LOCUS AM431656 10917 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X254758.5, whole genome shotgun sequence.
ACCESSION AM431656
VERSION AM431656.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10917)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10917
/organism="Vitis vinifera"
/chromosome="16"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(6339..6458,6919..7194))
/locus_tag="VITISV_030224"
/product="hypothetical protein"
/note="highly similar to EMBL:AP008208"
/db_xref="GOA:A5APQ7"
/db_xref="InterPro:IPR039175"
/db_xref="UniProtKB/TrEMBL:A5APQ7"
/inference="similar to DNA sequence:EMBL:AP008208"
/experiment="confirmed by EST"
/protein_id="CAN60468.1"
/translation="MDEGKQGVMVAAQNPIAQLQARFKDLENGFRAWLAKQSLPVEAA
VVTATSAAQGAAIGAFMGTLTNDATSAIPTPPQANLSPQAMASFKQAQALAGGPLVQA
RNFAVMTGVNAGISCVMKRIRGKEDVQSR"
CDS complement(join(9953..10307,10439..10497,10835..10903))
/locus_tag="VITISV_030225"
/product="hypothetical protein"
/note="GO:0003891 GO:0003887 GO:0016740 GO:0016779
GO:0005694"
/db_xref="GOA:A5APQ8"
/db_xref="InterPro:IPR003340"
/db_xref="InterPro:IPR015300"
/db_xref="UniProtKB/TrEMBL:A5APQ8"
/protein_id="CAN60469.1"
/translation="MKKNVRFNLPASDLKPSMEKEIKFIVDSHLREQWMKTARRQKSL
CLWLPMSRSRSSSKDRTPTLIFSKRLTFGDLLTGKLRVPSLVFLPKKHEGKHGRMMVP
FVDSKGEFWELEATPQWFSLNLDKFVKAHGLKCDDVILFYEDGPNSRYYVIDYERTGC
"
BASE COUNT 3871 a 2225 c 1593 g 3196 t
ORIGIN
1 atagaaaaaa ccaaaatatg taactttttc taaatagaaa aaataacata ttggtttttc
61 tttacttctt aacacttaat agaaataaaa tattacaaaa acaaacaacc taatctttag
121 cactattaag cattaaggtt ttatttagaa ttaagtaaaa aaaacaaata ccaccttagt
181 cttatctgac cctcccacta ttctttacaa agagaaatag gtattcaccc cacaattaaa
241 agataagtca agtttttttt tattttaatt ttataaatag ggcaacagaa aaacttaaca
301 aaaagagttg taaaccaagt acatgggaag aatacaaggc gaactaagat gaagacaaaa
361 agaggtaacc caaaataaac ataccaatag aaactgagaa accttcttac ttatcattac
421 caacagtgca acattcatac tgaaatgaaa gcatcactaa catcaagtta tataagatca
481 ataaggacat gggttggatt tcctaagagg ttgatctacc actgcttgaa tttctgttta
541 tatgattatg gaattgaaaa tgaacacata tagcagcccc catgggcagc tcaactagca
601 agcactccta ctcaggaata ggagatccca aagtcccgag cttactcaat acacaattct
661 tgggggaggg atcatatatc catagttttc cccatcctgg gaagcagcac tactagattc
721 catgttgtaa aaaaataaaa taaaataaac atatctagca ctttaattac tctagaaatg
781 atggattcct ttgtctaatt gctcacctga aatattccac cttgtataag tgcaaaaaag
841 agcccagatg taattacatt ggttgcctga ttcgggccac ccatgccact caccaatgaa
901 aacatggctc cagacccaaa agctgccacc atgctgcaat aatatttaat aatttttaac
961 aagcatacaa acataagaat aaaagcaaat gaggaaatga ttcaacaagt actaaagagg
1021 aatcgattcc atattacact tgaaatggta aggggatcag ctccatgccc tccatgcatg
1081 gatagtgaaa taatcctcaa tgcaatataa ccttttaaat ctattgattc atttttggtg
1141 gcttgtgcct aacaggaagg tcaatgttaa cgctttcctt tagcatagga ggcccttaaa
1201 agccttaaat cttgagcatt ttgttatgtg ccttagcaat ggtgagaaaa taggcttagg
