LOCUS AM423508 6227 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV79X000644.2, whole genome shotgun sequence.
ACCESSION AM423508
VERSION AM423508.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 6227)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..6227
/organism="Vitis vinifera"
/chromosome="13"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
tRNA complement(2820..2893)
/gene="tRNA-Val"
/locus_tag="VITISV_014442"
/product="transfer RNA-Val"
/inference="protein motif:tRNAscan-SE"
CDS join(3077..3441,4150..4177)
/locus_tag="VITISV_014443"
/product="hypothetical protein"
/note="GO:0008289 GO:0006810 GO:0006869"
/note="weakly similar to EMBL:AP008218"
/db_xref="GOA:A5AD19"
/db_xref="InterPro:IPR000528"
/db_xref="InterPro:IPR036312"
/db_xref="UniProtKB/TrEMBL:A5AD19"
/inference="similar to DNA sequence:EMBL:AP008218"
/experiment="confirmed by EST"
/protein_id="CAN82043.1"
/translation="MXISHEMGGQKAVKVMGILMVLSWAQTTMAAIDCSXVTALVSAC
STFITYGAPXPIPGSPCCDAVVGLNSIADSIDNRRSVCRCLMGLIATYNPNATAIATL
PGFCGISLGFNLDPNTDCNLVDGAASNE"
BASE COUNT 1760 a 890 c 1069 g 2409 t
ORIGIN
1 tttttttttt ttttgcgtga ttggawgttt tgggctgtgt ttttgtgttt ttggtgaaat
61 gagttttttc cgtagaatgg ttctttgatg cttgatctct cttcgtggtt tttctagttt
121 ttgttgtgaa aatttgcgac ttggcattgg gctgacatga atttggaatt cttccttaac
181 ttgatgattg attcttgata cccatctctg aatttctgct tcttgtcgtt ctttttggtt
241 ttgattgcat ggtatgaatt tggtatcatc acctcaatgg atgatattat ttaayaccca
301 tartttcatt ttcccccagt tggttctgtt ccctgttctt cttgattttt agggtaagtt
361 ggaatcaatc tgatatgcat ttgagattct tattcaattt attccctgtt tttaataatt
421 cgtgaactag tactgatccg gcatgagttt tggggttctt agtctctgac ttttgtgggt
481 tcctgattga tcagatgttt tamctttcat tgcttacttt cccttttttt ttttttggaa
541 attcatttat gggatctctc ttggcatggt ttttgactct yaagtgtgtg gtttaaaatt
601 ttmtttcttt aaaattaatt tgtttttatt agaccctctg atgggtcttt ggagaacatg
661 aggaaacrkg aaggaaggtg cttaaaaraa ggtcactttg agaattttct tggaaaggcc
721 tacatgtttt gaggtgggag tttgatgagg tgggtttggc ttagttattt ttggtttctg
781 ttacaattat ctattgggat caatcttctt tcctgactac tacctcaaca agtgascaca
841 cttggacttc aatgtttttt tttaaaagta gattaggtag aagctagatt gatytctcat
901 tacatagtat gaactacagt taggttttgg gtttgacaat ttcatgaaat atctctaatg
961 tgacctgtaa atcaagtaaa gatcaagtct tcttgggtgg tggttgtaag ttttggatat
1021 attgtatcaa acctcaggta aatgtgattt gttgaacatg gttcacgact ccctgtgcct
1081 tatgaattgg aacttttggt gattcacaaa gatagtcaat tatgcaggag aaagagctgt
1141 ggaaatttat gttttacctc acgttacctg tttattgttt gtttgttatg cttcatcctg
1201 ctgcctgcaa ggcatttgtg agcaaatgca cactttagtc ttgtgcgatc tcatagattg
1261 gaaactgatg ttaaaaaaaa ttataaattg gtttagtcat tactctatga gctttataaa
1321 ctctcttatc attaaaggag gttgaactga aattgagttt ttatttttga agattggaaa
1381 agttgggagc tcttgagtgg aaaaaagttg tcagtaagca tcaaggatgg aggcttgtca
