LOCUS AM425731 10060 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X239406.8, whole genome shotgun sequence.
ACCESSION AM425731
VERSION AM425731.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10060)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..10060
/organism="Vitis vinifera"
/chromosome="16"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(1930..2287,2835..3007,3116..3213,3295..3429,
3525..3714,3799..3913,4005..4051,4122..5039)
/locus_tag="VITISV_016271"
/product="hypothetical protein"
/note="highly similar to EMBL:AP008210"
/db_xref="GOA:A5AFX2"
/db_xref="InterPro:IPR004813"
/db_xref="UniProtKB/TrEMBL:A5AFX2"
/inference="similar to DNA sequence:EMBL:AP008210"
/protein_id="CAN77891.1"
/translation="MVRVNGEESKEIDGVELEQPQVAQEEMRRIPPWTKQITIRGIIA
SVVIGIIYSVIVTKLNLTTGLVPNLNVSAALLAFVFIGTWTKLLQKAGFVSTPFTRQE
NTVIQTCAVACYSIAVGGGFGSYLLALNRRTYEQAGVDTEGNTPGSHKEPGVGWMTGF
LFATCFVGLLALVPLRKIMIIDYKLTYPSGTATAVLINGFHTPHGDKIAKKQVHGFAK
CFSFSFFWAFFQWFYSGGDKCGFVQFPTFGLQAWXQTFYFDFSMTYIGAGMICSYLVN
LSLLFGAVLSWGLMWPLMRHKKGNWYPATLSQSSMKGLNGYKVFISIALILGDGLYNF
VKILLFTGTSIIKRLNNRGSNAILTEGLKQRGATYVFLNKNQTMGDLQRNEVFIREGI
PIWLACTGYVTFSIISIIVIPLMFPELKWYYVVVAYTLAPSLGFCNAYGAGLTDMNMA
YNYGKVALFVLAALAGKDSGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSM
LLSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIIYRNMAILGVEGFSALP
HHCLQLCCGFFIFAIAANLVRDLSPSKIGKWIPLPMAMAVPFLVGAYFAIDMCMGSLV
VFVWHKXNSKKASLMVPAVASGLICGDGLWILPSSVLALAKINPPICMSFLAT"
CDS complement(8082..8702)
/locus_tag="VITISV_016272"
/product="hypothetical protein"
/db_xref="InterPro:IPR007608"
/db_xref="UniProtKB/TrEMBL:A5AFX3"
/protein_id="CAN77892.1"
/translation="MNFHSSSPTNRFLRQLKQPNSDSNPLELDESDVVWSPDSAGPNS
PSPSPSTDSSPPSSLXLKFQPARLGLSSVLSDDRPTLLRRQSGLDPSFSATSAARTIP
PVPIPRSGSSSGDSTGSGSGKFLMSAPVNVPAWPSNGVRRRRSDLDDSDDLEDDTKAE
MLPPHEIVARSHVMTFSVVEGVGRTLKGRDLRRVRNAVFQKTGFID"
BASE COUNT 3208 a 1551 c 1826 g 3347 t
ORIGIN
1 aaaaattttg ttagctgaca tcaacaataa aataaaaaat ttaatttttt taaatataat
61 taaaactaaa ataattaata attaaataca atttaaaatt aaaaataaaa taaaatatta
121 actcttatta tattttcaag tctttctyca tatctatatt ttctactagt gygtttttag
181 tgaaatgaaa attcatattt tatttttata tttttagctt taatttttat ttttaattat
241 attttaaatt tttaaaattt tttattttat tgatttgaaa tcaactctta ttataaaaaa
301 aaatgttaat agatattatt gacttrgcaa gtaaaaatgt catttaagga aataattatt
361 taatttataa aaaagtgtat gcattttaaa atatttttaa wtgaataaaa acaaatctaa
421 tttataaaat ttagagtttt tttgttaatt tttttaaaat tagtcggtaa aaccatatat
481 atatatatat atatatatat atattaatta aggtggatat ggaatcacaa attttccttt
541 atttatatta atatttttaw ttatatatat atatatttta tttattattt ataattattg
601 atagtgattt gtaaatttac tttgagttgg tcaaaagwat gcataacaat atcagaaaaa
661 agggcgttag aagttatgac gacacaacaa ttttccgatc ctagaaaaat acaaaagcst