1261 caatggtgag acaatagatc actttttcct tcaatgctaa gcacaaggaa gcaatggtat
1321 tgatgaaaac tgaaaaacta atacagctgc catccaagta gactagaacc aagttactcc
1381 aaccaccatt ggagccaaga tttcttaaag gggaaatttg gggaaaagcc ctgtgcataa
1441 acagaaacca gaaaattctg gataattact tagtatattt cttgagaaaa aagttcttac
1501 aatgagtagg ttcttccact tttataatac tagttctacg atataattaa tagcctttat
1561 atattcactt agtatagttc taataaaaca agaccgatct tatggcttct aatttaataa
1621 caaatttttt ccatgcaaac ctttcattgt tcaaacttgc aatcagttct ttattaataa
1681 ctgcattggg aatttttatt tttttttata agtaagaaaa tgtattaaaa ttgcaaaaaa
1741 aaaaaaaaaa aaaacatagg agtacactag aagaatacaa tgagtgaaag gagtaaaaca
1801 aaaaggaggg aacacaaaaa acaacaccct ccctcaagca gaacccaact aatctataca
1861 atcaattaat gacaaaaagc tcccattaat gtacacccga gcccacaaag caaagttgtt
1921 aaggaatgaa cttttaagcc tttgatctaa catcttctag tcttcgaaca ctcttacatt
1981 tctttctttc catatagtcc agaatatgca taaaggggcc gctctccttc ctacactttc
2041 ttcccacaaa aggaccttgc caccctagta gggtgtccct aattaaggca gaaataacct
2101 gacgcatgtc aaataaagaa aacaccaaca gcaataagat ccttgcctta gctcaatgga
2161 gaagaatgtg gtcaatagat tgcacctcct ctttacaaag agcacaccta ttgactaaca
2221 accaacccct tctttggagt tggtctaaag tcaacacctt tccccaccaa gcttaccaag
2281 caaaaaaact cactttagaa agaactcttg cgttccaaat aacccctaaa ggaaaagaga
2341 taacaaaatc tggttccagt aaagagtaag gggttcttac agaaatcttc ccttactatc
2401 gcctctccaa acaattctat cctcctgctc cctaatcacc gactaacctt ggagttgtaa
2461 gtagtaacct ctccacataa ttcaactccc agacatttag atttctagca aaatggaagt
2521 tctawacccc taccccctct atttgctccc ataaatatgc cacccatgcc tcttttgcct
2581 cgaataaggc aaataaaaaa aggacaactg ttttaacggc tcctcactac accacatgtc
2641 tttccataac ttcactctmt tcccatcccc aacaacaaaa gcgactctta agtagaagaa
2701 atctcactcc ttgcttatag ttttccacaa tccgacccca taaggttctt tcaccttata
2761 agattgccac ccccttcttt ctcctcatgc ttctccttga tgaccttctt ccaaagagtt
2821 tccttttcac ttgagtaatg ccaacatcat ttgcaaaaga aagccttatt caacaaagag
2881 agagaatgat taaaccacca ttttcctttg ccttacaaat agatgaccac ttcactaagt
2941 ggggtttgtt tgctaaggct cctcctccct caagaaagtc cctttgactt ttctctaatc
3001 tcaacctcat tgcacttagg atggtgaata aaaagatatg aagtaaattg gtaagctaga
3061 aggggtacta tagattagcg taatttgacc tccattagag atgtactgtc tcttccacaa
3121 agagagtctt ttgtggaact gctcttcatc tttgtcccaa attgcttttg acttatacga
3181 ggcctccaat ggaaggccta agtaagatga caatagttcc cctacatgat cttagcaatt
3241 gatctacata ttcatgccaa cgagtccaca ttatccactg aaccaaycga aatcatctct
3301 ctcctttcca aacttatctt tacccytaaa ataacttcaa accacatgag gagccaataa
3361 aggttagtga tgtratctag agacaccccg caaaatgcaa tagtgtcatc aacaaagagc
3421 aaacgagaaa tttcctcccc ctcacccgct ctttccccca ccttaacacc tracaagaaa
3481 cctcccctct tgtgctctca ccaacaaaca ttaagagcct ccattgcaat cacaaataag
3541 tagggagaaa gggggtcccc ttgcctcaac cccctcgagc ttttgaaaaa aatctgtggg
3601 agtaccatta accaaaacaa ataaacttgt ygtagaaata taccacttaa tccaccctaw