1441 cttgcatctg gttacatgct ggtatcattc atctgcttgt aaacatgttg agcttggtct
1501 tgattggtat tcgactcgaa cagcaatttg gttttggtat gtggttctct tgcttttagt
1561 gtgttgtcat tcaccttagg ctgatccgac tcccttgcct ctggacattg ttrtcttccc
1621 attccatatc attttatttt atttttgttc attttcttta gaactcccat gttatgagcc
1681 tcatagstaa yggcacttgg tatggtaact ctgacatgat cctcctagtt tgaatttctt
1741 tgtaagagtc cttctctggt tcttttttgt tagctatatc ttgatttggc ctgactaggg
1801 atatcgtttt ggcagtgcgg tataggagta atttacctgt tgtcaggatt tggagggagt
1861 gttctttcat ctctatttat tcaaaatagc atctctgttg gggcttctgg tgctcttttt
1921 gggcttttgg gagcaatgct ttcagagctt attacaaact ggtccatgta tacaaacagg
1981 gtgagcaatc tagcccactg ttgtcttact ccttaccctt tgagataatt agccttgttt
2041 gttgcttttg taggctgcag cactactcac actcttggtc attgttgcgg ttaatctaac
2101 cgttgggatt ctgccacgtg tcaataattt tgcccatatt ggtgggttcg tgacaggttt
2161 cttcctgggc tttattttga tgcctcgacc tcagtttggg tggatagagg gtcggaacct
2221 tccagctgat gtccgtgtca aatccaarta caaggcctac caatatgtgt gctggctggt
2281 ttctcttgtt ctgctgattg cagggtgagt tacattctga acatwaaaaa ygacgtgtca
2341 tattttgctt tcaaaatcaa ttctgatgat agaaaactaa cttgsaatcg tctttttctt
2401 gctttkaaca gatttacagt tggattagtg atgctgtaca agggaaagaa tgggagtgaa
2461 cactgccatt ggtgtcacta cctcagctgt gtcccaacct ctagctggaa atgcgatgag
2521 actcaatttt aggaggggtc cctctctctc tctctctctg tccctgtccc tgtccctatc
2581 tttgctagtg tgtaaattgc atagtgatag cttcagtaga tagagcctaa accaagtttc
2641 aagttgttgg cttgttttga tgtatgtata agtgggtgtt gttactgttg tatttgctct
2701 tacacaagat ttcttattga attctgttga gatgaccaac aagaattagg cttcaccatc
2761 tcattactyy ttaattccta ytcagttggg aaaaaaaatg tgcttgcatg ataaaaaaat
2821 ggcgtcgccc gggttcgaac cggagacctt cagtgtgtta gactgacgtg ataaccaact
2881 acaccacgac accgctttgc tgtggawcag cccaattaag taatgastcc aaaagtggat
2941 ttgcatgtct gtactggaca actcatccca tctkcatgaa gaacacacgt tcttcatttc
3001 ctatcaaccc atcccatcag ccctataagg tttccatatt tcactcgaca ataaactaat
3061 agtattgatg gtgagaatgg ygatttctca tgaaatgggc ggccagaagg cagtgaaggt
3121 gatgggaatt ttgatggtgc tatcatgggc ccaaacaaca atggctgcca tagactgcag
3181 taycgtgaca gcgctggtct ccgcctgctc caccttcatc acctacggtg ccccagascc
3241 catccctggc tccccttgct gtgatgctgt ggtgggcctc aacagcattg cggactccat
3301 tgataaccgg cgatcagttt gccggtgctt aatgggcctc attgctactt acaatcctaa
3361 tgctactgcc atagctacat tgcctgggtt ctgtggcatc tctctcggct tcaatcttga
3421 tcccaatact gactgcaact tgtaactctc tctctactct acccctttgg ttttattttt
3481 tcttctcttc ataattcatg gattggtttt atgagtaggc ccatgatggg cttcccctgc
3541 tttttctggc ccaaataggt ccatagctcc ttggttttga cgwaacatgc tcaaggaaaa
3601 tsattttctt tttttggttt ttatataaaa aaaatatgca agaaaattaa atataatgaa
3661 aatacaaagt taaaataagt aaagtrcctt taaagtaaca tataacaata wtttattaat
3721 tttawatcta tttttttact tttttatttt ctttttactt tcttgtattt tttttcttaa
3781 ttttattaaa aatcaaatat aattttaaag ttattacttg attagtataa agataattcg
