LOCUS AM434940 8084 bp DNA linear PLN 05-FEB-2008 DEFINITION Vitis vinifera contig VV78X047089.7, whole genome shotgun sequence. ACCESSION AM434940 VERSION AM434940.2 DBLINK BioProject:PRJEA18357 KEYWORDS . SOURCE Vitis vinifera (wine grape) ORGANISM Vitis vinifera Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis. REFERENCE 1 AUTHORS Velasco R. JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and Molecular Biology, istituto agrario "San Michele all'Adige", Via Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY. REMARK revised by [3] REFERENCE 2 AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R. TITLE The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome JOURNAL PLoS One 2(12), e1326-e1326(2007). REFERENCE 3 (bases 1 to 8084) AUTHORS Velasco R. JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige (TN) - ITALY COMMENT NOTE: This is a 'working draft' sequence. The true order of the contigs and the gap size among them are not known. The actual genome coverage is 11X, 7X sequenced by Sanger method and 4X by pyrosequencing. Sequencing effort has been performed by IASMA, Myriad Genetics and 454 Life Science. The gene prediction has been performed by FGENESH program in collaboration with Softberry, while the identified genes has been annotated by similarity search and their function has been described using Gene Ontology terms (www.geneontology.org). FEATURES Location/Qualifiers source 1..8084 /organism="Vitis vinifera" /chromosome="8" /cultivar="Pinot Noir" /mol_type="genomic DNA" /clone="ENTAV 115" /db_xref="taxon:29760" CDS complement(join(2553..3232,4498..4767,5268..5661)) /locus_tag="VITISV_029111" /product="hypothetical protein" /note="GO:0000166 GO:0003924 GO:0005525 GO:0005198 GO:0005874 GO:0043234 GO:0051258 GO:0007018" /note="highly similar to EMBL:AP008211" /db_xref="GOA:A5ATG8" /db_xref="InterPro:IPR000217" /db_xref="InterPro:IPR002453" /db_xref="InterPro:IPR003008" /db_xref="InterPro:IPR008280" /db_xref="InterPro:IPR013838" /db_xref="InterPro:IPR017975" /db_xref="InterPro:IPR018316" /db_xref="InterPro:IPR023123" /db_xref="InterPro:IPR036525" /db_xref="InterPro:IPR037103" /db_xref="UniProtKB/TrEMBL:A5ATG8" /inference="similar to DNA sequence:EMBL:AP008211" /experiment="confirmed by EST" /protein_id="CAN64894.1" /translation="MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWA KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQ NKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRK AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEVDYEDEEEEGLEPM" BASE COUNT 2933 a 1468 c 1261 g 2358 t ORIGIN 1 tatgtaagag gtttgccgtc ggcctgacct cattgtaatt gtattgggct aagactggcc 61 cagcccagtt tttgtggcac agcattttga tggtccaaaa gcctaggacc tgtttggaaa 121 tatttcaaaa aataattttt caacagtttt taaaaataaa attttgttta agaattcaaa 181 tatgaaaaat agtttttttt ttactccatg aaaatactac tcacttatgt acaatacaaa 241 aagttttaaa gcatttttca tattcttgct ctaaagaata gaaaactatt ttcaataacg 301 gtttctaacg gagtctagat ttttatagta tgcaagttga caattcaaag gaattaaatg 361 aattaaacaa aaaattggga