LOCUS AM431057 10384 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X131027.30, whole genome shotgun
sequence.
ACCESSION AM431057
VERSION AM431057.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10384)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10384
/organism="Vitis vinifera"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(8974..10105,10171..10235))
/locus_tag="VITISV_001341"
/product="hypothetical protein"
/note="GO:0004672 GO:0004674 GO:0016301 GO:0005524
GO:0000166 GO:0006468"
/note="partially similar to EMBL:AP008214"
/db_xref="GOA:A5ANX6"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR011009"
/db_xref="UniProtKB/TrEMBL:A5ANX6"
/inference="similar to DNA sequence:EMBL:AP008214"
/protein_id="CAN78116.1"
/translation="MASEGDFKIGNGTGNGKGKEVSIEHSKELNGNASSVVDDVSAGS
KQWGKDWWWRQDGSGELCSKDYVMEWIGSQICPSANPDWEEEKKCSPSPSPAKPQNSN
LDSSIRLEESQLGEVGIENANKGFEKRETKGWKTRTKKKHRKMQEWWKEEHLAEISKK
GAKMKKMKKLETRWKKGFRMPHLDLGRRFQLRRRRRKFGDQNENEYDPNMEFSFRRGW
RKKNTPSAGSEMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGYLMEKADIYSLGVLI
LVIVSGRRPLHVLSSPMKLEKANLISWCRQLAQAGNILELVDERLKDGYSKDEASLCI
NLALTCLQKIPELRPDTGEIVKILKGEMDLPPLPFEFSPSPPSKLFSRSRRKHKASAG
SETPAY"
BASE COUNT 3524 a 1553 c 1529 g 3730 t
ORIGIN
1 actttatttt tatttttatt ttcctttgtt cctcctctat tcgactttcc cttgwacttt
61 gtcatgattg aactgtagtt ttaataattt tttttaccta attttttttt tctctttttg
121 tatcaaggct atttttggtt tttataaagt ttgaggaaaa aaacgagtga aagaaaataa
181 aaagaaaaag taggtttaaa gtcaataaat tattcttaga tttgacttta ttatatataa
241 agatgaaata atctaaaaat atataatttt tttataaatg taaattatat tttgctttct
301 ttcatatttt ttcatggtaa aatcaaatat gagaaaataa ttttttttaa gctatatttg
361 gtttataaaa ggtaataagg aaaaaaaaaa tattaaggaa aataaatttt ttagttttat
421 ggaaaataaa aaatcmaata taattaaaat tagttagaat ttttatgtat tttaaaatta
481 tttaatcctt atgcaataga gaaaattaag taaaattgta atatccatca aaaacttttt
541 tcactatcca atgtgagatg tcacaaaaat taattttaaa aaatatataa aaataatttt
601 ttgactttaa atttattttt tattttttat tttcctttca tttttcttct ctattttttc
661 tctctcatat tttgccttaa attttctggg aactaaacat gtcttaacat tttttttcct
721 tactactttc gggaaccaag catagtagaa atcaaaattt gatatcctta cttcatcggt
781 cttagcatat gatagagata cattttcttt tattattttt gtttttcaat actttcttta
841 tggagatatc atcaccatta tcctggacca cttgattgat gggttgatta attttctgtc
901 tatccaaaca tatgttaagg gtcgtttatt ttaatgtcta acttcagaga atgcaaataa
961 ataaaaagga cattaatttt gtgaactttg tgttctaatt aatgagagcc ttaacacata
1021 atgcttctac gttaatcaaa atgggatttt agcacccaaa aatgatctta atcttaacta
1081 tgatcacttt attttttgtt tattgagaca tctattagga cttaaatctt aataaacact
1141 ttaaaaagtg attttttcac aataataata attttttttg aaaaaaaaaa atatattatg
1201 tctaaatctc ttctcaaaat atttaccaaa atggttcatt ccaatcatgt aagcattctc
