LOCUS AM432877 8680 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X224995.5, whole genome shotgun sequence.
ACCESSION AM432877
VERSION AM432877.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 8680)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..8680
/organism="Vitis vinifera"
/chromosome="7"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(49..321,367..1668)
/locus_tag="VITISV_012979"
/product="hypothetical protein"
/note="GO:0003677 GO:0003676 GO:0016787 GO:0008270"
/note="partially similar to EMBL:AP008214"
/db_xref="InterPro:IPR013103"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5ARC0"
/inference="similar to DNA sequence:EMBL:AP008214"
/protein_id="CAN75946.1"
/translation="MSNYVSNHRFSESNKSFVNQLSTVAIPNSVQEALANPRWKAAMN
EEMKSLQKNETWELIECPPGKKSVGCRWIYTVKYKADGSIERFKARLTFAPVAKINTV
RVLLSLAANLDWPLQQFDVKNVFLHGELSEKVYMDLPPGCMVSEKQCQKVCKLIKSLY
GLKQSPRAWFGRFPKSMRAFGYRQSNSDHTLFLKKQHGKITTLIVYVDDMVVTGNDPE
ERKALQNYLFREFEMKDLGPLKYFLGIEVSRSSEGIFLSQRKYALDLLQDTGMSGCQP
VNTPIEEGLKLCLKPNQVSTDKGRYQRLVGRLMYLAHTRPDLAYALSVMSQYMHNPGE
QHMNAVMHILRYLKNASGKGILFAKNVDHQSIEVYTDADWAGAVDDRRSTSGYFTFVG
GNLVTWKSKKQNVVARSSAEAEFRGMALGLCEALWLRLLLQDLGYLSKQPIQLFCDNK
AACDIAHNQVQHDRTKHVEVDRFFIKEKLDDKIVELPKIRSENQLADILTKAVSSQVF
SKFLDKLGMCDIYAPT"
BASE COUNT 3014 a 1367 c 1740 g 2558 t
ORIGIN
1 ttctaaacca catatgaacc tgaattgcct actaaagtca aatatcacat gagcaattat
61 gtgtctaacc atcgtttttc tgaatcaaat aagtcatttg taaatcaatt atctactgta
121 gctattccta acagtgtgca ggaagcctta gctaatccaa ggtggaaagc agccatgaat
181 gaagagatga aatcattgca gaagaatgaa acatgggaac tcatagaatg tccaccagga
241 aagaagtcag ttgggtgtcg ttggatctat actgtgaagt acaaggcaga tggtagtatt
301 gaacgattta aagcaagact ggtagcaaaa gggtacactc aaacttaagg aattgactac
361 acagagacat ttgcacctgt agctaaaatc aacacagttc gagtattact gtctttagct
421 gcaaacctag attggccatt acaacagttc gatgtgaaaa atgtctttct gcatggcgag
481 ttgtctgaaa aagtatacat ggatcttcca ccaggatgca tggtgtcaga aaagcaatgt
541 cagaaggtgt gcaaattgat aaagtcattg tatgggttga agcaatcccc gagagcatgg
601 tttggaaggt tcccaaaatc aatgagagct tttggctatc gtcaaagtaa ttcagatcac
661 actttattcc taaaaaagca acatggaaag attacgacac ttatcgtata tgtggatgac
721 atggtagtta caggaaatga tcctgaagaa agaaaagctt tgcaaaatta tctatttaga
781 gaattcgaaa tgaaagatct aggtcctttg aaatactttc ttgggattga agtttctcga
841 tcaagtgaag gaatttttct gtctcaaaga aagtatgcct tagatctttt acaggatact
901 ggaatgtcgg gatgtcaacc tgttaataca ccaatagaag aaggtctgaa attgtgtctt
961 aagcctaatc aagtatcaac cgataaggga agataccaga gacttgtggg gagattaatg
1021 tacttagctc atacaagacc agatcttgct tatgcattga gtgtaatgag tcaatacatg
1081 cataatcctg gagagcaaca tatgaatgca gtcatgcata ttttgaggta tttgaagaat
1141 gcttctggga agggaatttt gttcgctaaa aatgttgatc atcagagtat agaagtatat
1201 actgatgctg attgggccgg tgcagtggat gataggcgat ctacatctgg ttactttacc
1261 tttgtaggtg gtaatcttgt gacatggaaa agtaagaagc agaatgtcgt cgctcgttca
1321 agtgcagaag cggaatttag aggtatggct ctaggacttt gtgaggcatt atggctaaga