cattcatagc atgagtaggc cgatgatcgg atgaattgga 421 ccagctgcct tgtctaaaca actaggcatc atttttttga ctttttactg aaaacaattt 481 gtttttaaaa tttaagttgt ttgttttttt acttttcatg acttattata aattttttat 541 taaatagaaa aaaccaaaat atgtaacttt ttttaaatag aaaaaataac atattggttt 601 ttatttactt tttaatactt aataaaaata aaatactacc aaaacaaaca acataacatt 661 taacactatt aagtattaag attctattta gaattaaata aaaaaacaaa caccataact 721 ttttttaaat agaaaaaata acatattggt ttttttactt tttaatactt aatagaaata 781 aaatactata aaaacaaaca acataatatt taacattatt aagcattgag gttctattta 841 gaattaagta aaaaaacaaa caccacctat gtttaacaag aaaatatttg atttacattt 901 atttattgga aaataagaaa ataaatatat atgcataatt cgatccactt ataattagaa 961 aaatgtctta tcaaatttta ttttattttt atcaaacatt aaaattaatg ttttcaaaat 1021 caaaccggtc attaaatcga aaaaattacc aattcacttg tagaatcgac gatcagtgac 1081 ataacaaata tataatttat atattattaa aattaaaatt aattataaaa ataaaattaa 1141 tataatttat atattatttg aaaattaaaw ttttatttga aaattagaaa actagtttca 1201 aattagaaat tttaaaattt atttttaaat caaaaactaa ttttaaaatt tatttttaaa 1261 tcaaaaacta attttaaaat aataaaaatt atttaaaatt atatttaaat taaaatcaca 1321 agttttaaaa atcataaaat taacaaataa caaatataaa ataaaacaaa taataatggg 1381 gatgaataaa gtaaataaaa acaaaaataa aaatatggaa aggaagggga agaggaatca 1441 ctggaaaaag aaatgggagg gggtcggggg tggtggtgca gccgctccag gccgatgggg 1501 gcttttttaa accgtttggt tcacctgaaa cgagccagcg gcgggaaggt ggcaaacagt 1561 gggggactgg tgctggagca ggcacgggtt tgctagtagt cagcaaaacg gcatcgtttt 1621 gatgcaataa ataaaaaaaa attaaaatgt ttgaaccaat ccgattcgaa gggtaccgac 1681 cgtccagttt gaagggaaca ggtcggtttg ttggatttgc ctcgtctgat tccgattcaa 1741 ataccaccag tccaatgcac cgatcggatc agaaccgtat ggtcaagtcc gatccagttt 1801 ttaaatccat gattaaaata gagatatcat atcagggtct aaccaagagc agcccgacct 1861 caaacttgga caatacagtc tgaacccaat caagaagggc ccaagacatc taatgtaagc 1921 aaaacagtca agcctgctag ccccatggtg tttaaatgtt ccaaaccaag ctcaagcgtc 1981 aagaaccaag gcatgggccc catggccttc caagcagcag ggtcaatacg tcgtctttag 2041 gaaattgctg acagtggata gtgtcgtaat tcaggatata ccttctattc cattaggact 2101 aaccattcct tttacctaac atgcccatcc tcaataaggt gctggcgagt cttacacaaa 2161 gcaagcttcc aattcgcctc tcatcagtta tggattgcat tcagccaaat ttcggcaaaa 2221 cttacccaac acagcaatag aagagtttgg ggtgaaaaac aaatgagcag agatcattta 2281 ctaagtaaaa traacaagaa aaacaaattt gaaattcaaa ccgataaggt gacacatcta 2341 gatcccaaga ttcccaacta ctygayyttc cctcccacct ccccatcata ttttctggca 2401 ctattacaac tggaagaaag aaaaataagc catttttcac tctcccaata ccaaagaaat 2461 aaaattttca atcccatata gtaaatataa taatgcatca ttatcatagt aaaggaagag 2521 gggcataggc atatctagta ttttcatctc ctttacatcg gctccaggcc ttcctcttcc 2581 tcatcctcat aatcaacttc ctcatcagca gtagcatcct gatactgctg gtactctgac 2641 acaagatcat tcatattgct ctcagcttca gtgaactcca tctcatccat tccttcccca 2701 gtataccaat gcaagaaagc cttcctcctg aacatggcag tgaactgctc actcactctc 2761 ctgaacattt cctggatgga tgttgaattc ccaatgaagg tggatgccat ggacagaccc 2821 ctgggtgcga tgtcacaaac acttgatttc acattgtttg gaatccactc cacaaagtag 2881 gaagagttct tgttttggac attaatcatt tgctcatcca cttccttggt gctcatcttg 2941 ccacggaaca tcgctgaggc