LOCUS AM429467 8892 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X239924.21, whole genome shotgun
sequence.
ACCESSION AM429467
VERSION AM429467.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 8892)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..8892
/organism="Vitis vinifera"
/chromosome="10"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(1804..2334,2411..2509,2560..3288,3533..4139,
4266..4663,4910..5785)
/locus_tag="VITISV_007430"
/product="hypothetical protein"
/note="GO:0003677 GO:0003676 GO:0016787"
/note="weakly similar to EMBL:AP008210"
/db_xref="GOA:A5ALB5"
/db_xref="InterPro:IPR013103"
/db_xref="InterPro:IPR025724"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5ALB5"
/inference="similar to DNA sequence:EMBL:AP008210"
/experiment="confirmed by EST"
/protein_id="CAN64673.1"
/translation="MITSEKLVGSENYLSWSASVELWFMGQGYEDHLVTQEADIPEVD
RVQWRKIDAQLCSVLWQSVDPKILLHLQAYKTCFKFWTQAKGLYTNDIQRLYKVASAI
VHISQQDLDLSTYIGQIASLKEEFLTVMPLTPDVGAQQTHLDKFFMVLTLIGLRPDLE
PVRDQILGSSSVPSLDDFLKLALEEAAVVPEVEVNVLIAPIAINLATLAISSDSPLPQ
PSSSFASQASVASVAQPGNASACLTHTSSLGPWILDSGASDHLSGNKDLFSSITTTSA
LPNVTLANGSQTVAKGIGLTLPLPSLPLSSVLYTPECPFNLISISKITRTLNCSITFS
DKFVTLQDRRTGKTIGIGRESQGLYHLTSDSSPAVCIFTDAPLLIHNRLGHPSLSKFQ
KMVPRFSTLSSLPCESCQLGKHTRVSFPKRLNNRAKSHFELVHTDVWGPCRTASTLGF
QYFLNARIDILLRQLVLSSSIVMFLFVFGGTLLTACYLINRMPSSVLHDQIPHSLLFP
DQPLYFLPPRVFGCTCFVHILTPGQDKLSAKAMKCLFVGYSRLQKGYRCYSLETHRYF
ISADVTFFEDSPFFSTTSESLPVSEVLPIPIVSSPDAMPPRPFQVYHPRPRVVAPLPF
AEAPADSLPIPSASPAPALPSPNDLPIAVRKVLSHPGWRQAMVDEMAALHSNGTWDLV
VLPSGKSTVGCHWVYVVKVGPDGQVDRLKARLVAKGYTQVYGSDYGDTFSPVAKIAFV
RLLLSMAAMCFWPLYQVDIKNVFLHGDLAEEVYMEQPPGFVAQGEFGLTKDLGKLKYF
LGIEIAQSSSGVVLSQRKYALDILEETGMLDCKPVDTPMDPNVKLVPGQGEPLGDPGR
YRRLVGKLNYLTITRPDISFPVSVVSQFLQSPCDSHWDAVIRILRYIKSTPGQGVLYK
NRGHTQVVGYTDADWAGSPTDRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYLA
MALATCELIWLRHLLRELRFGKDEQMKLICDNQTXLHIASNPVFHERTKHIEVDCHFI
REKIASGCVATSFVNSNDQLADIFTKSLRGPRIKYICNKLGAYDVYAPA"
BASE COUNT 2187 a 1877 c 2112 g 2686 t
ORIGIN
1 ctcaattgta agtaaacaga tgaatgagaa ttaagatttt tcttcttttt ctctctctca
61 acatggtatc agagccaagg gagaaaacct aattctttcc tgtttcccgt gtcatcaact
121 ccgggaaacc tttcggtgac cgtgtttcat tccagttacc ttctccatct cccaatactt
181 tccggttaat cggatcgtcg tcagaaaaca ctcaccgccg gcaaactttt ccgacaaact
241 tttccggcga actttccggc gacgtctttt tccgacaccg accataccag aaggagcgcc
301 tggaggagat ctccaacttt tgtgaagaca ccggaaccaa aagaccatcc atgcaccggc
361 cacgcgcaat tttccggccg gcgactgcat ctcactttca gaccaaagac ttggggaaac