721 cagaggctcg gaaatccacg tgcctcgaac gcacgtgact ccacgcgcta atcagacagg
781 tgaattrtgg acccatatct gacaggcaca ggtggcgtga cgtgattggc tgactgtcya
841 ttttgtcaac ttgcagagag kcgcagcgtc tacatatcac tgtcactatc tgtgtcactt
901 tgttttgatt tgatttmatk ttttgccctt tccgatatgc catgttccga amacaaggca
961 gtgaaagtga tggcactttg aagggagggc tgagcccaat ccatcatcat ctctgytctt
1021 gaaggccact aacatcatcc acaatggaga tggaaagtag aggagaggga gagtcaacga
1081 gcagttattg atatggaaag tggaaaggaa aaaaaaagcg taatagtttg attaagagat
1141 taaagtgtag tacaaacgcc aaatttgtac ttcagagcag tacaatggaa gtggaggctt
1201 aagctttaag attttgaagg attttacagt tttagtcggt ggggttttct tgcttcttaa
1261 attggttttt tcgtggggaa tgtgaagagt gtggatagat agagagagag aaagagagtg
1321 acccatttgg atgtttctga tgctgaggtc gggtgaattt tgagaaccca atcggtggtt
1381 tgtgggtttg attgtggttt atgggtgaat tggtggagac tcatctggct gatttgaggg
1441 atccgagtgg agggattgaa ggtgattagt ccatatttgg gggtgtttct gggtctgtag
1501 agagtcgttg aggtgttgaa tgaggtttca gaagatcaat ctcgaggttc gggaagtttt
1561 tttttttttt ttttttgagt ttttcccaat ctcaatctag agagaagaag aacgacagaa
1621 aggagtaagg taagatcgcc cttttctctg tctgtttcct ctgtttcatt tactctcctc
1681 cgtttggctg ccgggaaaac tgaaccggaa gggaaaatca atttggtttc cagaaaacga
1741 aaaagctctc ccaaagagat tttggttttc tggatcccaa acaacgaaaa aaaaaaaaaa
1801 agatctaagt ttccctgtct tttttttctc gacaaccgaa catgcctttt ctcattgaat
1861 tagaatttca atctggatcc ttttcatgct tgaattgaca ccagaaaaga agattccgat
1921 cgtaaaaaaa tggtgagagt gaacggggaa gaatcgaagg agatcgacgg agtggaactg
1981 gaacagcctc aagttgcgca agaggagatg aggagaattc ctccatggac gaagcagatc
2041 accatacggg gaatcatcgc cagcgtagtt attggaataa tctacagcgt gatagtgacg
2101 aagctcaatc tcacaactgg gctcgtccca aatctcaatg tttcagcagc tctgctcgcc
2161 ttcgtcttca ttgggacatg gacaaagttg cttcagaaag caggattcgt ctccactcct
2221 tttactcgac aggagaatac cgtcattcag acttgtgcag tcgcctgtta cagcattgct
2281 gtcggaggtc agagacttag ggccaaaaaa aacacttccg aaaaccagat tttgaacact
2341 caactgtttt gtttaataaa tgtataagag tgtttttaaa aataattttt atatttaaga
2401 tttttaattg aaataactaa agttactatc tgaaaacact tattttcatt tttaagaata
2461 gaaaataaaa aataaaattt ttatttattt atttattttc aaaactattc ttgaaaatag
2521 ttgtgaaaca ggatttttaa gtttcgaagt gtttttcaaa aacaatttga aaaactgcta
2581 taccatgttt tgaacaataa aagtctgttt gaaattagtt tttatgtttt aaaacaattt
2641 ttagaaaaca catgaaaaga actaaaagat attatttctt atcaccaaat gggtgttcct
2701 gttttctggc ttttttttac ttcggagaat tagaaactgt tttgattttg tgaatttgca
2761 gtagaaaatc gatcttctct tcttgcttgt tgtatgttat atgcttattg gagctattga
2821 ttatggtact gcaggcggtt tcgggtctta tctgttggcg ttgaacagga ggacatatga
2881 gcaagcaggt gttgatacag aagggaatac tccagggagc cataaggaac ccggggttgg
2941 ctggatgact ggcttccttt ttgccacctg cttcgtcggg ctgctggcct tggtgcctct
3001 gagaaaggtg attttttcgg tttttctagt gatttggatg tagaatagct atagtgttgg