1381 ctcctcttac aggatttagg ttacctatct aagcaaccaa tccaattgtt ttgtgacaat
1441 aaagccgcat gtgacattgc tcataatcaa gtacaacatg atcgtacaaa gcatgttgag
1501 gtggatagat tcttcattaa ggaaaagttg gatgataaga ttgtggaatt gcctaagatt
1561 cgatcagaaa atcaattggc cgatatcctc accaaagctg tctcaagtca agtgttctca
1621 aaatttttag acaagttggg catgtgtgac atctatgcac caacttgagg aggagtgttg
1681 agatattagg aatgcttttc ttatatcatt atttccttat atcatttagt gttgagatat
1741 tatgaatgtt tagatattat gaaagttgag atattaggaa tattgagata ttatgaatat
1801 tgagatatta ggaatattga gatattatga atattgagat attaggatat tagatgttat
1861 ttctttatat cattctttac ttgtatcatt ctttctcatt cttagaatga tgattaccct
1921 ctatatatac tctatacatg aacgaatgaa agtatgaatg aaaaaactat catttatcaa
1981 tttgaagact tcctccccaa tctcacccta tcaatgcgtg aagaaagtat caactggcat
2041 ttgctataaa atcctagttt ctcgaaaaaa aatttctcct caatagacga gggattgcaa
2101 aatggaagca gctgtacatg taagcattgg atttttcgtt tttttttttt attcttattt
2161 atcatttgct tgatccgtaa tgttaacttt catacatata atttaaagat cttccagtga
2221 gtcttttaat gttcgaagtc ctactctctt ttatgcattc cttaataatg atgggtatga
2281 aaaatgtttt taaaattatt tgtgacacca cccctgcttc aacagtgaaa tctaaagagt
2341 aaggataaaa attgagggta caggcatcat aattcaccca ctattggtca tattcatatt
2401 tgagttaggc tatacatttt cccgatcccg tccgctgtgc cagatttggt cacattaaca
2461 gaaatttagt tttagcattt ttcacactag aactgaatcc agctggccca tattttaaaa
2521 tgattagggt tggccaaggc acaggcttgt gttgaccgat gaagttcttc caccaaaaaa
2581 atgaaaatgg agtcagctgc agttcgtaac aatctggaaa ttcctattac agcaaggcat
2641 atcagaacca gcaacatcac ttctctatcc caaacaagag aaatggaaat agcaggattt
2701 ctccaaacaa caaatctcta cctgaagcaa aactttaaaa caggtgggtc ctgcaagagg
2761 acagcacact ttctcctgca attgagccac cacataaaga taaatattta cgtttgttta
2821 tatatataag ttatatatat aataacttat acttatcatt gagccaccac gtgtatgtat
2881 gtgtgtatta tattatagaa taaagtgatc tcatagctta atgattcaat tatttcatgg
2941 tctcgagtct tcctaatgca aaaattattt ttcgtacctt ataagcaatc ccatgtataa
3001 gaatatgaag ctaataggtt gtacaaacac atcacaaacg agttggctca atggtaggtt
3061 gctagcatta ttggaccaaa agctacaact acccattacc attttgggtc aaataagact
3121 tgttgattct tagagaaccg actaatctac ctagctcaaa caattcaata ctagtctaat
3181 tcataagcta ctcaactaag ccaatcaaat tggagagctc aacagtctag tctattcaat
3241 gaagttttca aaaccttaat atgcataaat aacttataat aaacttgcaa tcttttcttc
3301 tttacttgag agaaagagaa tgtcatgttg atttcatgac ttctaaattc aatgacttta
3361 aataataatg tcatttttct ctaactttct ataactcatt gtggacctcg catttcgact
3421 catgcgttcc ccactcgatg gcgagctcga tttttttttt gaaaaattga ttcatttatt
3481 taattgaaaa aaattgactt ggagtcttca cttatttttg ttttattttt aaagggtaaa
3541 cagaatgaga aagaaaaccc taagtgtgac tccttatttt ggaaaatgtg gtctgcgaaa
3601 aaccggatcg ggttcggggg tcaggttact tattagaaag gtatagtaaa aaccgtagca
3661 cccttctaag tccctaaaaa cgggtctcta ctaataaaat ggagcaatca tgacaattaa
3721 ttaatcgagc atggatactg aatgaatatc actcaaaaca aaataattga atgaatagga