421 tcaagtattt cttgggaatt gagatagctc aatccagttc tggtgtggtc ctttcccaaa
481 ggaagtatgc tttagacatc ctggaagaaa ccggtatgtt agaytgtaaa ccggtagaca
541 cacctatgga tccraatgtc aaacttgtac caggacaggg ggagccttta ggagaccccg
601 rgagatatcg acgrctcgta ggtaaattga actatctcac cattactcrt ycagacattt
661 cttttcctgt gagtgttgtt agtcaattcy tayagtcacc atgtgatagc cattgggatg
721 ccgtaatccg cattcttcga tatatcaaaa gtacaccagg ccaaggtgtg ttgtacaaga
781 acagaggtca tactcaggtt gttggttaca cagatgcaga ttgggctggc tcacccacag
841 atagacgttc cacttcaggg tactgtgttt ttattggagg taatctaata tcttggaaga
901 gtaagaaaca agatgtagtg gccagatcta gcgctgaagc cgagtatcta gctatggctt
961 tggcaacatg tgaactcata tggttgagac atcttcttcg agagttgaga tttggaaagg
1021 atgaacagat gaaactcatc tgtgataacc agaccacatt acatattgca tccaatccag
1081 tctttcatga aaggaccaag catattgaag ttgattgtca tttcattaga gagaagatcg
1141 catcaggatg tgttgctaca agttttgtta attcaaatga tcaactagca gacatcttca
1201 ctaaatctct cagaggtcct aggattaaat atatttgtaa caagcttggt gcatatgacg
1261 tatatgctcc agcttgaggg ggagtgttga atatgatgta tttatagtat ataatctttc
1321 cttgttaata taggtcacat gtatggtact taggactctt agccttgtat atatatattg
1381 ctcaattgta agtagataac atatgaatga gaattaaggt ttttcttctt tctctctctc
1441 tcaacactcc tccagcctcg cctgacgccg accagcatcc ctacctccct ggttctccca
1501 tccgagccct gcatgtactc ttttggggat ttttgtctct gtcagccctc caatcagtct
1561 ttccggcgaa ggtctggcta ctttttctcc accccaatcc ctgcacgtgc cttgggaagt
1621 gttcttctac ctttctggtg ttaccacgcc gcgatctgag gtcgtctccc tttttcggtg
1681 gtgccacgcc gcaatctgaa gccgtattag ggctctcttc gatccaaaca tacttcattc
1741 tccagataag tggatatgac tactaaaact tccatttttt cctctgtcat atctggatct
1801 cctatgatta cttcggagaa attggttggc agtgaaaatt atctttcctg gtctgcctct
1861 gttgaacttt ggtttatggg tcaaggatat gaggatcact tggttaccca agaggcagat
1921 atccctgagg ttgaccgcgt acagtggagg aagatagatg cacagttatg tagtgtatta
1981 tggcaatcgg ttgatcccaa gattcttctt catcttcagg cctacaaaac ttgttttaaa
2041 ttttggactc aggccaaagg attatacacg aatgatatcc agcgtcttta taaggtggct
2101 tctgctatcg tccatatcag ccaacaggac ttggatctat ctacttatat tggtcagatt
2161 gcctctctta aggaggagtt cttgactgtg atgcctctta ctcctgatgt tggggctcaa
2221 caaacacacc ttgacaagtt cttcatggtt cttactctta ttggcctccg tccggatctt
2281 gagcctgtcc gcgatcagat tcttggtagt tcatcagttc cgtccttgga tgatgtgttt
2341 gctcgcctcc tccgtatctc ctccactcag actttgccat ttgatagcac ttcagattct
2401 tctgtgttag tttctcaaac tagctctcga ggaggccgca gtggtacccg aggtagaggt
2461 caacgtcctc attgcaccta ttgcaataaa cttggccaca ctcgcgattg ttgctatcag
2521 ttacatggac ggcctcctcg cactgcccat gtggcctagt cctctgattc tccgctgcct