3061 tattttcttg gtgagaaatc aaattggttt gttcacgttt ttcgttctta tgcagatcat
3121 gataatagac tataaactaa cttatccaag tggaactgca acggcagttc tcatcaatgg
3181 attccacact cctcatggag acaagattgc caagtatgcg tccctttatt cttatctttc
3241 ttgattaaaa ccgagataga atttgatgta aacaagtcct gatccttctt gcaggaagca
3301 ggttcatggg ttcgcaaagt gtttctcctt cagtttcttc tgggctttct tccaatggtt
3361 ctattctggt ggagacaaat gyggattcgt tcaattcccg acgtttggac tgcargcttg
3421 gartcaaacg tatgtacccc tcatccttcc tttcatttcc tttccattgg gtacctgttc
3481 tttatgcttc aatcctyatt gattcaagca attgggttct acagatttta cttcgatttc
3541 agtatgactt acattggagc aggaatgatc tgctcctatc ttgtgaactt gtctttactc
3601 tttggcgctg tgctctcttg gggattaatg tggccattga tgcgccataa gaaaggaaat
3661 tggtatcctg caactctatc acaaagtagt atgaagggct taaatggcta caaggtttgt
3721 gtgtgaatac caaaaatgag tttccattaa cttgagccaa aaacctctgt gatttaccaa
3781 tatgctcctg ccctgcaggt ttttatttcg atcgccctca tcctaggaga cgggctctac
3841 aattttgtya agatactgct tttcacgggc acaagcatca ttaaaagatt gaataacagg
3901 ggctcaaatg caagtaagtg atcacccctt tattataatc tatatgtcct caaagaaggg
3961 ctaaaatgca agcagatgag caaccctttt ctataattta tcagtcctca cagaagggct
4021 aaagcagaga ggggcgacat atgttttcct ggtttgattg aatcctttcg agtatagagc
4081 ttttctaaca tgaggttttt tccattgcag tttctgatga gaataagaay cagaccatgg
4141 gtgatcttca aagaaatgaa gtgttcataa gagagggtat tcccatatgg ttggcatgta
4201 caggatacgt caccttctcc atcatctcca tcattgtgat ccccctcatg ttccccgagc
4261 tgaaatggta ctatgtggtt gttgcctaca ctcttgctcc ctctcttggc ttctgcaatg
4321 cttatggtgc aggcctaacc gacatgaaca tggcatataa ttatggaaaa gtagccctgt
4381 ttgttcttgc tgccttggca gggaaggatt caggcgtcgt tgcagggcta gttggctgtg
4441 gcctgattaa gtccattgtt tccatatctt ctgatttgat gcatgatttc aagactggcc
4501 atctcactct cacttcccct cgatcaatgc tccttagcca ggccattggg acggcaatag
4561 gctgtgtggt ggctcctctc acattcttcc tcttctacaa ggcctttgat gtggggaacc
4621 cagatggaga atacaaagcc ccttatgcta tcatttacag gaacatggca attctaggag
4681 ttgaaggctt ctcagccctt ccccaccact gcctccagct ctgttgcggc tttttcatct
4741 ttgccatagc agccaacttg gtgagagacc tttccccatc aaagattgga aaatggattc
4801 ctctcccaat ggccatggct gtgcctttcc ttgttggtgc ctactttgct atagatatgt
4861 gcatggggag tttggttgtt tttgtgtggc acaagstcaa cagcaagaag gcgagtttga
4921 tggttcctgc agtcgcctct ggtttgatct gtggagatgg attgtggatt ctcccttcct
4981 cagtcctygc cctggcyaag attaatcctc caatctgtat gagcttcttg gcgacttaga
5041 aaaacyagag ggaggggtat ggagtaggca agaactatag ttgwgtagga gacttcatgg
5101 ttaatttaaa ggcagatgtg acagagtttc aaataagtaa catgaataat acacatttgm
5161 ggtacacaac aatatgcatg ttctataatt tctttaacat tcatatatat atatatatat
5221 atatatatat atgagtaact tgctyacata tttcatcttt gttttgaata tygagttcta
5281 atmtctttga ctcgattctt atttttctga taaaatataa tacataaatt ctgaataaaa
5341 taatgggaca taaagaagat tgattttcat ggttggatga cacggtatgt gcatattgaa
