LOCUS AK294436 2989 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ50953 complete cds, highly similar to
Integrin alpha-6 precursor.
ACCESSION AK294436
VERSION AK294436.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2989)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2989
/clone="BRAMY3004610"
/clone_lib="BRAMY3"
/db_xref="H-InvDB:HIT000489060"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 79..2544
/codon_start=1
/note="highly similar to Integrin alpha-6 precursor"
/protein_id="BAG57680.1"
/transl_table=1
/translation="MMNSYLGFSLDSGKGIVSKDEITFVSGAPRANHSGAVVLLKRDM
KSAHLLPEHIFDGEGLASSFGYDVAVVDLNKDGWQDIVIGAPQYFDRDGEVGGAVYVY
MNQQGRWNNVKPIRLNGTKDSMFGIAVKNIGDINQDGYPDIAVGAPYDDLGKVFIYHG
SANGINTKPTQVLKGISPYFGYSIAGNMDLDRNSYPDVAVGSLSDSVTIFRSRPVINI
QKTITVTPNRIDLRQKTACGAPSGICLQVKSCFEYTANPAGYNPSISIVGTLEAEKER
RKSGLSSRVQFRNQGSEPKYTQELTLKRQKQKVCMEETLWLQDNIRDKLRPIPITASV
EIQEPSSRRRVNSLPEVLPILNSDEPKTAHIDVHFLKEGCGDDNVCNSNLKLEYKFCT
REGNQDKFSYLPIQKGVPELVLKDQKDIALEITVTNSPSNPRNPTKDGDDAHEAKLIA
TFPDTLTYSAYRELRAFPEKQLSCVANQNGSQADCELGNPFKRNSNVTFYLVLSTTEV
TFDTPDLDINLKLETTSNQDNLAPITAKAKVVIELLLSVSGVAKPSQVYFGGTVVGEQ
AMKSEDEVGSLIEYEFRVINLGKPLTNLGTATLNIQWPKEISNGKWLLYLVKVESKGL
EKVTCEPQKEINSLNLTESHNSRKKREITEKQIDDNRKFSLFAERKYQTLNCSVNVNC
VNIRCPLRGLDSKASLILRSRLWNSTFLEEYSKLNYLDILMRAFIDVTAAAENIRLPN
AGTQVRVTVFPSKTVAQYSGVPWWIILVAILAGILMLALLVFILWKCGFFKRNKKDHY
DATYHKAEIHAQPSDKERLTSDA"
BASE COUNT 934 a 583 c 655 g 817 t
ORIGIN
1 gtttcctata cagatcctga tcagtttgtt tataaaacac ggcctccccg ggagcagcct
61 gacacattcc ctgatgtgat gatgaatagc tacctaggtt tttctttgga ctcagggaaa
121 ggtattgttt ctaaagatga gatcactttt gtatctggtg ctcccagagc caatcacagt
181 ggagccgtgg ttttgctgaa gagagacatg aagtctgcac atctcctccc tgagcacata
241 ttcgatggag aaggtctggc ctcttcattt ggctatgatg tggcggtggt ggacctcaac
301 aaggatgggt ggcaagatat agttattgga gccccacagt attttgatag agatggagaa
361 gttggaggtg cagtgtatgt ctacatgaac cagcaaggca gatggaataa tgtgaagcca
421 attcgtctta atggaaccaa agattctatg tttggcattg cagtaaaaaa tattggagat
481 attaatcaag atggctaccc agatattgca gttggagctc cgtatgatga cttgggaaag
541 gtttttatct atcatggatc tgcaaatgga ataaatacca aaccaacaca ggttctcaag
601 ggtatatcac cttattttgg atattcaatt gctggaaaca tggaccttga tcgaaattcc
661 taccctgatg ttgctgttgg ttccctctca gattcagtaa ctattttcag atcccggcct
721 gtgattaata ttcagaaaac catcacagta actcctaaca gaattgacct ccgccagaaa
781 acagcgtgtg gggcgcctag tgggatatgc ctccaggtta aatcctgttt tgaatatact
841 gctaaccccg ctggttataa tccttcaata tcaattgtgg gcacacttga agctgaaaaa