3781 gaggcaaata atgtaccgag tgatgaactg gtttacttcc acaaaaacaa atgttagcaa
3841 ttaaacataa aataatcgtg tgtgtattat agaatagtgt aaatcaatca catatagcaa
3901 tcaaatcaat caatcctcca attgatcata aaatcacgta tgtggggccc ccaccaaagc
3961 ccgattgatc ttgcatgaat taatctcaca aattccatta ttttggaatt atgaaaattc
4021 ataattcttg cttatgtaaa atcgagataa atagaagatt atttgaaacc cgaaaagcat
4081 taaaaccgtt aaagagaaaa ctggattttt gaaatttatt tgaaaattgg agtcttggga
4141 attaaattta agaattggaa ttttgaaaat aaaatttgaa aatcgaaatt ttgaagaatt
4201 gtttaatagt ggaattttaa aataaataaa taaaataatg atgattaaat aaatttatgt
4261 gaaaattaaa atttcggaaa ctgaaattta aaattagaaa tcggaatttt gaagagttat
4321 ttaaagattg gatttaaaaa aaacaaataa ataaataaat aaaatgataa tgattaaatg
4381 aattgatatg aaaattgaaa tttaaattta gagatcggaa ttaaatttag aaatcagaat
4441 tttgaaagat tatttaaaaa ttgaatttta aaaataaacg aataaataaa taaataatga
4501 ttaaataaat tgatgtgagc attaaaattt tgtcggaatt aaatttagaa atcaggattt
4561 tgaaagatta tttaaagatt gaattttaaa gataaacgaa taaataaata aataatgatt
4621 aaataaattg gtgtgaggat taaattttca aaaattggaa ttaaaattta ttgaagaatt
4681 aatgttttta gaaagataaa tcatgcaaat tgaaaacaaa agggctaact tgaggtgggt
4741 atgggcttgg aatgggtatg ggccaactta aggtgggtga gcaaatcaac ttgaagtggg
4801 catgagcttg gaatgggcat gggccaactt aaggtaggtg aaaaaaatca acttgaagtg
4861 agcatgggct tggaatgggc atgagccaac ttaaggtggg tgaactaagc aagaggcttt
4921 tcatcaacac atacgggcct gggctccaac ttaagctcat atctccaact gaaaacaaac
4981 aaatgggcat gggccaactt gagatgggaa aacaaaataa agggtctttc atcaacacat
5041 acgagcctgg gctccaactc aagcccacat ccccaactaa cagctactct aaatgagcct
5101 catgttgccc ttaatgcctt aacctctctt ttctttcatg cacaaagcat aatggtggac
5161 tgaatggagg gggtttcaaa atcacctata gtcgaaatgg gggttcggat ggttggatgg
5221 tgtagagaga gaagacgtgg gcttgagggg cttggtgggt gtgagcatat gcatgaaggt
5281 acaagatatg ggtatggttg tggtgtagag agagataggt agtgatggca tacacatgga
5341 cgtgaagagt gtagagatca tggatgtaga tatcatgggg tgaagtgtag ccacaggtag
5401 tgagagaaat ggcatgtggg cacctaaagc ataacatatg agaagagtga agatgggtag
5461 ggtgagagaa tggtttgcat gagtcccata cacgtggatg ggtgaattgg aagagctttg
5521 gacagccatg catgaggcaa gaatgggcta taggttggtg gagtgagtgc atgcaatggt
5581 tgaagtggcc atgcatgggt gggagaaaat gggtgacgtg gctatgcatg gccatgcaag
5641 aatgggatgg agcaggcttg gcgggtatat gaaggatgag aacgcatgaa gggaaggtat
5701 ggaaagtgga atgaagtggt tggtgagtga gaaatagaaa tgcatgaaga atatgtgatg
5761 tagagagaaa aaaggtggtg ataaaaaaaa tgggtaaatg agggagtatg aaacatgggt
5821 atgagcgtgg ggatatgggt atgagatatg gatatggata tggaagggtg tgatggatgg
5881 ccatgcatgg ccacgcaaga ccatgcaagc atgggtgtaa tggcaatggt ggttaaggtt
5941 gaaagaggaa gtgggcttga ggggtggtag gggtgtgaat taagggctca tgaaggcatg
6001 gtgaatatgg gtagtgagaa tgacgggttt tattgggttt agaaagaatg aaataataag
6061 ggtggtggta aagagagcta ttggcagtgg ccacgaagag agagaaatgg gtttgaatgg
6121 ttgaataagt atgcagcaaa atgagttgga tggaagctag gatgggtgtg catgcagggt
6181 ccttatgcag atgggtaggc gacaggtagc tgggttacaa gtggggtatt gaaccgagaa