5401 ggacggtcta aggagagaga aaaaagacca gggttgatcc atataaagtc taatgctttt
5461 atggattgga tggaatgttt tatcaaggtt ttctaggttt tttctttgaa gttattaggt
5521 actcatgtat aatgcaaaag ctttaaaagt atttcaatat ttttaattgt tgctcaaaaa
5581 accatataaa aagtatctaa aatatgttgt aaaaaactat ttttrgaact aaytataaaa
5641 aaactatttt ttgttaaaag tttgttaatg ygttctgtga gttagaaaat tgttttaaaa
5701 agcagttttc gaatgagatt stggycwatt tggaagcgtt ttaraaagca atcattggta
5761 acaattttta aaaacaattc ttaattgttt ttaagaacaa aattttatya acttaaaatt
5821 ttgaagttcc atattttcat tgttgcttas acaaaaacaa atgaaaacac ttaaaatata
5881 ttataaaaaa cagtctgttg cmtgaaaata aaaaactgtt ttttcaagag tcraaaacwa
5941 ttttcaattt ttaaagagma ctayatagga tatagtaraa ggtgggttgc agaggggaaa
6001 akggtakgga gctcaaccat atgaaatcta atgcctttat gggctgartg gccttttgag
6061 aagacaagat gtatatccaa gttccatcat tggaactgaa gttgcatgaa gatgaagatg
6121 gggraagtat ggaatgaagt atgcaactac ataaagaata aagtttggta ggccatcaca
6181 tcaaaatgag ycccaatcca ttccctttag cmaaaatggg tcatattctt caagccttgt
6241 ccrayacagg aattgactaa tgcctgwtgc aaaacactaa gcgaagtrar ctcatgagag
6301 ctgatgtgat ctgttttcat tttgagccac atttgtttya attycattga aaatcatctt
6361 caaaacccag gtggtggttt agactgttcw kctgatgttr gakgagttta caggcagcca
6421 ttacgcacca ccaaacacat gttgtatgat gagaataaag gttatacttc ccttctcttt
6481 ggcttgattt tgatatgctt caaagcattt cataatactt yaaaagccca ttatttttac
6541 ataaataagr tgtttgrcaa acttttaggt tatgtttgat tttcggaaaa tattaaaaaa
6601 akaaaawaaa wawtwtaaaa aatratattc ttatrtttrr tttcwccatt aaaaatataa
6661 aaaaaatcaa atawaattaw aattwwtaaw watttwtwta ttttaaaatt akttaatctt
6721 gatataacaa taaaaaataa ataaaataar tttaaaaaat atmtatraaa atartttatt
6781 raatttaaac ttatttattt atttattttt tcactttyac tttccttcaa ctttcccwcg
6841 crtttttcct caaattttat gaaaycaaac atagccttaw aatcactttt agycttattt
6901 gagatagttt tatgcccyta ttmttttatt ttaactgaaa ccaaaatcat aatttttaat
6961 tcttcaaaga tatagggctt ctacaagcaa caacatgatt ctttgcatat caagctcttt
7021 taaaactata agcccattaa acaaaattag taagaagctc ttattaagtt ttaaaaaaag
7081 tttaaacttt tccaaaggca attcaaacaa aaattgaata attgcccaaa gggttattga
7141 ggaaacatgt ttttgataga gtgcatttga caatattttt agaaaacaat ccaaacatag
7201 aaagtgagtt tagagaaaaa ttaggagtgt gtttcacagc aattctaaaa aatgttttta
7261 atttttttaa tacttgaatg cttctcttag ccagtaacaa ttttaaaaac acttttacca
7321 aattaagaaa tcacttataa gcttttgata aaaaaaaaaa aacaattcaa ctaaattcag
7381 gtgaaataga aacaatctta ttggtactca aagcaaacca tagcttttaa cttttagaca
7441 cgttaytcat ctaaaaggac aatggaatta aattctctaa atcctcattt ccactatgga
7501 tggtgcagag gagaggcatt agccgtagag tcagaactag aggacaaacc ttcccctata
7561 ttgtacaaag cctgcaattg cattgtaggc ccaaaattat tcattgaagg agggctgaga
7621 ttgaaaagat tttcatctat atagmtattc ccckcaatgt cccagaagcc wgatarggac
7681 aacaaacctc tccactccat atggtcaatg cctagcgccc tcaattctat twtcttcaac
