LOCUS AM433095 10583 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X203937.23, whole genome shotgun
sequence.
ACCESSION AM433095
VERSION AM433095.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10583)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10583
/organism="Vitis vinifera"
/chromosome="9"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(4096..5025,5146..5763)
/locus_tag="VITISV_042422"
/product="hypothetical protein"
/note="GO:0005506 GO:0046872 GO:0004497 GO:0016020
GO:0016021 GO:0006118"
/note="highly similar to EMBL:AP008209"
/db_xref="GOA:A5ARJ8"
/db_xref="InterPro:IPR001128"
/db_xref="InterPro:IPR002401"
/db_xref="InterPro:IPR017972"
/db_xref="InterPro:IPR036396"
/db_xref="UniProtKB/TrEMBL:A5ARJ8"
/inference="similar to DNA sequence:EMBL:AP008209"
/protein_id="CAN78219.1"
/translation="METLYMCIPLCLALYLFTKHLLHKLHNLPPTPFLSLPILGHLYL
LKKPLHRTLAGISSRYGPIVFLRLGSRPSLIVSSPSVAEECLTKNDIVFANRPQLIAG
KYIGYNYTSLXWANYGDHWRNLRRISTLEILSSSXIQMLSGIRADEVRLLVXWLLEHE
NQTVNMKAMLFEITTNVMMRMIAGXRYYGGSMXEAEAEETVKFREIMADTIRLGDMSN
IGDYLPMLRWLGVKGKEXGLRELQRKRDRFMQSLIEEHRTRXAKDKESSSSCCNGDDG
EXKKKKKTMIEVMLSLQEKEPDYYTDXIIRGLMLXLLGAGTDTTATTIEWTLSLLLNN
PHALKKAQMEIDNHLGDNHLIQESDLNQLPYLHCIIKESQRMYPVGPIIPHESSGECT
VGGYRIPHGTMLLVNJWAIQNDPRVWEEPRKFMPERFEGXELEKHGFRLMPFGSGRRG
CPGEGLAVRIVGLVLGSLIQCFDWESVGEGMVDMSEGTGLTLPKAQPLLVRCRPRPAF
VDLLSKA"
BASE COUNT 3471 a 1806 c 1690 g 3553 t
ORIGIN
1 cgtggtggtt gggatctatt gattcagtgt ctttgagtta gggaaagtgt aggtgaaggg
61 atggtggaca tgagtgaggg actggtctta ctttgcctaa ggctcagccc ttgttggtta
121 ggtgtaggcc tcgtccagcc tttgtggacc ttctttccaa aagcttgaat cagttgtctg
181 ttttatcata tacacaatgt ttgtgttcat gatattaatt gttgttggga tggtgtatat
241 cgaagtaaca ggtttgaggt atttgtagtt aattttattt tcttgaaaac ttcgaataaa
301 atttatattt cttctactaa tattaagttg tgagttttag agattatttg agcttatact
361 tgatgtggat attgaaaatt taggaaccag tacccctagg aaggagaaca tttaaggatt
421 ttttaccaag agaaggacga ggcattggag aaatgaagaa caaaaaccct tgttagaaga
481 gaaatcataa tgcgtcttct tgtttaatgt aattttcaaa attttcaatc ataagttgaa
541 tgcttaatgc aactctctca acaagtttgc tacttctcta aattttcgca ttaggcaaac
601 aaataatgca ttagcattaa ttacaatatt ctttgttatt aattagttta atttttaagc
661 ttcaaattat ttttaaaaat tattagactc aataacaaat ctaacatgtt aaagttttgc
721 ttgatttaaa aaactataat tctatgtaga gaaaaaatta acataattat tttgaactaa
781 ttttattaat ccatgaaaat catgtaatga cccgcactta atcccgtaag tattgttact
841 cataacttta aaacatgttt ataaagttaa gagtaaggat gaaaatttca gtaattatgg
901 atatatcaat acttccattt tataaataca ttgaagatat atgatcggat attttgacac
961 gaaatattgg tgaactgaaa atagattaga aattataaaa atgtaagaaa aaacttataa
1021 aaataaaatt agaagtatta tagatatttt aaagttgttt tattcgagaa attgatatat
1081 atatatatat atatatatat atatatatat ataatttatc atatttaata ataatattat
1141 atatgctaat aaaaaaaaat gaatttcata agtatacatt tattattaaa ttatataaaa