1261 agtatatata tatatatata tatatatata tttttttttt ttttacaatc atcgatcacg
1321 gttttatcat ttttatattt gttatttagt taaaatcatt tatttattta gtgtataaaa
1381 taattttttt tttatatttc aatggtaatt ttcacttgtt ataatatatt tattttatgg
1441 acatgtgaaa atttccaaca aaataaataa ttattttaat ttgcattaat ccaaaaaatc
1501 cttgattagc ataaaattag tatcctacac ctgtaataaa acatttaaat tttaaattta
1561 aaccttaaat tgtaaaatat atcattctta gtattagttt ttaaattatc atgatttcga
1621 tatgataatg ggttgcccgg gacttgaacc cggaactagt aggatagagt agataatttc
1681 tgtgttgaaa aaaaaaaggt aaaaaatccc tccccaagcc gtgcttgttt ttttgattgc
1741 acacgacttt ccctatgtat acatctaaaa cctagtgcct cccttagacg tgactctaag
1801 aaagttaatt acccagttaa ttcaaccctt attgtatgaa catttcaaag ttgaaatgag
1861 aamatctaca aaacatggcc atatttgtca tatccatcta atgctatcta tgaggtctct
1921 agctatatat gttgtgatgt cagatttaca tgtgtcattg agtggaattg gtgtaggtag
1981 aagtcaatgt aaatgtggag cacaggcaca acatcaaaag tacatgaagt taagtagcat
2041 aaaatgtctt atcaaggaga ggtagaggtg ctgtgtactt tataataggt accatggatg
2101 ttaaagtggt atatttgtac aatggagttc tttggtgaga gaatgtaagg gttggtatag
2161 aagcattagg tagcggtgca tccaatccta atggctcatt tttttgaatc catgacacat
2221 gtattgaatg cttatatact ttttgaatga tagggataaa ggctaattct ctagaagatc
2281 aacttttttg aaagattaga aaaattaaaa tctaacctta aaacttgcag agttaatata
2341 aattctccta tgaaatcatt tgactttggc tcaacttgaa gtctcagggg gaggagggtg
2401 gtgaggggtt aatatagatg cattaagagg gaggagaggt gataccaatg atgttgatgc
2461 tcaagtagag gagggtaaat gataaggaag tctcacatgg ggtaggggat gggaaattga
2521 gggagaatgg atagtgtaga ggttttaggt gagagtgaag ggattagatt cgaagccata
2581 ggtgggtgta gggacaacaa ggtatatgac tcaaacgatg gtctagtagc taatgtagat
2641 gaactaagta catgtcattg actagcttgc tcatcgcctc tccctcaacc tctaatggtg
2701 taccctaatg gcaatggtca atgatcgtgg gctgttacct atttttcttt tccatattaa
2761 catcatcgtg tttctttaca aattcatttt gctcatgcat ttgcaatttg catgtttaty
2821 atgggtgcat ttgaaggctt aaaagtgatt tcaattggcc caagtcttct ttgttctata
2881 atttaatgct ttcattgttt ggtcaaawtt tcaaatgcta tttatatkat gttagcctat
2941 ttcccaagta agcagccaca tccaaaaatg tatgtrcata taaaragatt agaaaggctt
3001 aacattttgt tttagtgatt agtaagatgt gataagaatg ttaaggagtg tmattgaaag
3061 tgaagacaaa ggagaaaaag ataaaaagag gaaagtgaat agcttaaaag gagagaaaga
3121 ttacttacac aaatctccat attgagayaa ccatggataa gtatggtatg accaaaacca
3181 tgtctcttta tataaaacaa gagcacccat aaaagttatg atggcagagg ttctatgaat
3241 cttatttagt ttattttatt tttgtttgaa attaaacaaa atatagttaa aatgattcaa
3301 aagcttatta ctttttaaaa ttctttttac tttaattttt ttttttaccc taaytgttct
3361 ccctcatctt tccaactttc cctcaaactt tttcatcatt gaaacataac tttaaatttt
3421 tttttaccta aattattgtg tttctctctc tactattcat cataattgga tctccttaat
3481 ccttccaaca tactttcttt atcggccata tctccattat catggactac ttgcttcatg
