIN      
        1 tatgtaagag gtttgccgtc ggcctgacct cattgtaatt gtattgggct aagactggcc
       61 cagcccagtt tttgtggcac agcattttga tggtccaaaa gcctaggacc tgtttggaaa
      121 tatttcaaaa aataattttt caacagtttt taaaaataaa attttgttta agaattcaaa
      181 tatgaaaaat agtttttttt ttactccatg aaaatactac tcacttatgt acaatacaaa
      241 aagttttaaa gcatttttca tattcttgct ctaaagaata gaaaactatt ttcaataacg
      301 gtttctaacg gagtctagat ttttatagta tgcaagttga caattcaaag gaattaaatg
      361 aattaaacaa aaaattggga cattcatagc atgagtaggc cgatgatcgg atgaattgga
      421 ccagctgcct tgtctaaaca actaggcatc atttttttga ctttttactg aaaacaattt
      481 gtttttaaaa tttaagttgt ttgttttttt acttttcatg acttattata aattttttat
      541 taaatagaaa aaaccaaaat atgtaacttt ttttaaatag aaaaaataac atattggttt
      601 ttatttactt tttaatactt aataaaaata aaatactacc aaaacaaaca acataacatt
      661 taacactatt aagtattaag attctattta gaattaaata aaaaaacaaa caccataact
      721 ttttttaaat agaaaaaata acatattggt ttttttactt tttaatactt aatagaaata
      781 aaatactata aaaacaaaca acataatatt taacattatt aagcattgag gttctattta
      841 gaattaagta aaaaaacaaa caccacctat gtttaacaag aaaatatttg atttacattt
      901 atttattgga aaataagaaa ataaatatat atgcataatt cgatccactt ataattagaa
      961 aaatgtctta tcaaatttta ttttattttt atcaaacatt aaaattaatg ttttcaaaat
     1021 caaaccggtc attaaatcga aaaaattacc aattcacttg tagaatcgac gatcagtgac
     1081 ataacaaata tataatttat atattattaa aattaaaatt aattataaaa ataaaattaa
     1141 tataatttat atattatttg aaaattaaaw ttttatttga aaattagaaa actagtttca
     1201 aattagaaat tttaaaattt atttttaaat caaaaactaa ttttaaaatt tatttttaaa
     1261 tcaaaaacta attttaaaat aataaaaatt atttaaaatt atatttaaat taaaatcaca
     1321 agttttaaaa atcataaaat taacaaataa caaatataaa ataaaacaaa taataatggg
     1381 gatgaataaa gtaaataaaa acaaaaataa aaatatggaa aggaagggga agaggaatca
     1441 ctggaaaaag aaatgggagg gggtcggggg tggtggtgca gccgctccag gccgatgggg
     1501 gcttttttaa accgtttggt tcacctgaaa cgagccagcg gcgggaaggt ggcaaacagt
     1561 gggggactgg tgctggagca ggcacgggtt tgctagtagt cagcaaaacg gcatcgtttt
     1621 gatgcaataa ataaaaaaaa attaaaatgt ttgaaccaat ccgattcgaa gggtaccgac
     1681 cgtccagttt gaagggaaca ggtcggtttg ttggatttgc ctcgtctgat tccgattcaa
     1741 ataccaccag tccaatgcac cgatcggatc agaaccgtat ggtcaagtcc gatccagttt
     1801 ttaaatccat gattaaaata gagatatcat atcagggtct aaccaagagc agcccgacct
     1861 caaacttgga caatacagtc tgaacccaat caagaagggc ccaagacatc taatgtaagc
     1921 aaaacagtca agcctgctag ccccatggtg tttaaatgtt ccaaaccaag ctcaagcgtc
     1981 aagaaccaag gcatgggccc catggccttc caagcagcag ggtcaatacg tcgtctttag
     2041 gaaattgctg acagtggata gtgtcgtaat tcaggatata ccttctattc cattaggact
     2101 aaccattcct tttacctaac atgcccatcc tcaataaggt gctggcgagt cttacacaaa
     2161 gcaagcttcc aattcgcctc tcatcagtta tggattgcat tcagccaaat ttcggcaaaa
     2221 cttacccaac acagcaatag aagagtttgg ggtgaaaaac aaatgagcag agatcattta
     2281 ctaagtaaaa traacaagaa aaacaaattt gaaattcaaa ccgataaggt gacacatcta
     2341 gatcccaaga ttcccaacta ctygayyttc cctcccacct ccccatcata ttttctggca
     2401 ctattacaac tggaagaaag aaaaataagc catttttcac tctcccaata ccaaagaaat
     2461 aaaattttca atcccatata gtaaatataa taatgcatca ttatcatagt aaaggaagag
     2521 gggcataggc atatctagta ttttcatctc ctttacatcg gctccaggcc ttcctcttcc
     2581 tcatcctcat aatcaacttc ctcatcagca gtagcatcct gatactgctg gtactctgac
     2641 acaagatcat tcatattgct ctcagcttca gtgaactcca tctcatccat tccttcccca