2581 cagccttcga gctctttcgc atctcaggct tctgttgcct ctgttgccca gcctggtaat
2641 gcctctgcct gccttaccca cacatcttct cttggaccct ggattctaga ttctggagct
2701 tctgatcacc tatctggtaa taaggatctt ttctcctcta ttactactac ctctgcttta
2761 cctaatgtta ccttagctaa tggttctcaa actgtggcta aaggtattgg tttgaccctt
2821 cctcttcctt ctctacctct cagttctgtc ctttatactc ctgaatgtcc ttttaatctt
2881 atttccatca gcaaaatcac tcgtactctt aattgctcta ttaccttttc tgataaattt
2941 gtgaccttgc aggaccggag aacggggaag acgattggca taggacgtga gtctcaaggc
3001 ctctatcacc tcacctcgga ttcatctcct gcagtttgca ttttcactga tgctcctctc
3061 ctcattcaca atcgtctggg ccaccctagt ctctccaagt tccagaagat ggtccctcgt
3121 ttttccactt tgtcgtcgct tccgtgtgag tcatgtcagc ttgggaaaca tactcgtgtc
3181 tcgttcccaa agcgtttgaa taatcgggca aagtctcatt ttgagcttgt ccacactgat
3241 gtttggggtc cttgtcggac tgcgtctact ttaggatttc aatattttgt cactttcatt
3301 gatgactatt ctcgatgtac ttggttattt ttaatgaaaa atcgagctga gttattctct
3361 attttcctaa aattttatgc tgaaatccaa acccaattca atatttctat tcgtgtgtta
3421 cgcagtgaca atgccaggga atatttttca gccccattta cttcgtttat gtctcatcat
3481 gggattcttc atcagtcttc ttgtgctcat actcctcaac aaaatggggt agctgaacgc
3541 aagaatcgac atcttattga gacagctcgt actatcctcc tccatagtaa tgttcctttt
3601 cgtttttggg gggacgcttc ttaccgcttg ttatttgatt aatcgtatgc cctcctctgt
3661 cttacacgat cagattcctc actctcttct cttccctgac caaccacttt atttccttcc
3721 tcctcgtgtc tttggttgta cttgttttgt tcatattctc actcctggac aggacaagct
3781 ttccgccaaa gccatgaagt gcctcttcgt gggatattct agacttcaaa agggttatcg
3841 ttgttattcc cttgagactc atcgatactt tatctccgct gatgtcacct tctttgagga
3901 ctcaccgttc ttttccacca cttctgagtc tcttcctgtt tctgaagtct tacccattcc
3961 cattgtctcc tcacctgatg ctatgcctcc tcgaccattt caggtttatc atcctcgtcc
4021 tcgtgtcgtt gctcctctcc cttttgctga ggcacctgct gactcacttc ctatcccttc
4081 ggcttcacct gccccggctc tgccttctcc taatgactta cccattgctg ttcggaaagg
4141 tactcgctct actcgtaatc ctcatcctat ttacaatttt ttgagttatc atcgattatc
4201 ttcaccctat tctgcttttg tttctgctat atcctctgtt tctcttccaa agagcaccca
4261 tgaagttctt tcccatccag gctggcgaca ggcaatggtg gatgaaatgg ctgctctgca
4321 ctctaatggc acttgggatc ttgttgtttt accttctggt aaatctaccg ttggttgtca
4381 ttgggtctac gtagttaagg ttggtcctga tggtcaggtt gatcgcctta aggcccgctt
4441 agttgctaaa ggctatactc aggtttatgg ttctgattat ggtgacacat tctcccctgt
4501 tgccaagatt gcttttgtcc gtctgcttct ctccatggct gctatgtgtt tttggcctct
4561 ttatcaggtg gatattaaaa atgtcttcct tcatggtgat cttgccgagg aagtttatat
4621 ggagcaacct cctggttttg ttgctcaggg ggagtttggt ttagtgtgca ggttacgccg
