LOCUS AK370300 2457 bp mRNA linear PLN 20-MAY-2011
DEFINITION Hordeum vulgare subsp. vulgare mRNA for predicted protein,
complete cds, clone: NIASHv2108H09.
ACCESSION AK370300
VERSION AK370300.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Hordeum vulgare subsp. vulgare (domesticated barley)
ORGANISM Hordeum vulgare subsp. vulgare
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.
REFERENCE 1 (bases 1 to 2457)
AUTHORS Matsumoto,T., Kanamori,H. and Tanaka,T.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Takashi Matsumoto
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; Kannondai 2-1-2, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Matsumoto,T., Tanaka,T., Sakai,H., Amano,N., Kanamori,H.,
Kurita,K., Kikuta,A., Kamiya,K., Yamamoto,M., Ikawa,H., Fujii,N.,
Hori,K., Itoh,T. and Sato,K.
TITLE Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs
Derived from 12 Clone Libraries
JOURNAL Plant Physiol. 156, 20-28 (2011)
COMMENT This clone was obtained at our laboratory
Please visit our web site
URL: http://barleyflc.dna.affrc.go.jp/hvdb/index.html
FEATURES Location/Qualifiers
source 1..2457
/clone="NIASHv2108H09"
/clone_lib="Normalized and subtracted barley full-length
cDNA library from seedling shoot and root on Aluminium
stress"
/cultivar="Haruna Nijo"
/db_xref="taxon:112509"
/dev_stage="seedling"
/mol_type="mRNA"
/organism="Hordeum vulgare subsp. vulgare"
/sub_species="vulugare"
/tissue_type="shoot and root"
CDS 18..2228
/codon_start=1
/product="predicted protein"
/protein_id="BAK01501.1"
/translation="MEDSKTTEKIDPSSSSSCSLRSAATTHWKEETRATFNSVRPSYR
RIPGPRTPATVPHSHPGPSPEAMAAPPGRRGLAFGTAALALLAILAVARGQQQYEANA
QTNCYGRNGSSVLGYVCNATAAAAPCATYVVFRSSPPYYGTAVSISYLLGSDPEAVAD
ANGVPTVSPLADSRLVLAPVPCGCSPRGYYQHNSSHTIELRGETYFIIANNTYQGLTT
CQALLAQNPRHGSRDLVAGNNLTVPIRCACPTPAQAAAGVRHLLTYLVTWGDSVSAIA
DRFRVDAQAVFQANNLTAREIIFPFTTLLIPLKSAPTPDMLVSPAPPPAPAPPQAQQP
PASGSGKWIAVGVGVGVGVLALASLIGLMLLCVRRRRTRQGVRERGRLSKVVLDVPSS
ADYNALASGKHASSATTTSASSSALVSSDARAAVESLTVYKYSELEKATAGFSEDRRV
KNASVYRAEINGDAAAVKRVAGDVSGEVGILKRVNHSSLVRLSGLCVHHGETYLVFEF
AENGALSDWLHGGGATLVWKQRVQAAFDVADGLNYLHHYTNPPCVHKNLKSSNVLLDA
NLRAKVSSFALARSVPTGADGGDAQLTRHVVGTQGYLAPEYLEHGLITPKLDVFAFGV
ILLELLSGKEAMFNGGDKRGETLLWESAEGLVVDNEDARGKVRPFMDPRLHGDYPLDL
AVAVASLAVRCVAREPRRRPSIDVVFATLSAVYNSTLDWDPSDDGNSRSSIVGR"
BASE COUNT 448 a 836 c 724 g 449 t
ORIGIN
1 ggcatctttt ttccgaaatg gaagactcga agacgactga aaagattgac ccgtcttcta
61 gctccagctg tagtctacgc tctgcagcaa ccacccactg gaaagaggaa accagagcca
121 cctttaattc cgtccgtccg tcgtaccgcc gcatacccgg gccgagaacg ccggccacag
181 tgccacactc ccaccccggt ccgtcccccg aagcaatggc cgctccgccg ggcagacggg