3661 ycattttttc ccaagtccca tttttcccat aaccgctaac aagaaatccc aattagggat
3721 atatttttca aacttgcaac tttaattggg tacctcctag agagatggat gatatgatgg
3781 tgattgcttc tcatgggttt ggaggcaacc ttaggagtag ggtacccaag cacaagacca
3841 aagtcacatt gttttaggtg atatggttgg agaagagtgc taaattgtaa tgagtaggcc
3901 tatattacta cttagtgggc tacctgaagc ttaactttga tagtagttct ctagggaaac
3961 ccacacgatt aggmatctaa gataatcara gagaagtgtt tttggcatgc ttgtaggata
4021 ggatttggca attataggcc taggtgctag cctcgttgga aggcttgacc caaacaagtt
4081 ctgataacta agcaaaaaat atatcaaccc tcctatcaaa aaggtgcacc aacgtacaca
4141 agtcatatac cagggcacca aaaggcaaaa gcaaaaatag agaaaaagca gtaaacccct
4201 ccttcactaa gaaccagacc aattgtctat catagatatt gttgcatcat ttaaacccac
4261 tytgccttac accaaaaagg agtactttag tgcttcattc atkatgttcy acatcttcaa
4321 aagacctgtt agatctttcc ttctaaatag tccaaaatac acaaaagggg acaaccttcc
4381 atgctttctt tttgtccttc ccaagaaagg gtctatgcta acttaagagg gttcattaaa
4441 ttaagatgac atcatccatc ctaacgcaaa caatgagaaa actaacaaca caaaattcct
4501 atcttagtac aatgatgcat gaacgaatat cttcaaggct ttgaagaggc aataawtttc
4561 taatctctaa gagccagaaa attagatgcc tttaaataga gttgacaaaa aactwgaata
4621 gaagcatcga gctcaactct ttctcaaaaa wwwttttgat aggtttccac actgatkaaa
4681 tataacttgt agggcagctc gaktctttct caaatgaacc acaagggatc aaacttatcc
4741 tagaaacaaa aattaaaaaa wcaaaaaaat aaataaaaat aataataagc cttctatatc
4801 ttttcttttg ggtgrcacat ataataactg agaaggcatc aactaaaaac caataaaatt
4861 cttcatcaaa attgtcaagg gtgggaagac aagcataaaa tataagtatg caagataggt
4921 acaaccaatc ctagccattt tgaaagaaca agcatttgag tgggtaaagc caatggacaa
4981 tgtttagtgg caattatgct ttagatttct agatttcaac aatatagcta aaaataaatt
5041 atcaagaaga aagagaaggt aaaaatataa ggaaagayta catctaggca agaaaacaat
5101 gttgttgatt acgaaattaa atactgaggg aaaccagatt attcataata aggacatgag
5161 ggctttttaa tgtaaaaaat aaaataaaat cagaaacaaa catttcattg caatgaaact
5221 agctagtgtg ctaaatagat gaaaaayact tcccccaatc cgctacatag aatccaacca
5281 aaagaacgaa aacctataat actctagcaa gcaaacctaa ctacaactaa gtggaaacta
5341 cttagggagg cataaaatcc cctgcaaaag aaatcaaata tttggctttc tatgctgcta
5401 atagatccta taagatcagc taaacgagga aatctacttt gaagcaatac aaaaaatctg
5461 aagaagccac caaccaaact tccactaacc tctttctttc ttagttgtcc aaggagatag
5521 aacaacaaaa ttctccctct actagaagat agctttggtc aactttagac cttccaagaa
5581 ggctaaaatc ttagccttaa tagctagacc ctctggcata tttagagaat gctttcacca
5641 atgtgccaga atgatctatg agcactccta atacctagtt gtcatgggtt caaaattagt
5701 ttgacacaac ccattggagg taagagtcca tatagggagt tcctcagcct acctacaata
5761 gcttatgctt agagggaaga ggaaaaataa aacaagtcct acactgattc caaagtccat
5821 tcatcataaa agatccctga atttctcttc actaaatagt ccaaatcaat gtgagacaat
5881 taatacacca cagggtctta cagaaagaga gcccccaaaa agaaatgatc aacatttcca
5941 ccacactcct aagtggaact tagtcaatcc aggcaagttt ggacaaccta agccatagag
6001 tcaatgctac taggcacaaa accaaaaaaa aaaaaaaaaa ggatccactg agctgcttcc
6061 cttctcttac gcatgacaca caccattcta ggatattctg tacttcaatc cattaaaata