901 gaaagaagaa aatctgggct atcctcaaga gttcagtttc gaaaccaagg ttctgagccc
961 aaatatactc aagaactaac tctgaagagg cagaaacaga aagtgtgcat ggaggaaacc
1021 ctgtggctac aggataatat cagagataaa ctgcgtccca ttcccataac tgcctcagtg
1081 gagatccaag agccaagctc tcgtaggcga gtgaattcac ttccagaagt tcttccaatt
1141 ctgaattcag atgaacccaa gacagctcat attgatgttc acttcttaaa agagggatgt
1201 ggagacgaca atgtatgtaa cagcaacctt aaactagaat ataaattttg cacccgagaa
1261 ggaaatcaag acaaattttc ttatttacca attcaaaaag gtgtaccaga actagttcta
1321 aaagatcaga aggatattgc tttagaaata acagtgacaa acagcccttc caacccaagg
1381 aatcccacaa aagatggcga tgacgcccat gaggctaaac tgattgcaac gtttccagac
1441 actttaacct attctgcata tagagaactg agggctttcc ctgagaaaca gttgagttgt
1501 gttgccaacc agaatggctc gcaagctgac tgtgagctcg gaaatccttt taaaagaaat
1561 tcaaatgtca ctttttattt ggttttaagt acaactgaag tcacctttga caccccagat
1621 ctggatatta atctgaagtt agaaacaaca agcaatcaag ataatttggc tccaattaca
1681 gctaaagcaa aagtggttat tgaactgctt ttatcggtct cgggagttgc taaaccttcc
1741 caggtgtatt ttggaggtac agttgttggc gagcaagcta tgaaatctga agatgaagtg
1801 ggaagtttaa tagagtatga attcagggta ataaacttag gtaaacctct tacaaacctc
1861 ggcacagcaa ccttgaacat tcagtggcca aaagaaatta gcaatgggaa atggttgctt
1921 tatttggtga aagtagaatc caaaggattg gaaaaggtaa cttgtgagcc acaaaaggag
1981 ataaactccc tgaacctaac ggagtctcac aactcaagaa agaaacggga aattactgaa
2041 aaacagatag atgataacag aaaattttct ttatttgctg aaagaaaata ccagactctt
2101 aactgtagcg tgaacgtgaa ctgtgtgaac atcagatgcc cgctgcgggg gctggacagc
2161 aaggcgtctc ttattttgcg ctcgaggtta tggaacagca catttctaga ggaatattcc
2221 aaactgaact acttggacat tctcatgcga gccttcattg atgtgactgc tgctgccgaa
2281 aatatcaggc tgccaaatgc aggcactcag gttcgagtga ctgtgtttcc ctcaaagact
2341 gtagctcagt attcgggagt accttggtgg atcatcctag tggctattct cgctgggatc
2401 ttgatgcttg ctttattagt gtttatacta tggaagtgtg gtttcttcaa gagaaataag
2461 aaagatcatt atgatgccac atatcacaag gctgagatcc atgctcagcc atctgataaa
2521 gagaggctta cttctgatgc atagtattga tctacttctg taattgtgtg gattctttaa
2581 acgctctagg tacgatgaca gtgttccccg ataccatgct gtaaggatcc ggaaagaaga
2641 gcgagagatc aaagatgaaa agtatattga taaccttgaa aaaaaacagt ggatcacaaa
2701 gtggaacgaa aatgaaagct actcatagcg ggggcctaaa aaaaaaaagc ttcacagtac
2761 ccaaactgct ttttccaact cagaaattca atttggattt aaaagcctgc tcaatccctg
2821 aggactgatt tcagagtgac tacacacagt acgaacctac agttttaact gtggatattg
2881 ttacgtagcc taaggctcct gttttgcaca gccaaattta aaactgttgg aatggatttt
2941 tctttaactg ccgtaattta actttctggg ttgcctttat ttttggcgt
//