3841 atctagctag gttttgacat gaacataaac aaatcaaagt ccgatagaaa agcggttttg
3901 atttaaacac ttttaattta tttcggtttt taaaaataac ttttgaaaga aattagaatc
3961 aactatcaag tgattatggt accgctaaat aatcttttaa aattttgaag taatttttag
4021 atatttataa aaatctaaat ttttattaga aaatgcttga aaaatgcttt taacaacatc
4081 ttatctattg acatttaaaa atcttagtag aagtacaatg aattgtagaw gatgatgcta
4141 tttttgcagg gtggatggtg cggcatctaa tgagtgaaag ggtgacagca gattgatggc
4201 cagagactca caataagaaa agcttgtatc aagctgcagt gggcaggagt tttaataaat
4261 aaatcaactt ctattttttt ttttttgttt ttgtttttgt ttttgctttt gggaaaacca
4321 aaataatatt tgtaaaattg aggatttgat gatgttataa atttgggtac cttgtagaac
4381 tatagattaa aattagtgca ctataaatgc ctcttcatgc atatacgtcc amttgatact
4441 aaatgctttt ttatctttat ttctataaaa atatttggcc aaatctctaa agatgatatt
4501 tttattataa atattttatt aaatataaaa taattttaaa atatttttat aagaattgtt
4561 catkctcttt ttagtcaaaa attgttttra taaaaatatt ccaacacsca aagaaaaatt
4621 tatccctctt gacmtttcaa gttatatttg gaagctagag ttctcccatg tatccataaa
4681 ytatatatta aaycattaat tttttttttg ttrayttaac ctrtcattag tgggttattt
4741 gacmtgttgt ttaaaatagt tttcaaaata taactsttrm swrcaacttt ttmaawwtma
4801 yttttaattw ttyatagaaa ttccgwryty yrwtygwkat awawamwatw tmaaatagtt
4861 ttkawwkatg wawwagtgak akaawrttrw gaaawtwtaw ytswtawgaa mrcttctwaa
4921 rwtttatata tatatatata tatatatata tatatatata tatatatata tatatatata
4981 tttaattatt ttttgaaata ttcttaaaaa aatacctaga aaaaaaaaat ctaacaatct
5041 atttttaaaa ttttggtttt aataaaaatt tattaaaaat attttgtaaa tttaaaaacc
5101 gttttacatg attaaaagtg agttcaatgt ttttatttag agtgttttca atgaaaatgt
5161 ttttttttta aattttttta atttttttaa gagaattgtt tattaaattt ttctttaaaa
5221 aataccgtta gttatttttt taacattata aatgattttc atatttttaa aaatgttttt
5281 agtttttatt taaaaataat ttttaagtta aaaacgcttt ttaaaatcac cacaaaacaa
5341 aatctaagaa caacctccaa atatgttcta tattactttt cttcgtagct atcacaactt
5401 gaaaatgatt ctaattttgg ggtgatttgt gtctttgaaa gtgacgattt gttttagaag
5461 caaaatatgg aggaacatat tttagaattg actttgaaaa tttatgatga atcgtactgt
5521 ttccattttc attccttttt taggaaaatt gaaaatagtt tttatttcca ttactaaata
5581 agtaaatagg cgttgaacaa cactgcaatt attcatccgt acttgagttg ttggatttag
5641 aattgcaaat caaccttctt tttcccatta ttgatggtag agtgtggtgg acggtccatc
5701 ttatttattt aggtttctgc ttggaatctt gcagggttag gagatatttg agtagcattt
5761 atttctttca agttaaatct tatttttaga tattattttt ttaaatacat agaaagttta
5821 aagtttaatt tttattataa atgtgaaaca tgaataatac ttctcggtca tgttggtaca
5881 ttgagaacga ggaatgagaa tgaatatttt gttttcagtt ttatttttct ttgaataaga
5941 ataaatttat agattcaaat tattgtgtgt ggatgaatat aagaatgtaa ggtataatga
6001 ttattttttt gtttgaagaa taatttattt taaaagttgg aatgaataat aataatataa
6061 ttaaaaataa atttttttat tagagaaaag aatttcaaat taagtaatga tttttaaaaa
6121 tagtttgaaa ttttaaaaat atatataatg agtataaaaa taatagatat aattaatatt
6181 ttaaattctt taatgaatat tttaattttt aagaataatt caaaatt
//