LOCUS AM423352 5222 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X146036.8, whole genome shotgun sequence.
ACCESSION AM423352
VERSION AM423352.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 5222)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..5222
/organism="Vitis vinifera"
/chromosome="10"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(3345..3804,3878..4022,4355..4537,4694..4866,
4941..5194)
/locus_tag="VITISV_026193"
/product="hypothetical protein"
/note="GO:0004672 GO:0004713 GO:0004674 GO:0005524
GO:0000166 GO:0005529 GO:0006468"
/note="partially similar to EMBL:AP008210"
/db_xref="GOA:A5ACT5"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR000858"
/db_xref="InterPro:IPR001245"
/db_xref="InterPro:IPR003609"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR020635"
/db_xref="UniProtKB/TrEMBL:A5ACT5"
/inference="similar to DNA sequence:EMBL:AP008210"
/protein_id="CAN62300.1"
/translation="MFWFQPKTQCEVYAYCGPFGICHDHAVDRFCECLPGFEPGFPNN
WNLNDTSGGCVRKADLQCGNSTHXNGERDQFHRVSNVRLPDYPLTLPTSGVMQCESDC
LNNCSCSAYSYYMEKCTVWGGDLLNLQQLSDDNSNGQDFYLKLAASELSGKDEVHQRL
VTFISFCSFKQQVEGMANCYTGHFRNFGLCHLGDTEKATKKSEANKLWRGEKKEVDLP
MFSFVSVSAATNNFSIENKLGEGGFGPVYKVRFVSLTAMPFRKEMLSKRSGQGWEELK
NEAMLIAKLQHKNLVKLFGCCIEQDEKILIYEYMPNKSLDFFLFDSRGQELMDPVLEE
TLPRHILLKYINIGLLCVQESANDRPTMSDVVSMLGNESVHLPSPKQPAFSNLKVGWN
HIYPKTGLKFVP"
BASE COUNT 1741 a 916 c 967 g 1589 t
ORIGIN
1 tcaaataggg accccaacaa acaagagacc tcacaactga tgcatgctcc ttcagagtat
61 gaatacatgt aatgtattaa gatcccacac ctgaaaggaa tataataatc acttttgtat
121 aaacatttta ccaagaaata ttataaacca tgacaatgga acaactgagc agtgttaaag
181 actatcatta agtcaaataa cattaactac atattttaat gaaccatgaa ttttgcaatt
241 tggaaattca aataatttgt attaccagtg actgattttt ccaggactct aatgtacaac
301 atgctattac cattaaagag gagatttgcg taattgtcat atgcaacgat aatagaagct
361 tttgaattaa caaacctatt tctgctgaag ttgctcaatg aaattggctt tcaagtgcta
421 tttttccagt ccacatactt tgtatagatt caactatttt gcagttttca cataatggga
481 aatgataaaa caaacaccct taatataaaa acacaagctg acatatttcc aaaccactct
541 gcatagaaaa atgatataat agtacataaa agagtttaat taaacctact cttattgtat
601 tgtccatgga accagaatat agcctcccaa caccaactgt gagcgaaacc acagcacaat
661 tgtggcctcc caatgttgta gccagctcaa aagcattggt ttccttattg gctttccatg
721 catatatagt gccattctgc agcaccaaaa atttaaaata agaaataact ttgtagtgtg
781 accccaacat gttgaaatag cgaaagagaa aaaaaaaagt tggactcaaa tgtgcaagtt
841 ctttcacact gccattttca ggttgtaaag ctgtatggga agttggcact ccattagtcg
901 tttacagggg tcagatgata taccaaatca ttaccattcc taagagcagg acacagaaag
961 ttacaccaga tataaggagt catcaagaaa tttacctctg cccctgcgaa gagcatatca
1021 tgatccacca ccatagcata aatttgccca actggtccat ccagagagag attggcacaa
1081 gactcaatat tccatgcctg aaacattacc agcatagatt cgatcagata catcaaatta
1141 taatcaaact gaattgaaca aacaaattga agagaaaagg aataagatgt gtttcaatct
1201 taccttaaca acatctttta ttccagcaaa tacccaaggg cctgcactga ttaaggaccc
1261 aatttcccct ccaagattga ccacaccatc acattgacca gtatggcagt cccaaacccg
1321 tatataccca tctctactgg cagtatagag cttctctgag ccagaaggaa acacaattcc
1381 tgagatggcc tgaacaaaga aaaaaaaatc tcatggataa gatgttgttc aatttaacca
1441 attaacaaaa gcaccatctt aattactgcc accaactacc ttgatgtgcc cattaagctc
1501 tgccaacttg aaaaccccat ggcccttaaa ccatgaatgg agatactggc acttatctgc
1561 ctccacacaa tttccatgta ctgaataata aattttacag atattcatta ttaacaatat
1621 tttatttaaa ataattttaa aaacaaataa agtttaaatt ttttaacata aataaaccaa
1681 aattttcatt acatgcaaat atgtagcaat caattacaag cacaaagtat tctagaatgc
1741 tttgatttat tctacaatta attttatcaa ttttttgaat tgcaaattat tcttaaaaat
1801 tagtagatta aaaaaattaa attattaatt atgtcttact taatttaaaa tctatttatt
1861 tagtgagaaa aatcaaaaaa tataattgtt tatatataag aaattgtaaa gttatgactc
1921 ataatatatc cattttggtt tattattttt tctagtaatt aaatatattt tttgagttct
1981 aaatttcctt taaaaatgat taaacccatt aataaattaa atacaaagca gcatttaatt