     2701 gtataccaat gcaagaaagc cttcctcctg aacatggcag tgaactgctc actcactctc
     2761 ctgaacattt cctggatgga tgttgaattc ccaatgaagg tggatgccat ggacagaccc
     2821 ctgggtgcga tgtcacaaac acttgatttc acattgtttg gaatccactc cacaaagtag
     2881 gaagagttct tgttttggac attaatcatt tgctcatcca cttccttggt gctcatcttg
     2941 ccacggaaca tcgctgaggc tgtcaggtag cggccatgtc gtggatcagc agcacacatc
     3001 atgttcttgg catcccacat ttgttgggtc agttctggaa ccgtcaatgc acggtattgc
     3061 tgggatccac gtgatgtcag aggagcaaac ccaaccataa agaaatggag tcgaggaaag
     3121 gggatcaggt tcacagcaag ctttcggagg tcagagttca gttgaccagg gaaccggagg
     3181 cagcaagtra caccactcat agtcgcagag atcaratggt tcagatcacc aactgcaaca
     3241 aagatttaca aataactgat aatcaataaa agttcaaaga taaattaaaa tgataaacag
     3301 tatcacaaaa tactcttttt tagctcataa accttaatga ctgtatggac taaaaagcka
     3361 tcagtcaaaa ttggctgtcc tggtgctcaa caaagacrca ccattcaaak gatttcatct
     3421 tartgtaatc acatagttag gagcaatttc cagcattact aaacataatg accaagagga
     3481 caagtgtatc agtagcagca ataagcttaa ttctaacatc actggcaaca ttcatgaaca
     3541 tggcagttag caastattag ttcytttagk ttccacacga aaggaaaaaa ggcagcaaca
     3601 atatctcaaa aaaagccgta gtggatgtca gtttcattat caaaacagga catgtaaaaa
     3661 ggtaaatgat tgcagacaat gtggttccca catccaacag cgccatgtgg gggtgacaat
     3721 gcaaaagctc agtcacaaat taagacatac atcacagaga tacaaaagat ataatctata
     3781 gaagtgaagg acacaggaga acaattacta aaatacttct gcccacttca ctcccacatg
     3841 acaacaaaca ttaggkgyca cataatattg gacractaat catgtagcat ctgtatttaa
     3901 gaagtatcac tggggccata gaatttcact ttrgacctat ctatcagtag aacaataatt
     3961 gacaccaata aaattaatca tatcagtaat gaatccacac ttccaaaaca aaggcctctt
     4021 tgcattcaaa ttgagaaaaa taaacaaatg aatgaacaaa cagcctagca atagatcatc
     4081 cagaatatta tcacaaccca aagaaaacac agagtcagga aggagcttma ttggaaaaga
     4141 catccacmga aaatsgagtg ttcaatccra ttctctagtg cataattggc aatctcagct
     4201 ccccaaaaat atctattctt ttaactcatg ccgagcatgg catacttagc agatcaatca
     4261 acaagtggca tccaaattcc aaatcatgga cataaatttg tttggaatta ctattgcaag
     4321 rtattttcag gggtctacta cccttaagaa aggaactttc tcatatataa taagcaagag
     4381 aagcattrca acaaaacaaa gcaaattgta taaatttcct ctcacataat cacatatcaa
     4441 cygcatacac aaaaatttag gcaacctatc aaaaagagat cttgttgtgg tacttacagc
     4501 taggagtggt cagtttaaga gttctgaaac atatatcata taaagcctca ttatcaagca
     4561 ccatgcactc atctgcattc tcaacaagct gatgaacaga aagtgtggca ttgtatggct
     4621 craccaccgt atcagagacc tttggtgagg ggaacacaga gaacgtgagc atcattctat
     4681 cagggtattc ctccctgatt tttgagatwa gcaaggtgcc catcccagaa cctgtacctc
     4741 caccaagtga gtggcaaact tggaaaccta cacaaagaaa atgacacatt ataagccata
     4801 ggccaataca ttaaaaaygc ccaacaaaga gaagytatgt tcaatttgta atagattgaa
     4861 tagcaaaacc atcaatttat cagatgtcct ccaaaattag aatgtgaaac ctctcatatt
     4921 agtggctcaa gtccttaaaa tcactaagag aaccaacctt cctgatgctt taatgtaagg
     4981 gtcggataaa taccagaatg gatcataact tgataactgc caagcattgt ctggttagca
     5041 ttttaaacta tttacctagg ttttaaaagg atttcaaaat taaaaatcta aatttcaaaa
     5101 gctttatgct tgaaatttat ctctcaaagg tgagaaaagt tgaaaccaaa atccggagca
     5161 acaatgcctg tattgtcact attaatacaa aaccaacaaa agacaagtac tgtgacttca
     5221 gagttaaaga caaaacaaaa attaacatta aattatatgt gttatacctt ggagacagtc
     5281 acagttctct gcttccttcc tcacaacatc gagaactgaa tcaatgagct ctgcaccctc
     5341 agtgtaatga ccctttgccc aattatttcc agcaccggat tgtccaaaaa caaagttgtc