1201 tattattcga taatactatt gtgatatttg attataatat gtttaattta aatatatatt
1261 taatattaaa attataattc atttaattca attgtattaa atgatataaa ataaatgatg
1321 atatatgtat aatttttaat acttaattaa tatattaatg atatgaaaaa cactatgaag
1381 aaaattatca caataatttt tatatttttg gtattcaaaa ttttttttca ttgaattata
1441 aaataattat aattaattta ttctttaaaa cttttttttt taaattatgt ttatatgatg
1501 aatttgagtt catatatagt tggtgcaatt tatataataa ggggcaaact tgcccccgta
1561 gttggcttaa cgcaaggtaa accttttggt tggggtccga gcccctacaa cgacggaaat
1621 ttgaaatcac tgccccaaaa tatgcaaata atcggtgaaa tttatgataa attgctgaaa
1681 tatcgagata taaactagga acttgaactc tctatgtggg atatcacaaa cacccccatg
1741 caaatacaat gttctcattg tatcccatgg gattgtaagg ccaaagagac aaacaccctt
1801 tatgagatca aacaaactcc cacattgagg tcaagaattg gttcaaatat catttgtaat
1861 gagctacacc caaccgtgta gatattattc gttttggttc caaatggatc ctcaaaactt
1921 ctcattgagc taaataaact ctcatactag agttggagat tggttttaat accatttgta
1981 acgatcctaa ctatatagat atggttcact ccagcttaaa ggagtcctta cgattttaaa
2041 atgcatgtct acattgttaa gagtagttta tacttatata gtattaaaaa cttttyccct
2101 atttgatgtg ggatgtcaca aatcagatgt tgattgttga tttttttttt tttgtaaaat
2161 tgagaaaaaa aaattggttt tgttaaaaaa aaaatgtgaa ggcttatgtt aagtgatcaa
2221 gctcagtgaa tcttttgagc aaaatgaggt aattttgaca taaattacta tttgaataca
2281 ttatattatt taattatttt tttgcccttt caatgtacct ttccatactt ttccccagat
2341 ttttgctcag atagttttgt tgtggaattc tcttggtact gattttcctc tgattccaag
2401 tatgcatacg aggcacacaa gaaatatacg ccaattggta taaaaaacga gtagagagca
2461 ggatatgcct tgcagaaaat atagaccggc gggttgatgc atgtcaaccg atcagccgag
2521 tcgaatcttt tgagctggcc agcatggttt aaagttagga tatcaatcat tgattcgaag
2581 ggtcctatct atcttcatgt ctcaattcgg tatgaagtta ggatatcaat cattgattcg
2641 aagggtccta tctatcttca tgtctcaatt aggtaataca taaaataaga taattaaaaa
2701 attttaaaaa ttataaaaat attatataat taaataaact taaaaaatta ataaaattaa
2761 tttttttttc acatttaact caaagttatt tacaataata ccaaaaattg tggatttaat
2821 tcacattcta tcatataaat acatttaatt tatcattaaa tcctatattc cataccacct
2881 tataatttta ctttagcaaa ttgggactca attctcataa tttgttatca ttaataaagc
2941 atatgtcata ccaaaggcat ttttaaatta ccaatttcag ctcccaatct cccaccctcg
3001 cacaccactg ttgttgctgt caagacccac aaacggcaat ccatataaaa ggcattttta
3061 gattaccaat ttgagctcct catctcccac cctcgcacac cactgctgtt gctgtcaaga
3121 cccacaaacg gcaatccata taaaaggcat ttttagatta ccaatttgag ctcctcatct
3181 cccaccctcg ccactgctgt tgctgtcaag acccacaaac ggcaatccct ataaaaggca
3241 tttttagatt accaatttga gctcctcatc tcccaccctc gcacaccact gctgttgctg
3301 tcaagaccca caacagccga caccagttgc tgtcaggacc cacgacagac cacaccattg
3361 ctgtcaagac ccacaacaga cgacaccacg tgcaattatt gcaaatttgc aactatgcaa
3421 gacccaacac tggaggagga gcaatccgac tgtgaggagg ttgctttgcc gacgtcgccg
3481 tggtaagatt cagtccactt gacgagtcac caccgccgac accaaagctc catcctccgg