tgtcaggtag cggccatgtc gtggatcagc agcacacatc 3001 atgttcttgg catcccacat ttgttgggtc agttctggaa ccgtcaatgc acggtattgc 3061 tgggatccac gtgatgtcag aggagcaaac ccaaccataa agaaatggag tcgaggaaag 3121 gggatcaggt tcacagcaag ctttcggagg tcagagttca gttgaccagg gaaccggagg 3181 cagcaagtra caccactcat agtcgcagag atcaratggt tcagatcacc aactgcaaca 3241 aagatttaca aataactgat aatcaataaa agttcaaaga taaattaaaa tgataaacag 3301 tatcacaaaa tactcttttt tagctcataa accttaatga ctgtatggac taaaaagcka 3361 tcagtcaaaa ttggctgtcc tggtgctcaa caaagacrca ccattcaaak gatttcatct 3421 tartgtaatc acatagttag gagcaatttc cagcattact aaacataatg accaagagga 3481 caagtgtatc agtagcagca ataagcttaa ttctaacatc actggcaaca ttcatgaaca 3541 tggcagttag caastattag ttcytttagk ttccacacga aaggaaaaaa ggcagcaaca 3601 atatctcaaa aaaagccgta gtggatgtca gtttcattat caaaacagga catgtaaaaa 3661 ggtaaatgat tgcagacaat gtggttccca catccaacag cgccatgtgg gggtgacaat 3721 gcaaaagctc agtcacaaat taagacatac atcacagaga tacaaaagat ataatctata 3781 gaagtgaagg acacaggaga acaattacta aaatacttct gcccacttca ctcccacatg 3841 acaacaaaca ttaggkgyca cataatattg gacractaat catgtagcat ctgtatttaa 3901 gaagtatcac tggggccata gaatttcact ttrgacctat ctatcagtag aacaataatt 3961 gacaccaata aaattaatca tatcagtaat gaatccacac ttccaaaaca aaggcctctt 4021 tgcattcaaa ttgagaaaaa taaacaaatg aatgaacaaa cagcctagca atagatcatc 4081 cagaatatta tcacaaccca aagaaaacac agagtcagga aggagcttma ttggaaaaga 4141 catccacmga aaatsgagtg ttcaatccra ttctctagtg cataattggc aatctcagct 4201 ccccaaaaat atctattctt ttaactcatg ccgagcatgg catacttagc agatcaatca 4261 acaagtggca tccaaattcc aaatcatgga cataaatttg tttggaatta ctattgcaag 4321 rtattttcag gggtctacta cccttaagaa aggaactttc tcatatataa taagcaagag 4381 aagcattrca acaaaacaaa gcaaattgta taaatttcct ctcacataat cacatatcaa 4441 cygcatacac aaaaatttag gcaacctatc aaaaagagat cttgttgtgg tacttacagc 4501 taggagtggt cagtttaaga gttctgaaac atatatcata taaagcctca ttatcaagca 4561 ccatgcactc atctgcattc tcaacaagct gatgaacaga aagtgtggca ttgtatggct 4621 craccaccgt atcagagacc tttggtgagg ggaacacaga gaacgtgagc atcattctat 4681 cagggtattc ctccctgatt tttgagatwa gcaaggtgcc catcccagaa cctgtacctc 4741 caccaagtga gtggcaaact tggaaaccta cacaaagaaa atgacacatt ataagccata 4801 ggccaataca ttaaaaaygc ccaacaaaga gaagytatgt tcaatttgta atagattgaa 4861 tagcaaaacc atcaatttat cagatgtcct ccaaaattag aatgtgaaac ctctcatatt 4921 agtggctcaa gtccttaaaa tcactaagag aaccaacctt cctgatgctt taatgtaagg 4981 gtcggataaa taccagaatg gatcataact tgataactgc caagcattgt ctggttagca 5041 ttttaaacta tttacctagg ttttaaaagg atttcaaaat taaaaatcta aatttcaaaa 5101 gctttatgct tgaaatttat ctctcaaagg tgagaaaagt tgaaaccaaa atccggagca 5161 acaatgcctg tattgtcact attaatacaa aaccaacaaa agacaagtac tgtgacttca 5221 gagttaaaga caaaacaaaa attaacatta aattatatgt gttatacctt ggagacagtc 5281 acagttctct gcttccttcc tcacaacatc gagaactgaa tcaatgagct ctgcaccctc 5341 agtgtaatga ccctttgccc aattatttcc agcaccggat tgtccaaaaa caaagttgtc 5401 aggacggaag atctggccat aaggaccagt gcgaacactg tccatagtgc caggttccag 5461 atccatgaga acagcacgcg gaacaaatct cccacaagaa gcctcattgt agtagacatt 5521 