6241 ttctgatgca tgccatagat gggaaccaga tgaatccata caaaccccat tctgatatta
6301 aaaaaatttg gatacaatgg agaaaagaaa cactctcaaa cactcatttt gatacaataa
6361 aactctcaaa gttacaaaat aagaacaaga agaagaagaa cacaagaaag gctcaaacaa
6421 gttcttggaa ctttgtccaa agactctatt tcctcccacc tctagaaatc tttagggaac
6481 taatggaaat agttttggga ttgatcaagc cttttcactt ttctgcataa gatttcaaaa
6541 agaagaaaag tcatatatag cactcttagg gttgaaaatg gttacaagga tgagaaaaaa
6601 ctcagtgtct tcctcaatct cttcatcttt gtaacattca aaaattaaat catatgttta
6661 attcacacat taaacatgat ttaatctcaa atgtgtaact ctcttacact taacctctca
6721 agttttataa agttacaaag atgagaagac tcattgtctt ccttaacctt tcaagttttg
6781 taacatttca aaacttagtc atgtgtttat tcacacatta aaagtgtaac ccttcttaca
6841 ctttattttc aaaagttatt tttcaaaagt gtaactcttc ttacacttta tttttaacca
6901 acaatatata tatatatata tatatatata tatatatata tatatatata tatatattta
6961 tataaatata acacattctg catgctcacc aatgagctcg gatgtaagaa gaggggaaaa
7021 caaacttcaa atgagtttta aaacaataac aaaggtgaga atgccaatat ctcataagag
7081 atctcaaaat gggggacatg aagcaagtta gagactcaac agcatgcaag cacaggcgag
7141 attaaattcc ataaaaaaaa cgagaatcat accagaagac atattcaaac gctaaaatag
7201 agtctccttg atacccaaat accataataa aagagacatg aacgtgggaa aaccaaacat
7261 tagaaatgat atctgagtct ccttctctcc agatgcttcc tccccaaaat ctctctgaaa
7321 atgtcttcct cctcactcgc ctcaaaacat ctcagttgcc aacccccaaa aaaaaaactc
7381 tagcggttcc cctgtttctc ttttcctgcc aaccatctcc actcctctgt tcacccgtca
7441 tccttctaaa gcccccaacc accaccatgg gcgaggtggt cacgtccata cacatgccat
7501 gcagcttggc tcttccggaa agaggtcccc cactccttca aaaggtgata gctccttcag
7561 gtagctaaga agggtctcca ctcgtgttat ttgggatgtt gtggttcaaa catattatga
7621 tggtaatgat gcttctcata tttctaaact tatggtcagg actacgtatt attgaatgta
7681 aagtaatcat ctaagaggga tgacgaatta ggtgatggtc tctttttata gctttaataa
7741 ataagaacta tgatgaatgc aagacacggt ttaattacta agaaagcaaa tataatggag
7801 gagcaattgc atatagaagt aaatagagat aacgaataga gaaatgcaag tatgagcttt
7861 tattgtaact taatgcaatc ttacatctac tctcctcaaa cttcaacatt aagagttcca
7921 ctaacaatac ttccaaccca agccttcaag ctttgcccta gaattgtggc ttcaagggat
7981 cctttacgac cataagaact tttaaaacca aagactgcaa actatctccc ttggattatg
8041 gttccaatgc tactcttgag tcccctagtg atcctactta gaaattctca caagatatat
8101 aaatgaaaca taataagatc ctagtttgta gttttggctt aaatggatgc aaagaaacta
8161 gaactaagag gtgccctaag ttgaaatgta agttttgaag caaaatgcac tcaaacacat
8221 agcttctcat caatataaga agtttagagc ctttaaacaa gagttaaaag cctaaagttg
8281 ttgttggaca aatttggggt caactgatca ttcaactagt caaatctgtt actgaccatt
8341 ggggaattgt aggtgatcgt taagccatag gagcttaacc aattgctcta tcaattcaat
8401 caacccttga ttggcatagg ctctaactca ataagttaaa actgcctttt ggaccttcgt
8461 aggacatttg gcccccttga tgagttgaac cattccaacc tagttcccat atttctcaat
8521 cgatttgaag aaaatgcgag tttcgatatc aaaatgaggt caggaaacaa ctactattat
8581 ctttcatttt ttggaattta aaaaaaaaaa tccacttcca atagcyataa tattgtttaa
8641 aagcactaat tacacttgga attgatggaa attatgcaca
//