3541 taagtaaatc ctaaatcatg cccagtcacc agttgtaata ttgcggctct atggtctata
3601 ccaacatcaa ctgataactg atagtgagat gaaaagggaa gacatggaac gcagccttag
3661 tttaggtttg tcccaataaa caattattaa gcacttcacc taccttatta tatataaccg
3721 attaaccttt tcaaattcaa gactaccatg tgggattcat gttgatttgt tatgggacaa
3781 acaaactggg ttgaatacag accaaatatc aaaatttatt tttcttttaa ttttcctctc
3841 tattttcttt ctagtgttaa cttacttcaa tcartgtgat gatatttgct ttcttgaatc
3901 taatttacag gtttccaccw tatcgatctc aytgtccaat tgggtgtgct tasacttctt
3961 caatattaat ttctactcat cttaagaccc aatgygaagc caaaaaaaat agtggacaaa
4021 tggttcgtaa accatctata taagtcgata ttaggaacca tattcctccc acactcacat
4081 agaaaaatta caaagatgga gacactgtac atgtgtatac ctctttgctt ggccttgtat
4141 ctcttcacta aacacttgct tcataagctt cataacctcc caccgactcc ttttctctct
4201 ctccccatac ttggccatct ctacctctta aagaagccat tgcaccggac cttggccggt
4261 atttccagcc gctatggccc tatagttttc ctccgtctcg gttcacgccc ttcccttatt
4321 gtttcttcac cttctgttgc tgaggaatgt ctgaccaaaa acgatatcgt ttttgccaac
4381 cgccctcagc ttatcgccgg gaaatacata ggctacaact acaccagcct crtctgggcc
4441 aactayggcg atcactggcg gaacctccgg cgaatctcga ccctcgaaat cctctcctcc
4501 agtygcattc agatgctttc tggaattcgt gctgatgagg tgcggttgct ggttckctgg
4561 cttttggagc atgagaacca gactgtgaac atgaaggcga tgctgttyga gataacgaca
4621 aatgtgatga tgagaatgat cgctgggarg aggtattatg gcgggagcat ggsggaggcg
4681 gaggcggagg aaacggtgaa gttccgggag ataatggctg acacaattcg gctgggagat
4741 atgagcaaca tcggagatta tttaccgatg ttgaggtggt taggggtgaa ggggaaggag
4801 ragggrttga grgagttgca gaggaagaga gataggttca tgcagagctt gatagaagag
4861 catagaacaa gaatkgccaa ggacaaggag tcatcttcat catgctgtaa tggcgacgat
4921 ggagagaasa agaagaagaa gaagacgatg attgaagtga tgctgtcrct acaagagaag
4981 gaacctgatt actatacgga ccwgatcatc agaggcctca tgctggtagc swatttttat
5041 atatgctttt gttcccattt gtatctaata attacataaa tttcagtatt ttttaaataa
5101 gtcaacctaa tttatttaaa atttaaatat tgattgaaca tacaggytct actgggagct
5161 ggaactgata ccacagccac gactatagaa tggacactat cacttttgct gaacaaccca
5221 catgccctaa agaaggcaca aatggagatt gataatcatc tgggggacaa ccatctcatc
5281 caagaatcag atttaaacca gcttccatat ctccattgta tcataaagga gtcgcagcgc
5341 atgtaccctg taggcccaat aatacctcat gagtcgtccg gcgagtgcac agtaggtggt
5401 tatcgcatac ctcatgggac gatgctactt gttaatmtat gggctataca gaatgaccct
5461 agagtytggg aggagccaag gaagttcatg ccggagagat ttgaaggcat rgaactggag
5521 aaacatgggt tcaggctaat gccatttggg tcaggcagga ggggttgccc tggggagggc
5581 ttagccgtac gtattgttgg gctggtgttg ggatcattga ttcagtgctt tgattgggaa
5641 agtgtaggtg aagggatggt ggacatgagt gaggggactg gtcttacttt gccaaaggct
5701 cagcccttgt tggttaggtg taggcctcgt ccagcctttg tggaccttct ttcaaaagct
5761 tgaatcaatt gtgtcacttt tatcatatat aatgtgtgtg catgatatta attgttgttt
5821 tggacggtgt atgatgtaac aggtttgagg tatttgtagt taattttatt ttcttgaaaa