tactcgctcc aattgcagat cagaggtccc aacataccgt ccagttggat caatgccgtg 5581 ctcatcacaa acaacttccc agaacttgga tccgatctgg tttccacatt gtccaccttg 5641 aacatgaagg atttccctca ttttccctga aattaatagt tcagttaatt taacaacatt 5701 ttactacaga aaaaccagtc aaaaataaaa atgcaacgga gaaattaaat taaacaagaa 5761 atcctaagat cttgaaaaat aatcaataga acagactggg ttccataaat ttcctgaaca 5821 ggaattgtac attgtttttg ccgtttggta atcaattctt aacagaactt ramattatat 5881 tcatgagatc taactctgtc tgatccacac racaaatatt tcatcgtgat agaatgtgag 5941 ttttcaaaga gatgttattc acagaaaatg rccagaawct tccactgaaa aacaagattt 6001 gacgttttta caaaatgaga taaaaaaaat ttccttttcc acttccaatt wctaaaaaaa 6061 ttcattgaaa gytaacggaa aacaatagct ttccccaaaa atcaaatcag aaaatccatg 6121 caatgtgaag cgaayagata caaaaakaca aaatcactta tgaacgcatg wtttcattar 6181 gccatagaat cagaaaaaag aaatcatatg aaaaacaaac aaaatcttga acatattgaa 6241 acarataaac aagaaattca ctgaaagtaa aaattayaya tatagcaata ttttccawcg 6301 tagattcaca cacaatgcca caragaattt gagaatcttc aacagatcta ccaatgccgg 6361 ataaatattc actcacctag tkaaagacga agaaaattga aggtcgacct gagagagaga 6421 sagagggaga gagagcaaat gcgttcgaga tgagccctag tycctagaaa cgtctatata 6481 tgcgactgaa ggttgggcgt ggggatcgga cggaccgggy tgtttccctc cttttatctt 6541 ccacaccgtt ggatgccgtt ggatgttgaa gacrgacggt gcagatgctc tttactgttg 6601 tactaaaacg aagatttgat tttcaaaaac aattcagatg cagtgacwaa ttcgcccttt 6661 ctcgaaatga ctggactgcc ctttgaccag agcgtcaaaa aatccaatcc ttaccttcag 6721 gaaatcgcgg ccagattctt ccccatatac gacaaggctt aatyttcatc caaaaaaaaa 6781 aamaaaagca yacatacyat gggaaattca aatttcyggg ttttcatttt catttttatt 6841 aggggtaaaa tggtacttaa acttaatmcg aaaattaaaa actaaaatca aatgaaaacc 6901 tagatttttt ttcccaaatt gaaaattgaa ttgggcccct tattaagtgg catgagagaa 6961 tcatggcgca tttgstaagt gacttcaacy actatatctg ttgttgggtt agcttcatgc 7021 atcacgtcaa gaaagtaaaa tgtcccatta atcaatttgc tttaatygaa tttaagggct 7081 ttttggacac gtatgaggtt tggtgaccca acatttaccc atcagaaatt ataaaatgtg 7141 tgaaaaatgt ttaaattata gagcactcca aaaagtgggc ccactcatga cttgatcggg 7201 aggtcggccc tttccaccat cttaaaaggt agctacctaa ttattttttt cctctttttt 7261 tttttttttt ttaccaataa catttaatgt tatttgtack ataattataa actttctttt 7321 gcatcaacta ttttataatt attttatttc acccccatcc ttttcatcta cattattctc 7381 atggaaatat atgactatat aaatgagtat tttatacatt atattataat ataacatatg 7441 ataatatgag catttggctt atcattggtt ggaaaaaaat ctctccctcc tattgaggtt 7501 tgtcatttaa agtaatggga taattacaat aaagtgtagg caagtgttat aattgcttta 7561 aaaatatata tattgcataa ttgctctcag gtccataaaa gtatttggat aaaaacataa 7621 tttatcgttc acatattttt atttatatgt ttttttatcc ttgtaattgt ttctaatatc 7681 aaaccattat aaatattatt ttcatatgta taaaatgtta aatataactt ttttacttac 7741 attttcacca cacacaaaac acttatatca aatatacaaa atatttgtat tagatataca 7801 agatttatgc aaatctatcg gttatacatc tatttatgta tttttttatt attttatttg 7861 ttttttcata tcgttrgaar cgcratttaa atacatgtat aaacgtcaaa tatactaata 7921 tatattcaca tatataccaa aaaacttatt ctaagggtat aaagtatttg aactagttat 7981 acaatgcatg tgcaagtatg tttattgtca atatatttac gggttttatg gatatcaaat 8041 aaaaaaaaat gtaagtatgt atatgtcttg tacatttaat atgc //