241 ggctcgcctt cggcacggcg gcgctcgcgc tcctcgccat cctcgccgtc gcgcgagggc
301 agcagcagta cgaggccaac gcgcagacca actgctacgg cagaaacgga agctccgtgc
361 tcggctacgt ctgcaacgcc accgccgcgg ccgccccctg cgccacctac gtcgtcttcc
421 gctcctcccc gccgtactac ggtacggccg tctctatctc ctacctcctc ggctccgatc
481 cggaagccgt cgcggacgcc aacggcgttc caaccgtctc cccgctcgcc gactcccgcc
541 tcgtgctcgc gccggtcccg tgcggctgct ctccgcgcgg ctactaccag cacaactcca
601 gccacaccat cgagctacgc ggcgagacct acttcatcat cgccaacaac acctaccagg
661 gcctcaccac ctgccaggcg ctcctcgcgc agaacccaag gcacggcagc cgcgacctcg
721 tcgccgggaa caacctcacc gtgccgattc gctgcgcgtg ccccacgccg gcacaggccg
781 ccgctggggt caggcacctg ctcacctacc tcgtcacgtg gggcgacagc gtctcggcca
841 tcgccgatcg cttccgtgtc gacgcccagg ccgtgttcca ggctaacaac ctcaccgcta
901 gagagatcat attccccttc accactctgc tcataccgct caagagcgcg cccacgccgg
961 acatgctcgt gtcgcctgcg ccgccgcccg cacccgcgcc gccgcaggcc cagcagccgc
1021 cggcgtccgg cagcgggaag tggattgccg tcggggtcgg tgttggtgtc ggcgttcttg
1081 cgctggcgag tcttattggc ctgatgttgt tatgtgtccg ccggcggcgg acacggcaag
1141 gcgttaggga aaggggccgt ttgagcaagg tggttctcga cgtgccctcg tcggcggatt
1201 acaacgctct tgcctcgggc aagcatgcat cgtcggctac gacgacctcc gcatcttcat
1261 cggcgttggt gtccagcgat gcgcgcgccg cggtggagtc cctgaccgtg tacaagtact
1321 cggaactcga gaaggcgaca gctggtttct cggaggaccg gagggtcaag aacgcgtccg
1381 tgtaccgcgc ggagatcaac ggcgacgcgg cggccgtgaa gcgggtggcc ggcgatgtga
1441 gcggcgaggt gggcatcctg aagcgtgtga accactccag cctcgtccgc ctgtctggtc
1501 tctgcgtcca ccacggcgaa acctacctcg tgttcgagtt cgccgagaac ggcgcgctca
1561 gcgactggct ccacggcggc ggcgccaccc tcgtgtggaa gcagcgcgta caagcggcct
1621 tcgacgttgc cgacggcctc aactacctcc atcattacac caacccgccg tgcgtgcaca
1681 agaacctcaa gagcagcaat gtcctcctcg acgccaacct ccgcgccaag gtgtcaagct
1741 tcgcgctagc gcggtcagtc cccaccggcg ctgatggcgg cgacgcgcag ctcacccgcc
1801 acgtcgtggg cacccagggg tacctggccc cagagtacct ggagcatggc ctcataacgc
1861 ccaagctcga cgtttttgcc ttcggcgtca tcctcctcga gctgctgtcc gggaaggagg
1921 cgatgttcaa cggcggcgac aaacgagggg agacgctgct gtgggagtca gcggagggac
1981 tggtcgtgga caacgaggac gcacgcggca aggtgcggcc gttcatggac ccgcggctgc
2041 acggcgacta cccgctggac cttgccgtcg ctgtggcgtc gctggcggtg cggtgcgtgg
2101 cgagggagcc caggaggcgg ccgtccatag acgtggtgtt cgcgacgctg tcagcggtgt
2161 acaactccac gctggactgg gatccctcgg atgacggcaa ctctcgctct tcgatcgtcg
2221 ggagatagta ttacagagca aaatcacttt atgtgtaagc gagagtgaag aacccatgta
2281 tgtatattta tttatttatt ttagtcgtga cagtactatt aaatttgttc aacataatta
2341 taaatcagtt gctggatgct cggcagagac cgtggcgcat ggctgctacg aagcgtctat
2401 tttaaacctt gtatttgtag atgaggttga aatcaaatcc taaactttaa atccctg
//