2041 tgaattttat aaaaaaattt ataaaaatat aataatgtgc ataaaataaa ttatagaatc
2101 atagtgaatc aatttttatc aataaatttc taatactaat tgagtcacta ttggagtttt
2161 aattttattt ttaaattatt agaccaagaa ttaggtctta gttaatttga aggtagttgt
2221 ccagtgaaat atatatataa acataaggtt ctatgtagaa aaggaaaatt agggtcattg
2281 gaaaattaag atgaatgttg aagatcacat ccaatggccc aagatgttct tctgtacctt
2341 cctcatagta ccctataatt ttcctgaaag acatattaga agggagaaca gtggaaagga
2401 gactttgacc gagtcgccgg gcctcagatc tgctactgcc tgttttggat ggctataagt
2461 ttattggtgg gctgcttaaa cgcggcttat gagttatggc tagcatgaaa ttttcaacca
2521 gaaggtggtc tgttattctt gttttcttgc ttatttcttc aggttttcac ttggaatttg
2581 ctgatgcatt tacagataca atttcacaag gtcaatcaat cacaacctct cagaccatca
2641 tatctgcggg tggtgaattt gaattaggat tcttttctcc tggaaactcc acaaaatayt
2701 atgtggggat atggtacaag aaaatatcag agccaaccat tgtgtgggta gctaaccgag
2761 attatccatt cacaaatccg tctgtggttc ttactgtcag gacagatggt aacctcgagg
2821 tttgggaggg gaaaatttca tacagggtga caaacatatc atcaaacagm aaaactagtg
2881 ccaccctatt ggattctgga aatcttgttt tgagaaatga caactcgagt atcttatggc
2941 aaagctttga cyatccatcg gacactttct tgccggggat gaaacttgga tacgacaraa
3001 gggctggaaa aacatggtca ttagtgtcat ggaagagcac agaagatccc agtccaggag
3061 ttttctccat gaagtacgac cctaagggaa gcggccagat ttttatcttg caagggtcca
3121 caatgtactg ggctagtggc acctgggaca gggatgggca ggctttcagc ttgattcgtg
3181 agatgcgctc aaacgatgtg tttaatttca gttattcgtt tagtaaggag gagagctata
3241 tcaattactc tatttataat tcttcaawaa tawgcagatt cgtgctggat gtgtcagggc
3301 agattaaaca aatgtcatgg cttgaagcct ctcatcaatg gcatatgttt tggtttcaac
3361 caaaaacgca atgtgaggtt tatgcttact gtgggccttt tggaatctgt catgaccatg
3421 cagtcgatag attctgtgaa tgtttgccag gttttgaacc tggcttccct aataactgga
3481 acttgaacga cacatctgga gggtgtgtga ggaaagcaga tttgcagtgt ggcaatagta
3541 ctcatsctaa tggggagaga gaccagtttc atcgggtgtc taatgtgagg ctgccagatt
3601 atccactaac actcccaacg agtggtgtca tgcagtgcga gtcagattgc ctaaataact
3661 gctcttgctc tgcttattct tactacatgg agaagtgtac agtatggggt ggagatcttc
3721 taaacttgca acagctatca gatgacaaca gtaatggtca agatttctat ctcaaacttg
3781 cggcctctga gctaagtggg aaaggtaata aaagtaggga atggtcaaac tttttttgta
3841 ggacagagca tatgattttc tttttcttaa atataagatg aagttcatca aagattagtt
3901 acatttattt ctttttgcag tttcaagcag caagtggaag gtatggctaa ttgttacact
3961 ggccatttcc gtaacttcgg cctttgtcat ttgggggata cggagaaggc tacgaagaaa
4021 aggtcagtat ttttcatgga tagaagatgg ccaagcaatt caagggcatt tagattccat
4081 ctacacatac aaaaccattt cttttctgca atgagttcat taccattgtt gtagaataat
4141 taaggcctta ttaggatttc gatctcctga ttacatgtga gtgtgtacca ggcactacag
4201 tgtgataaaa atcaataatg aaacaattta ttcccattcc agaattccta cattcttaag
4261 atacttaaca tctgtttgtt ctttatcaag caggggaaaa tttgttacta tttgatttaa
4321 gtaacagctc agtagatacc aactatgaac ttagtgaggc aaataaactt tggagaggtg
4381 agaagaagga agttgatttg ccaatgttca gttttgtgag tgtatctgct gctaccaata
4441 acttctctat tgaaaataaa ctaggagagg gtggttttgg wcctgtttac aaggtgagat
4501 tcgtatcatt aacagcaatg cctttcagaa aagaaatgtg aaaattcttc tgactgttct
4561 acaatctgtc cttaactgta aaggcccact aggtaaatac aaattttctt ttacttgatg
4621 taattgtact cagccgaaat tcccattaca gggaaagtca caaaaagggt atgagctagg
4681 tagctgtgaa gaggctttca aaaagatctg gacagggatg ggaggagtta aaaaatgagg
4741 ccatgctcat agccaagctg caacataaga atcttgtgaa gctattcggc tgctgcattg
4801 agcaagatga gaagatattg atttatgagt atatgcccaa caaaagcttg gatttcttcc
4861 tatttggttt gtaacttcta catatctgaa cttctagctr ttgtgtattc aataaaaaaa
4921 ggcatgggat ctgtggaaag acagcagggg acaggaattg atggatccag tgttggaaga
4981 gacattgcca agacacattc tgttgaagta catcaatata ggccttcttt gtgttcaaga
5041 aagtgcaaat gacaggccta ccatgtctga tgttgtctca atgcttggca atgaaagtgt
5101 acatttacct tctccaaaac aaccggcatt ttcaaatctg aaagtggggt ggaaccacat
5161 atatcccaaa acaggcctga aatttgttcc ttaaatggtg tgacactttc aattatgcaa
5221 gg
//