3541 ggttgattaa ttttctatct attcaaacat atgttgaggc cctttttttt ttcttttttt
3601 tttttyccat gaatgtatat aatttcatta acaaataacc tattcagtaa aaaaaataaa
3661 aaaataaaaa agaatttatt acttaatgac ttaagttgac ttttaattaa tcatatttaa
3721 gttgttagct taaaaagctt attatttaat tctcacttta agtattaagg ttgtttgaga
3781 aaattaactt aaaatttatt tttaattatc aattgacata ttcatcatta taaattataa
3841 ttagggcaaa tgaggttgag taataatata ggtcgtggag tacaaaggag atcgtgaaag
3901 taataggata aaaatgtaaa atgaagattt gaacctaaaa ataagttaac ttaaagtagt
3961 ttttttttat tttttatttt tactttgagt tatattatta agtcatttta tcaaatatac
4021 ttaatttatt taatgactta aattaagtta ttaaatcact ttaagttatt aaattggttt
4081 accaaacacc caataatttt gtgaactttg tgctctaatt agtgagatga acacaaaatt
4141 cttccacttt aattgatatg gggtwnwagc acccaaaaat gagaatattc ttgactagca
4201 tatcacttca ttattggtat wggcccttac aaaaaaaaaa aaaaatgaat aattgtttat
4261 gtaattttgt ataattcaaa aattaactca tgatatttga aactaataat agttattttc
4321 ttttcatata ccatgaaaca atttaatttt tttccctaac aaaaatatat caattacctc
4381 tctaataaat tagctcatat ctaatataat atatatttta aaaataaaaa ataaaaaaaa
4441 aattatttaa cttttcacat tatttgttgc atctaataaa catggtggca taattaatgg
4501 gtgcttctta tttaattata twaatatact aagctaatgt tttatgtctt tgaattcaat
4561 ttaaatttaa gttgggytgg atattattga tgcttgaata ytgttagata ttaaggctat
4621 gtttggttyc araaaaatag taagaagaga aaaaaaaatg ctaaataaga cagttttctc
4681 atatttggtt tcactataaa aatacgaaas aaagtcaaat ataattaaaa ttagttaaaa
4741 atttatgaat tttaaaatta tttaattttt atataatgga ggaaaataag ttaaatgagt
4801 ttcaacaacc acatgaaaat aatttattaa ctttaaatct atwtttattt tyctttacat
4861 tttcttactt tctacttttc ctttcaattt tctttctctt gcattttctt tcatattttt
4921 cgagaaccaa acatarccta aattttgtta ttcttcttat tgttaaaatt atgtttgaga
4981 taatgttaat cattgaataa gtaaaactaa aattaattat tgttgtggag ttattgaatc
5041 tcattttaga aattgtattt taaagataat tatgacattt taaaaatatt taattaaata
5101 aaattctatt tcgtgtatca cttttgagga aaagcaaggt tttcttattt cttaaaaata
5161 taaatgaatc acattgggaa gtgtaagatc catatatgct cttttgaaga aggcttaaat
5221 tttatagttt ttagatgcta aaatattttw aaattagaaa ttagatgaat gtaatttttw
5281 aaaaatgatt atcatttttc tttttattct ttatgattag gaagaagata tttgaaaaac
5341 taataatttg aagaaaaaaa ataatttaac atattttcaa atatcctaaa atctcaaaat
5401 ttattacaat tttattttat ataattaaat tcaatattta caaactaaaa ttttttaaaa
5461 ttgtaattta atatattcta gatgtctaaa atactaagta aaaaatgatg atatgtaatt
5521 agttaggaaa ttgataattg ggtagtaatt agagtttcta attatacttg atagctaaaa
5581 aaatagttaa aaaaatattc tcagttaagt ttgattagtt actcatcgat cttaatgtgg
5641 tggatctatg aattatattt aaaatgcttg ttcaattatt aagattaatg aatcaatttt
5701 taaaagttta atctaaggga aaatatcaaa ccttaatttt atcatataga attattggtt
5761 ctaatggtta ttcaawggag tgtgagttat gttttgaagt tccaatggga aaatatttga