6121 tttcttttct catctgaaaa ttcaaatttg tccaaaaaaa atgttataat gcaaatatgc
6181 aatgctatca acctaacaat ttttattttt attttttgaa gcaaaattga cagaaatccc
6241 tcatcaaaat gaattcagat tataataacc atgtctcaaa aaccagtact cgaatttaac
6301 tgcaacaata aatagcaaat cataggacca gagaaatttt acctggactg aacatcctcc
6361 ttccctctta ttctcttcat cacacatgat atgccagcat taacccctgt cataacagca
6421 aaattgcgag cttgtaccaa tggacccccc gcaagagcct gcaggcaaag gaagccattg
6481 tcgcgtatga atgaatactc catcagttgg aaattccact gctctgattg attttcttta
6541 ttctagaatg ctaactaaat ttttgaacaa cttcgtgtca tctgattcca gataacccag
6601 aaacctatga acccaattgt gcttcacmat gaagatttrc agttggtcac acgcctaaca
6661 gagaatcamt agacaggaac cctcyatttg gttgccaaga aaaacgatga aaaagagaaa
6721 tagcagggtt tcatttatcc cttctctttt catttagttt cccagcaacc aaaaggagca
6781 gaaggacata aaaatcgaaa accccctttg tccggaaaca aaacctaatc gacgrgccag
6841 aaaaagggtt ccccaacaac gagtaaaaaa aataaattaa tgggaattcc attgaaagaa
6901 atgaaacgcc aaaaaaacct gggcttgctt gaaagaagcc atggcttggg gactaagatt
6961 agcttgagga ggagtgggaa tggcagaagt agcgtcgttg gtgagagtgc ccatgaaagc
7021 accaatggcc gcaccctgag cggcgctggt ggcggtgacg ackgcggctt caacaggcaa
7081 ggactgctta gctaaccacg ccctgaaccc attctccaaa tccttgaacc gcgcctgtag
7141 ctgggcaatt gggttctgag cagccaccat tactccttgt ttcccctcgt ccatttcctc
7201 tcttctcaga cctccctcct tgcctgctgg atggataata gtttttcttc tttttctcac
7261 ccttaaaccc taatatgctc aatttatatt catgaaatag tccaaacctc tatccatgaa
7321 attcaccccc taattcacac agaaaaagga caaacccaca tgtcggaaaa tattaagaaa
7381 aggaaaatac cttcttcttt tttttttata atcatttttc catatttgat ttattattaa
7441 aaaaaaatga aaataaataa ataaatataa ttataaataa ttaaaaattt attttaaaaa
7501 gaaaattaaa ttaaattaat ttgaagaaac atataaaata tttttattaa atttaaattt
7561 atttttttat tttcttccta tttttccctt ttcttttctt tcaaaatttt caataacaat
7621 gaataaatat gaattcttaa aaattaaaaa cacgtccaac atggtgatta gttttttaag
7681 aattttttct taaatttgat ttttttaaga attttaaaat acgctccttt tatctttatt
7741 aatttttttc tataatagta tatatttctt ttgatatcca attccacctt ggttttttaa
7801 aatagttagg tcttcttgga acagtttttt ataataattt tttttatttt aaataaaaat
7861 aaagaaaaca aatttgataa caattttttt aacttgtttt ctaataattg ttttaagaaa
7921 taattataca aataaatata gaataattaa aaataaaaca ttaaatataa aatatattta
7981 aaaatattaa aaacaagtta aaaacatttt aatttttaaa taaatttttt ttttacaaaa
8041 attagagaat aatttttaaa aattgttctc aaaaaccatt tttaaaaacg attattaaac
8101 aaaccttaat ttttccattt tatgcaacaa ttacataaac gagataataa tacaagtatt
8161 ggaaattgac aaaacttgac tttagtytgt aatttatcaa tccaattaaa actgcttctc
8221 ttcttttatt caagatagta ggggttgaga ttgtttttgg gtttaaaaat gttattttgt
8281 tccactaaga aaaagtctaa ttttaacctc ttctattcaa tgaaaaatag tttaaaataa
8341 ataataataa taataaatca aataaaaagt taaaaaaaaa aaaaaacagt ttatttatca
8401 tacactgtct gtcctatgat acatcattcg cccatgacac ctatgataca tcattcaaat
8461 atagccttat ccacaaatat gaaatgattc ttctaataag catattctaa tattgcctta