4681 ttctctatat ggcttaaaac aatctccttg agcatggttt ggccgtttta gttctgttgt
4741 tcaagagttt ggcatgcttc gcagtacatc agaccattca gttttctatc atcctaactc
4801 cttggggcag tgtatttatc tggttgttta tgtggacgac atcgtcatta caggcagtga
4861 tcaggatggt atttagaaac taaagcaaca tctttttacc cactttcaga ccaaagactt
4921 ggggaaactc aagtatttct tgggaattga gatagctcaa tccagttctg gtgtggtcct
4981 ttcccaaagg aagtatgctt tagacatcct ggaagaaacc ggtatgttag attgtaaacc
5041 ggtagacaca cctatggatc cgaatgtcaa acttgtacca ggacaggggg agcctttagg
5101 agaccccggg agatatcgac gactcgtagg taaattgaac tatctcacca ttactcgtcc
5161 agacatttct tttcctgtga gtgttgttag tcaattctta cagtcaccat gtgatagcca
5221 ttgggatgcc gtaatccgca ttcttcgata tatcaaaagt acaccaggcc aaggtgtgtt
5281 gtacaagaac agaggtcata ctcaggttgt tggttacaca gatgcagatt gggctggctc
5341 acccacagat agacgttcca cttcagggta ctgtgttttt attggaggta atctaatatc
5401 ttggaagagt aagaaacaag atgtagtggc yagatctagc gctgaagccg agtatctagc
5461 tatggctttg gcaacatgtg aactcatatg gttgagacat cttcttcgag agttgagatt
5521 tggaaaggat gaacagatga aactcatctg tgataaccag accrcattac atattgcatc
5581 caatccagtc tttcatgaaa ggaccaagca tattgaagtt gaytgtcatt tcattagaga
5641 gaagatcgca tcaggatgtg ttgctacaag ttttgttaat tcaaatgatc aactagcaga
5701 catcttcact aaatctctca gaggtcctag gattaaatat atttgtaaca agcttggtgc
5761 atatgacgta tatgctccag cttgaggggg agtgttgaat atgatgtatt tatagtatat
5821 aatctttcct tgttaatata ggtcacatgt atggtastta ggactcttag ccttgtatat
5881 atatattgct caattgtaag tagawaacag atgaatgaga attaaggttt ttcttctttt
5941 tctctctctc aacaggattg atctttggtg cgattgtaca gtgctgtccc aaaggtttcc
6001 tcacctttat ggcatggctg ctcatacaaa cggcacggta gaagaaatgt gggatcagaa
6061 tgtcggccaa ggaggttggg atttaaggtt tgtgaggaat ttcaatgatt gggagttgga
6121 tatggtaggt aatttgattc atgtcttgag gggctataaa cctacctcag aagaagatgc
6181 agtctattgg aaagggggaa gaatggacag tttaaagtca aggaagctta caacttggtg
6241 gttaataccg tggctaacaa cttttcgaaa agtaacattt gggtggataa agttccaact
6301 aaaattttgt tttttgcttg ggaggccact tgggggaagg tgcttacgtt agataggctc
6361 cagaaaagag gttggcaact cccgaattgt tgttttttat gtggctgcga agaggaatcc
6421 gtaaatcaca ttctcataca ttgtatagtg gcaaaagttc tgtgggatat gatctttgct
6481 ttgtttggtg ttcagtgggt ctttccagaa actgtaaagg aggtcttatt gagctggagg
6541 gacccttttg taggggaaaa aaggaaaaag atatggaagt ctatctcgtt gtacatcttt
6601 tggactcttt ggaaggaaag aaatagacta gcttttargg ggggagtgat agcaattcag
6661 aaattaaaaa attcttttgt ctgtaattta tggtgttggg cgagattgta tagtggagag
6721 agttcgttgt ctcttatagg cttcttggag tggataacct ccagataagg gctggtgggg