5881 ctttgaataa aatttatatt tttttttatg ctaatattaa gttgtgagtt tttgagatta
5941 tttgaggtta tttgagctta tatttgattt tctaatcaac aagaacaagt ttgtgattat
6001 attttatttt ccgtactacg gaaaaaaact ttgatattac atttgattct ctttcaattg
6061 tagtttaatt gacgaaaata tatccacaaa actcatattg tcccattcta tatcaacaag
6121 accttacctt ttttgtacct cattccctta gcttctgtac ctcttttgct taggcaaaaa
6181 aaggtgtgta ckgatggttt ccaggcaaac cttcttttac ggataagtta atatttctat
6241 attttgtgct atttgaaaaa tgaaagaaaa atgtctgccc ctttttacct tgaattatca
6301 tcggaggagt tgtttgtaac ccttaacact attcattggt tttttttttt ttatcctttt
6361 taaggagttt tgacccaaaa taggatattt aaataaataa aaaatcaaaa agtaaaccga
6421 tttccaaaat aatgttcagt ctagtgcatc tgtgccatat aggagtctag gtcaagaaac
6481 cgtagttacc aattacgatt ttaaatattt tttaaatcaa tcaaaatcgt agttaccaat
6541 tacggttttt aaatggtctt tacaaaagag gaaataacat caaacattat tctgctcata
6601 gtaacacaaa aaatatatgt ccatataaga atatctccta gtttttatgc agggtaaggc
6661 aatgttactt gcaccaccta gttttgattt tgattccaaa attgctggcc cataaattga
6721 tggatccata ggcaaagatt ttttaatagc acccatgtta acttyrccwt tgatgtccta
6781 taaattccag aaaaaaatca cggatgcatg gacaaataaa caaaaaaatt gaagctaaaa
6841 taaaatatta arcaaaacta tgagaagata aggtcattgg caattggtta tattggagaa
6901 tagagtctat tcctagaaaa tcacaagaat gagttgtatg gactcggttc atcttgctcc
6961 cgaacactga aattactgaa ttgttctctg caatacaaga aaatcaaaag gaattcaata
7021 agtcataata ttttgaatga tgtacaatgt ttttataata cggaaaaagg cacacttgca
7081 agtttttgag tttgctctag tgtaagcata gctgagaacc ctataaagct tttactataa
7141 ttgtgaagtg tcactgcctg tgccctatca acactgaaaa caatccacca caacatctag
7201 aatcatagaa aaacagatca aatgttacaa tccacgctat caaaatcaag tcaggacata
7261 gaaaaccagt agcctattct ttttagggat matggtttct taccttccaa taatggaaac
7321 tagcatctca tggttaatgc cctatcaaca tctcatggtt atnttgacaa tgactcacat
7381 tgtaaaggaa aatctgatat cattttctgg agttctaccc cacccaaatg gcaagtcaat
7441 catgcacggt tkagtattac tttccaaaat ttggagaatg atgtaaaaat tgataacaac
7501 cccacacctc aacctcttag cttaagataa agccctattc attggccctt gaaaagagga
7561 gtactatttt ttcagttcct ataacaaaat ttgcattcat ccccttcatt tttggagttc
7621 ttaagagcgg tccccttcat atttggagtt tttaacagtg gtcccctcca tttttggagt
7681 tcttaaccgt ggtcccctct atttttggta tctttaacaa aaacaattca tggtggccct
7741 ccatttcata tccgttttct ttaccaaaac aaaacatttt tctttctacc aagctcacaa
7801 tgaaaataaa ataaaataaa ataaaataaa aaaccaaaca catctttacc aagctcaaga
7861 tgaaaataaa ataaaaaacc aaacacatat acaacaacaa actaaaatat gtgaaaacca
7921 amyagattta yaaaaaataa aaataaaatt tacgtaaack gaaaaactca taaatcttaa
7981 ttaccttacc agaacaatat gaaaatttgg aaaatattga atttaagcca aggatgaacc
8041 aaagacaact agatgcaacg ggagacaacr aggatgacga ataagaaggy aaaaccctaa
8101 aggtaagaaa cctaacctaa aagggaaagg aactraaaat gattcaaaac cgtaattgat
8161 agctaagatt ttgactgatt taaaaaaaaa aaaaaattca aaactgtaat tggtgactac