8521 agaccaagga caaacccatg acacctatga tacatcattc aaatctttct tagttggttt
8581 gtagacttcc aaccttgaat cgaaaataac aaaaatatcc tatgatatcg accatggctc
8641 tctattcaag cccgctgcta atcgagactt aatatatata tggaatggga acattgttag
8701 aggagaaaaa gcgtcggaat agtccaatta gtcaggacaa acattagaaa atatggtaat
8761 atatttgaat cttatcaata atgagacttt aaatttaccc gatatttctt attatcttaa
8821 ggaatgtttt tattattaaa ggtgacgttt gtttttttgg ctttttgtcg aaaacaattt
8881 agttttagaa tttaggttgt ttgtttttct attttttcat aacttattat aaacttttta
8941 ctaaatagaa aaagccaaaa tatctagttt tttttaaata gaaaaaataa tatattaatt
9001 tttttttact ttttaatact taatagaaat aaaatactac aaaaataaac aacctaatat
9061 ttaataccat taagcattaa ggttctattt agaatcaagt aaaaaaacaa acatcaccta
9121 actattttaa ctttttttta aaaacaaaca atatttactt agataattat tttggtctaa
9181 tttggttatt tttcatcata tgacatcttt aacatctgta catgcaataa ccaaataaat
9241 ttcaaagaac atgttccatc aaattaagaa tcctgaatgc acgtaaccca aaaaattaaa
9301 catgcccaat ttttttgtag tcaatgttgt agtatcagaa gtggggtctt cattgtagaa
9361 gagaatgaca tcgttgggtc gcaacccatt cggacaggca tccatctgat gccgaggacc
9421 aatgcctcca acacatttcc ttctccatca tccatctcca ccctctgccc atgcaagaac
9481 caaccagtga gccgtctgca caactaggcc ttgaatgaaa attctcttat ggaaatagcc
9541 ctgcaagcca cttccacaga gcccatcatc accttctcca ataacccata tttctccatc
9601 tcccaccgcc cacccttccc catgacattt acgcatcaat ccaaaagccc ctgtgaaccc
9661 ctgcagcagc atgactcatt tttgacgcca ccaaccagtc aaaacctcca acagcccaaa
9721 tgaatggtct acttgtgtat ggagatataa aattagagag aatattttca actacttatc
9781 actttccaca actaagaaac atatagaaac aatattgctt tttatttgat ggaatagaat
9841 gatatgaatg aaaagttcaa gttcaagttc aagagagata caacttggca aaccctaata
9901 ccaaaagcca atgaagaaac ctgcattctg actgcacctc actcctcact cctcagcacc
9961 cagttctttc atagtcaatg acgtagtacc tagaattggg gccatcttcg tagaaaagaa
10021 tcacatcgtc gcatttcaat ccatgtgcct tcacaaattt gtccaggttc aatgaaaacc
10081 actgtggtgt agcctccagc tcccagaact ctcccttact gtccacaaat ggtaccatca
10141 tcctgccatg ttttccttca tgtttcttcg gtaaaaaaac aagtgaagga accctgagct
10201 ttccggtgag gagatcgccg aaggttagcc tcttactgaa gatgagggta ggagtccggt
10261 ctttgctact gcttctgctt ctgctcattg gtaaccacag acatagactg catatatgta
10321 tgaatgattc ttaattttga ccatttattg gcaaccatgt cgatcaagga aaatcttaag
10381 cctcatttct tgtaagatac caaactaatt acctggatcc gccccccatt ttctccacct
10441 tttttgcctt cgagctgtct tcatccactg ctctcgcaga tgtgaatcaa caataaactt
10501 aggattgtat caaagtattc agcttcatga aatgagattc tatatataaa gatcagatga
10561 tgagagaaaa aaaaggaagg aaagagtcaa ccagaatgga aggttttctc tacagttttc
10621 tcagtctaca ttattcctat gactttccaa gtttcttggg tttcttggcg aacttttttt
10681 ttcctccatg ttttcttgac tttccaagat tctggtctct catgcatgat tcttggcaac
10741 catgcagagg ataaaagaga gagaaatatc aaacgaaatc ttgaacaaga aaaaccctaa
10801 acttggagtc catgcagaca acaaagtcac gtaccttgat ctctttttcc attgaaggct
10861 tcaagtcact tgcaggaaga ttaaacctca catttttctt cattgtttta cctaata
//