6781 ttttttttgc tttccttttg gttgtgaggc tttagctagt ttgtatactc actgtatact
6841 ttgtggcttt ttggcatctt ttcaatatat tcagcgctta tctataaaaa aaaataaaaa
6901 tggtcatgat ttacaaaggg aaactaccca aaatcaggaa cttaaaacga ggataggtaa
6961 aatgcaaata tgagtatata tataatcaga attataataa acgcctcaag accatcttta
7021 gccttttaaa acattgaagt aaagaatggg aaacctcatg gaggagagag aaagacctag
7081 agagagagtg tgtgagagag atggagaaga gagctggttc caaggtgcgt acrgggactc
7141 agcgggttat ctccagtcag ggggtcggaa aaggagtttt ggggtagagt craagacctt
7201 tgaggtcgag acaragaaga agaagggyag gacgcaaatc ttcatagtgg aaagaaaggg
7261 aggtgtctct tcttggatta agttggggcc ggcaagttta gggccgctca tkgaaggcct
7321 ggtcttttgt accaaggaca cgaggactgg ccattgggag aaactctagc aagagaatgg
7381 gagatacttc tctttagtgc gcggcgaaaa caaaggggga tgcttcctac gcctgggtgt
7441 tatagatcgg gaaaagaaaa ggtttagtat ctttgtaccy agaggcagag gagcaaaagg
7501 gggttgggcc ctcatggtgg aggygctgcg agagatagag tctattttag ataggcaagt
7561 gagacagaag gacaaggaca agttttggaa gcccatgytg ggaaaatcct ttgcggaggt
7621 ggttaagcag aatcgyagca tcggagaaga ggtggctagg gtgaaagtgg ataacagggc
7681 tttaagtgtg aacttggaga agctggccca ttgccttgtc ggttgttggg acccaatgct
7741 aggagggggg gaagatttga gaagctgggg gacccaaatg gcaaaattgt gggggctaaa
7801 gggcaattta ggcctggcya aactrgaaga cggmaaggca ttactggaat ttgagatgag
7861 twacagaagc tgagaaagcc ctagatgatg gggaaatatc ggtcggtggy ctcgtcatgc
7921 ractggagaa atggagccaa aggacgggat gcttgatgga ggaagagaga gaaagagagg
7981 cctgggtaag gatagttggc cttcccattt ctttatggga ccgggacatc ctgagcaaga
8041 taggagaggg gtgcgggggt tttttggaca tagatgttaa aacggagagg atggaagagt
8101 tgcagtgggc tagaattcgg gtaagggtaa aagatggaaa tccctaatat ggtggatatt
8161 tgggtcgaga atatgtgtta ttccctaacc ttgtgggaga tcagaccgac gttgcgagcg
8221 ctgccgatcg acgagaaggg aaaacccttc gtaacagaag gagaggtaga gggtgagttt
8281 cagccacgcg agggcaagcg cgtgagggag gccgaagggg gcccaaggct tgaggagcag
8341 acgcagtctg cggatgggac gcgaaggctg acttctgggt tggggcgacc catggattgc
8401 tatcatgggc ttggtgggtc gcatttaagg ccccagggag cggggataat gcagagcggg
8461 actttagaga taggcttctc ggtgaagcct cgtgggcctg tgggtattaa cccatcctcc
8521 tcctctgtgg gctcttttgg gccaaaggac atggtggacc tcagatggac caaggcctgg
8581 aaccctcggt ggatgctgga cgggtagccg aaggtcaaag ccccttgagg gagcccaacg
8641 accaatttgt tgaggcccar agttgtggcc ccaagccact cgggaagccc actctctgaa
8701 atttctctgt tttgggagaa ggatggactg cgaaggctga gcgaggcaga gttcctccac
8761 ataaagcgaa cgaagactga tctcgccctt gtagaggaag cgtcgaggta cgataatgtt
8821 ccatttcagt ccggttgctt gatctctgag cctctttctt tcccttctcc ttttttcggt
8881 cggactccag tg
//