7741 caacmaaaag aaaaagaaaa aaacccaact gggtttgaca tagagcacag tttgaaatgt
7801 mtaaggtcaa ctcaagctca aagaattttt tcaaagaact tggagtttgg agtttcagaa
7861 gaagtacagg gaaaaaaaaa ayccgttttg atcaaacctg agaaaattgc actattgtaa
7921 tctaagatga cagcatawtc aagcaaaatt gagggaaaaa ttagtagaaa tttttkacac
7981 ttcaactaca aaatgcaaat ggactgactt agaaaacaca caaaagctct caaatccctt
8041 ttcttcagtt tccatttttg gggggtgttt ttattggggg tttaatcgat gaaacctgtc
8101 ttctggaaaa ctgcgtttcg aactctcctc aaatctctac ctttcagcgt tcttccgacg
8161 ccctcgacca ccgaaaacgt catgacatga gaccttgcca cgatctcatg cggcggaagc
8221 atctccgcct tcgtatcatc ctcgagatcg tcggaatcgt ccagatcgga gcgtctccgc
8281 cgtacgccgt tgctaggcca tgccggaaca ttgaccggag ccgacatgag gaacttgccc
8341 gagccagagc cggtggaatc gccagagctc gatccggacc gcggaatcgg cactggcggg
8401 atcgtcctgg cggcggatgt ggcggagaat gagggatcta ggccggattg gcgtcggaga
8461 agggtcgggc ggtcgtcaga caagaccgaa gacaggccca atctcgccgg ctggaacttg
8521 agcmggagac tggacggagg gctggagtcc gtcgayggmg acggcgacgg cgagtttggg
8581 cctgcggaat cgggtgacca gaccacgtcg gactcgtcta actcsagcgg gttcgaatcc
8641 gagttgggtt gtttgagttg cctcaagaac cgatttgttg gtgaagacga gtgaaaattc
8701 atggytctct gaaattcgta ctttctktcc tattttcytt tgtcggaaat ttttgagagg
8761 aatggtgttt ggtagtcggg aaaatcagga aggcagaaag yaagtgggaa gatgctctgt
8821 tgtgcgccac acggttggtt gattctagtg ccactaaaat ggtgctggtt ggaaactaat
8881 aattataaat ttayaataag aatatttgat sagaagtctg tcacgggcgt tttggtcgtt
8941 atgaataatt agaaagggta aaatggtctg agaagtattt tcagcccaat ccgattaaaa
9001 atatcataaa cccgcaaart actggtgtct tgattttaaw wtttttttga aaaacaacca
9061 aaatattggg caaaaatttt gaaaaatata tgtagataac aaaataatat atattattgt
9121 atttaggcta tatttgatta ttgaaaagta ttaagaaaaa aattattaat ttttttatat
9181 ttagtttmat tatgaaaaat aagtaawttt twwaaaaaaa atataattaa aattaattaa
9241 atatttatac atttaaaamt tatttaattt ttatataata aataaaaata agttaaatga
9301 atttaaacaa ttacataaaa ataatttatt aacttttaat ctatttttat tttttaattt
9361 tcgtttctat tttctctcaa tttttttgaa aaccaaacat gaccttaaca taaagataat
9421 aactttttwa agtaattttt tggtgawata atattaacgt ggatagaaat tttatttcaa
9481 taaaaatata ttatatttta atatttaaaa ttaaaatata gctttgaaga aacatgaatt
9541 atgcaatgaa ttatatttta atattttaaa ttaaaatata ttatatttat caaataatta
9601 aaatttaccc caaaaaatct atatttaaaa attaacttaa aattatacaa tttttttttt
9661 tactcattcc atatttgttt aatatttttc taaaattatc ttaaaagatt attcacctaa
9721 aaaaattaaa aggtatccat aaaattatca attttgtata aatatttttt actatattta
9781 gaaaaaaata aattattaaa wttttttaat gagattttat attaaatatt taatttaaaa
9841 gttatttgaa agtttcatta acaaatttat ttgatatttt ttgttgtgaa tatattttta
9901 aatcattaaa attattgaaa gatgtattaa taatttattt tataaaatta atttttattt
9961 aatattaata ttttatgaaa tataaaaaaa atatttccat taatcttttt aatattgtag
10021 tggtttgtag attactttat ctttttttat atttaaaaat
//