8221 ggtttcttga cctagactcc tacatggcac agatgcacta aattgagtat tattttggaa
8281 attggtttac tttttgaawt ttttttawwa aatatcctat tttgggtcaa aactcatatt
8341 tctaactatt acactttcct tatacttcac actacttacc tggacatcat ttgtctacct
8401 gggtggtgtg agtacccgaa cagaccttac ctgaacaatt caacccgact tgccaatcca
8461 ggcttgggtt ttcttgggaa tatttggctc ctcccataaa taccgtattg tttatgaaat
8521 tatatcattt tagataacac catatcgctt tatgttgata ttaacacttt ctatcttttc
8581 tctccttatt ttttctttag gttatattta gctcctagaa agtatcaaag aaagaaaaaw
8641 aattaaagaa aattcttttc tcgtatttag ttatatcatw aaaaatacaa wwwaaatcaa
8701 atagaattta aaattagtta aaaacttatg catttttaaa ttatttaatt ttatatcaaa
8761 taagtttgaa gtatcgtata aaaaaaattt atgaacttta actttatttt ttatttcttt
8821 cacttttcgt ttctttctat ttttcctctt tatttcattc attgcatttc tctcaaattt
8881 ttcaaaaacc aaatatagtc ttaatgtttg tataaacaat agaaaatctc acaaacttag
8941 gacaaatgga gagataaatt waaacttcct ttatataatg tcgattgagc ttacctatca
9001 agaatgtgag attgaataga aactttaatg caagtatatg actttagtca tcctacctta
9061 tccacgattt actatattct tgactttaat attcatcata ttttgagata aagtaataat
9121 acacaattag aaggacaaat ttgatcataa atattctcaa acttatgatt ttttttttgt
9181 caaataatta tattgggttc aatatttaaa tttcaaatga tgcatcgagt atttataact
9241 ttcaacattt atatttaacc attaattttt aattttattc aatattccct taatgtttta
9301 taataattta tctacaccat actaggaata ctattagaag aaattgtcaa tattaaatta
9361 tttgattaaa ctttttaaaa aaaaaatttt aaaaattatt atgatctact ttaagaaaac
9421 acctacatgt taattaatgt ttatctttaa tatttatttt ttattatttt aatttaaaat
9481 agaagataat gattactagt ttacattaga gtagaagata gattcaaaca ttatttgtat
9541 ataattattc atcattcatc aataagacgg gaatgtcata ttttctcaaa ttttctctct
9601 ttttatagta tcaaagtttg tatattcttc cttctatata tgatatcata atatgtcttt
9661 atatctatct gaagcaaatt taagatcttg aggcctatat attgacaagg atattcttaa
9721 cctcccttac tctaagttcc cttaaaagta agttgaaaac cttagttctt tttattttta
9781 ctcacctttt ttcttaggga gaattgtgtt ttgggcccag ctgggcccaa aaattaagga
9841 atggtccatc taactaacta aattaatgat aaggatatca aatgttaaca gacgaaaatg
9901 ccctttacat ttccaactca aaattgttgt aaaataatgg tttcacagct ggtaaacgtg
9961 aaatgccatg tcaccagagt gaaaattctg aatcttccta aaaaccactc acatataccc
10021 tctccttcta ctctctttct tgccggagtt tcagtttctc cgttcaaccc caastcttct
10081 ccggccaatt cttactcgtc ccaccattct ttccttcaat tctcaccaga gtttgctcct
10141 tttccaccaa agttcactcc tttttcacga aagctcacaa ctttttccca cccgagaaac
10201 cattttccgc tcaaacaaac aggattttct ccttttctgg tttatgggat ttcgacatag
10261 ttcctaaaaa gagacacttg agagggaact aaggttttct ctgtatacac aaaagggttt
10321 ttagagagag aaaacagagt gcagtttcac tgagccattt ttggtttgct ttgaaggaaa
10381 ttttttatgt gttttggtga agattttagg gcctaaagct tcagattatt tgtttggcaa
10441 tgcagaaaat atattctggg tgtagttttt tctcatcwtc ttcaytttyg tagtaatttt
10501 ttycttcgtw atatggyctt ttgwwtycyw cagaataytt aatttattaa ggtttagggt
10561 tagttaatta gtttggtatt agg
//