     5401 aggacggaag atctggccat aaggaccagt gcgaacactg tccatagtgc caggttccag
     5461 atccatgaga acagcacgcg gaacaaatct cccacaagaa gcctcattgt agtagacatt
     5521 tactcgctcc aattgcagat cagaggtccc aacataccgt ccagttggat caatgccgtg
     5581 ctcatcacaa acaacttccc agaacttgga tccgatctgg tttccacatt gtccaccttg
     5641 aacatgaagg atttccctca ttttccctga aattaatagt tcagttaatt taacaacatt
     5701 ttactacaga aaaaccagtc aaaaataaaa atgcaacgga gaaattaaat taaacaagaa
     5761 atcctaagat cttgaaaaat aatcaataga acagactggg ttccataaat ttcctgaaca
     5821 ggaattgtac attgtttttg ccgtttggta atcaattctt aacagaactt ramattatat
     5881 tcatgagatc taactctgtc tgatccacac racaaatatt tcatcgtgat agaatgtgag
     5941 ttttcaaaga gatgttattc acagaaaatg rccagaawct tccactgaaa aacaagattt
     6001 gacgttttta caaaatgaga taaaaaaaat ttccttttcc acttccaatt wctaaaaaaa
     6061 ttcattgaaa gytaacggaa aacaatagct ttccccaaaa atcaaatcag aaaatccatg
     6121 caatgtgaag cgaayagata caaaaakaca aaatcactta tgaacgcatg wtttcattar
     6181 gccatagaat cagaaaaaag aaatcatatg aaaaacaaac aaaatcttga acatattgaa
     6241 acarataaac aagaaattca ctgaaagtaa aaattayaya tatagcaata ttttccawcg
     6301 tagattcaca cacaatgcca caragaattt gagaatcttc aacagatcta ccaatgccgg
     6361 ataaatattc actcacctag tkaaagacga agaaaattga aggtcgacct gagagagaga
     6421 sagagggaga gagagcaaat gcgttcgaga tgagccctag tycctagaaa cgtctatata
     6481 tgcgactgaa ggttgggcgt ggggatcgga cggaccgggy tgtttccctc cttttatctt
     6541 ccacaccgtt ggatgccgtt ggatgttgaa gacrgacggt gcagatgctc tttactgttg
     6601 tactaaaacg aagatttgat tttcaaaaac aattcagatg cagtgacwaa ttcgcccttt
     6661 ctcgaaatga ctggactgcc ctttgaccag agcgtcaaaa aatccaatcc ttaccttcag
     6721 gaaatcgcgg ccagattctt ccccatatac gacaaggctt aatyttcatc caaaaaaaaa
     6781 aamaaaagca yacatacyat gggaaattca aatttcyggg ttttcatttt catttttatt
     6841 aggggtaaaa tggtacttaa acttaatmcg aaaattaaaa actaaaatca aatgaaaacc
     6901 tagatttttt ttcccaaatt gaaaattgaa ttgggcccct tattaagtgg catgagagaa
     6961 tcatggcgca tttgstaagt gacttcaacy actatatctg ttgttgggtt agcttcatgc
     7021 atcacgtcaa gaaagtaaaa tgtcccatta atcaatttgc tttaatygaa tttaagggct
     7081 ttttggacac gtatgaggtt tggtgaccca acatttaccc atcagaaatt ataaaatgtg
     7141 tgaaaaatgt ttaaattata gagcactcca aaaagtgggc ccactcatga cttgatcggg
     7201 aggtcggccc tttccaccat cttaaaaggt agctacctaa ttattttttt cctctttttt
     7261 tttttttttt ttaccaataa catttaatgt tatttgtack ataattataa actttctttt
     7321 gcatcaacta ttttataatt attttatttc acccccatcc ttttcatcta cattattctc
     7381 atggaaatat atgactatat aaatgagtat tttatacatt atattataat ataacatatg
     7441 ataatatgag catttggctt atcattggtt ggaaaaaaat ctctccctcc tattgaggtt
     7501 tgtcatttaa agtaatggga taattacaat aaagtgtagg caagtgttat aattgcttta
     7561 aaaatatata tattgcataa ttgctctcag gtccataaaa gtatttggat aaaaacataa
     7621 tttatcgttc acatattttt atttatatgt ttttttatcc ttgtaattgt ttctaatatc
     7681 aaaccattat aaatattatt ttcatatgta taaaatgtta aatataactt ttttacttac
     7741 attttcacca cacacaaaac acttatatca aatatacaaa atatttgtat tagatataca
     7801 agatttatgc aaatctatcg gttatacatc tatttatgta tttttttatt attttatttg
     7861 ttttttcata tcgttrgaar cgcratttaa atacatgtat aaacgtcaaa tatactaata
     7921 tatattcaca tatataccaa aaaacttatt ctaagggtat aaagtatttg aactagttat
     7981 acaatgcatg tgcaagtatg tttattgtca atatatttac gggttttatg gatatcaaat
     8041 aaaaaaaaat gtaagtatgt atatgtcttg tacatttaat atgc
//