5821 ttagaattga caatagttat ttttaagtct aatgcaactt gcttttagac ttaagtttaa
5881 aaatcaaaca atcctttaag gtatatttgg ctcatttgat ttgataggag aaggataaaa
5941 aatgtgatga tatgtgtcat cctatatttg gttaacaatg gtatgggcaa tgcgtcaata
6001 attattgtag aatgtatgat ttttagaaat agtgtgttag ctgctaaaaa caataaattc
6061 ttaaatttag aaattgaagg tgattaaaaa acaataatag atcattataa taaaaagagt
6121 aacatcccta gttctattat gttgttaatg aaaggtattt gaaagataac ataagacatt
6181 tttccttgaa aataaatgtc aatgggcaaa cctcgcggct tcacctatgc cttccacccg
6241 acgttactca ttgaaaggcc tgtgagccct cctcatgcat tgaagtaatt caaaagaaag
6301 caaagaagaa tggagtgagg agggtcatgg ttataatgtt tcactatata tgaagtatat
6361 aaaaatatga agaagaataa gaaacacttg gtgaatgaar ggactcatga ttgaagatgt
6421 ggatataaga attgagaaaa tatgaatgtt tcggaaatcc aataattgta tttgattcta
6481 ttctttataa tattttatat gtcatagtaa atkattmttt tattcgggat ataagtatga
6541 ttggtcaaca acgttaaacc tcatatacct tgtatgactg tttaattttt gtgttcttga
6601 aataacatta tttgtattaa agttatatat atatatatat atatatatat ataaaatagc
6661 aaatcaatat aaagcctact aggattttca tgggaaattt gggggaccca tgaaattgaa
6721 gccaattgag taggcatgat gcgattagag caaagctttg acctccatgt actccactct
6781 acacaaaatg tggccatcct cacttatgag atatggattt gcatcaactg ccataataat
6841 aaattcaatt gggttgtgtc aaaggatgaa gtcatttact atttcatgaa catttcataa
6901 aatcttaata tatttaataa maaattatga aacttcaagt aactaagtgt tgrtcaatga
6961 cttcataatt tatgattatc attctcaatc attattgtga atcaactgtt tattttgcaa
7021 atttaatgat acaaatcata agcattcatt cataaaatta aaaaacattt cttcacaaaa
7081 agtaagattg ccattatggt gtatggttga tgatcgaaac ttttggtggt tgttgggcag
7141 tcaaacaaaa atcaaaggca tgaataaagg aggaaacatg agtcataaat ggagttatga
7201 agagtgaggc agtatataat ttaaaagctt tgccaaccct tttgaatagg gtacttggaa
7261 gtcaaaawaa gtccttaaat gactcatgga kctcttttgt acawgaattt tgttatgtcc
7321 ccatcaaaaa ttcaaacaag agaacttgtt tagggctttg gagggtttgg tttttggcat
7381 tttattccac ccacccaata aatgttgtaa ggcaagtgcc tggttaagac tgcccctcta
7441 tcctacctca cttaaaccat gcctgcatcc cacattacct aaacataggg atgacaatga
7501 aattgagttt ttcgatatcc atttcatcct attcccgtag aacgagattg gaagaaatat
7561 aaggttaaga ataagtttga gattttttat ttatttattt atttatttta atctaggttg
7621 ctaaattcgt gatgtttcat cctattcccg tagaatgaga ttggaagaaa tgtaaggtta
7681 agaataagtt tgagattttt tttttttaat ctgggttgtt aaattcgtga tgtctcaatt
7741 atatatagaa ttaaataaaa aataatttaa tttaattttt tatttttcat cttcaataca
7801 tataaaataa aaattgcctt ttataaaaat aaataataaa atttataata tttataattt
7861 atatttattt ttgatatagt aaaaaatttt acaaaaatat taaatgagat aagatgctgt
7921 rgttatgaga aattctctta tcctctctta tcttctgtct atttttttkg gaggaaaaat
7981 aagaataagt ataaataatc aaataagata agrgtcatgc attccaattg tgcctcgtta
8041 ccatatgaca ttcaacaaag attctatact aattaagatt atttttaaaa agtaaaataa
8101 aatatgaatt aaaaataaag ttttgttaaa gatggagtat aaggtgatgg aaagtgttag
8161 ccttatcatt gatatgaatt ttcactgcca aacaacctga gagttcccta aaatcatcta
8221 tctgagaaaa aaaaaaaaaa aatctactga gtgtttccta aaatcattct tcctcttcaa
8281 ctttcttcca ccaatgattc aatgaatcaa aagttcaaaa cataacatcc ccgacacctt
8341 aaagccctca ttatgattgt tttttttttt tttgtcataa tgtaataccc acattggatg
8401 ggaaataaaa tttttgacca tgacatctct tcttagtcaa gtaagcgtgt tttcaagccg
8461 tgaaaacctt tttgagtcca gaactaataa tatatactta attaagtgca aatcgttata
8521 aatggtatca aaatcgaacc ttgatctcgg tgtgacacta tgtttacatt ttaaaaccrt
8581 gagactcctt tgaccaagag traacaatat ttacacactt aaktrcgagt agttacaaat
8641 cacttccacc aaaataaagt taaagttcaa aaaccaataa cagagactat tggtggtgat
8701 atttacagac taataaaagt agtaaaccac tccatctatg gagatacagg tgcttaatgg
8761 aaatagaaaa gaggcagaat gtagaatcct cccacttggg catggtttct aatcatcctc
8821 tcccaaattc aactgcaaat cctgttctca agattatgaa aataaaaacr ccatccatct
8881 agatttacaa aacaacgaca caatcctcac agtgaaaagt gttttttctt tccactttgc
8941 agaacctgaa ttgacaaatt atgaaaagca agatcaatag gctggagttt cagagcctgc
9001 actggccttg tgtttcctcc tggacctgct gaacaatttg gaaggtggag agggagagaa
9061 ctcaaaaggg agtgggggga gatccatctc ccctttcaga atcttaacaa tctccccagt
9121 gtcaggcctc aactctggta ttttctgcag acaagtgagc gccaagttga tacacaagct
9181 cgcttcgtcc ttactgtacc cgtctttcaa tctctcgtcc acgagttcta aaatgtttcc
9241 ggcttgagct aattgcctac accaacttat caagtttgct ttctccagct tcatrgggga
9301 ggagagaacg tgtagtggcc ttctaccgga cacaatgaca aggatcaaaa cccctaagct
9361 gtaaatgtcg gccttttcca tcaagtatcc gcacccacca tactctgggg cgacataaca
9421 caaggtcccc ctcatgctgg ttgtgctrct cagctcacgg ctgaagaggt ctccgctcca
9481 catctcgcta ccagcagaag gsgtgttctt cttcctccag ccccttctga aactgaactc
9541 catatttggg tcatactcgt tctcattctg atccccaaat ttccttctcc tcctcctcag
9601 ctgaaacctt cttcccagat caagatgtgg cattctgaag cccttcttcc acctggtctc
9661 cagcttcttc atcttcttca tcttagcacc cttcttgcta atctctgcaa ggtgctcctc
9721 cttccaccat tcctgcatct tcctgtgctt cttcttggtt cgggttttcc agcccttggt
9781 ttctctcttc tcgaacccct tgttagcatt ttcaatccca acttctccta actgggattc
9841 ctccagccta atggaactat ccaaattgga gttttggggt ttcgcggggg agggggaggg
9901 ggagcactty ttctcctcct cccaatccgg gtttgcagaa gggcaaatct gactcccaat
9961 ccactccata acataatctt tactgcacaa ttcaccactc ccatcctgcc tccaccacca
10021 atctttcccc cattgtttag acccggcaga aacatcatca acaactgaag aagcattacc
10081 attcaactcc ttactatgct caatgctgca aggctcatca tcataggcga caaacttgtt
10141 ccatcttcgc ccccacccat gtccacacac gacacctcct ttcctttccc attcccagtc
10201 ccattcccaa tcttgaaatc accctcactc gccatattag cattgtaatt gagtgaattc
10261 aagctcaaac tcttcacatt gtaacaactc ctactatttt tggaagaaga cgaagcttgc
10321 aaggcaagag caaagtctac ctcatgcgcg ctatccgccg gtgtttctgc cccaccccgg
10381 ctaa
//