LOCUS AK292941 3452 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78660 complete cds, highly similar to Homo
sapiens interferon induced with helicase C domain 1 (IFIH1), mRNA.
ACCESSION AK292941
VERSION AK292941.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3452)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3452
/clone="TRACH3023213"
/clone_lib="TRACH3"
/db_xref="H-InvDB:HIT000425738"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="trachea"
CDS 316..3393
/codon_start=1
/note="highly similar to Homo sapiens interferon induced
with helicase C domain 1 (IFIH1), mRNA"
/protein_id="BAF85630.1"
/transl_table=1
/translation="MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKE
QIQRTVATSGNMQAVELLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDL
PSPSFENAHDEYLQLLNLLQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGN
ESGVRELLKRIVQKENWFSAFLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGP
QVEEQLLSTTVQPNLEKEVWGMENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGH
NSNMGSDSGTVGSDSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSG
KTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG
DTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK
EAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILK
LCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQ
MSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT
HLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFE
NNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITE
NEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI
KECNIVIRYGLVTNEIAMVQARGRARADESTCVLVAHSGSGVIERETVNDFREKMMYK
AIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHFKNNPSLITFLCKNCSVLA
CSGEDIHVIEKMHHVNMTPEFKELYIVRENKTLQKKCADYQINGEIICKCGQAWGTMM
VHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECCLFSDED"
BASE COUNT 1152 a 687 c 786 g 827 t
ORIGIN
1 acagaaacca aagtcaggca aactctgtaa gaactgcctg acagaaagct ggactcaaag
61 ctcctacccg agtgtgcagc aggatcgccc cggtccggga ccccaggcgc acaccgcaga
121 gtccaaagtg ccgcgcctgc cggccgcacc cgccggcctg agagccctgt ggacaacctc
181 gtcattgtca ggcacagagc ggtagaccct gcttctctaa gtgggcagcg gacagcggca
241 cgcacatttc acctgtcccg cagacaacag caccatctgc ttgggagaac cctctccctt
301 ctctgagaaa gaaagatgtc gaatgggtat tccacagacg agaatttccg ctatctcatc
361 tcgtgcttca gggccagggt gaaaatgtac atccaggtgg agcctgtgct ggactacctg
421 acctttctgc ctgcagaggt gaaggagcag attcagagga cagtcgccac ctccgggaac
481 atgcaggcag ttgaactgct gctgagcacc ttggagaagg gagtctggca ccttggttgg
541 actcgggaat tcgtggaggc cctccggaga accggcagcc ctctggccgc ccgctacatg
601 aaccctgagc tcacggactt gccctctcca tcgtttgaga acgctcatga tgaatatctc
661 caactgctga acctccttca gcccactctg gtggacaagc ttctagttag agacgtcttg
721 gataagtgca tggaggagga actgttgaca attgaagaca gaaaccggat tgctgctgca
781 gaaaacaatg gaaatgaatc aggtgtaaga gagctactaa aaaggattgt gcagaaagaa
841 aactggttct ctgcatttct gaatgttctt cgtcaaacag gaaacaatga acttgtccaa
901 gagttaacag gctctgattg ctcagaaagc aatgcagaga ttgagaattt atcacaagtt
961 gatggtcctc aagtggaaga gcaacttctt tcaaccacag ttcagccaaa tctggagaag
1021 gaggtctggg gcatggagaa taactcatca gaatcatctt ttgcagattc ttctgtagtt
1081 tcagaatcag acacaagttt ggcagaagga agtgtcagct gcttagatga aagtcttgga
1141 cataacagca acatgggcag tgattcaggc accgtgggaa gtgattcaga tgaagagaat
1201 gtggcagcaa gagcatcccc ggagccagaa ctccagctca ggccttacca aatggaagtt
1261 gcccagccag ccttggaagg gaagaatatc atcatctgcc tccctacagg gagtggaaaa
1321 accagagtgg ctgtttacat tgccaaggat cacttagaca agaagaaaaa agcatctgag
1381 cctggaaaag ttatagttct tgtcaataag gtactgctag ttgaacagct cttccgcaag
1441 gagttccaac catttttgaa gaaatggtat cgtgttattg gattaagtgg tgatacccaa
1501 ctgaaaatat catttccaga agttgtcaag tcctgtgata ttattatcag tacagctcaa
1561 atccttgaaa actccctctt aaacttggaa aatggagaag atgctggtgt tcaattgtca
1621 gacttttccc tcattatcat tgatgaatgt catcacacca acaaagaagc agtgtataat
1681 aacatcatga ggcattattt gatgcagaag ttgaaaaaca atagactcaa gaaagaaaac
1741 aaaccagtga ttccccttcc tcagatactg ggactaacag cttcacctgg tgttggaggg
1801 gccacgaagc aagccaaagc tgaagaacac attttaaaac tatgtgccaa tcttgatgca
1861 tttactatta aaactgttaa agaaaacctt gatcaactga aaaaccaaat acaggagcca
1921 tgcaagaagt ttgccattgc agatgcaacc agagaagatc catttaaaga gaaacttcta
1981 gaaataatga caaggattca aacttattgt caaatgagtc caatgtcaga ttttggaact
2041 caaccctatg aacaatgggc cattcaaatg gaaaaaaaag ctgcaaaaga aggaaatcgc
2101 aaagaacgtg tttgtgcaga acatttgagg aagtacaatg aggccctaca aattaatgac
2161 acaattcgaa tgatagatgc gtatactcat cttgaaactt tctataatga agagaaagat
2221 aagaagtttg cagtcataga agatgatagt gatgagggtg gtgatgatga gtattgtgat
2281 ggtgatgaag atgaggatga tttaaagaaa cctttgaaac tggatgaaac agatagattt
2341 ctcatgactt tattttttga aaacaataaa atgttgaaaa ggctggctga aaacccagaa
2401 tatgaaaatg aaaagctgac caaattaaga aataccataa tggagcaata tactaggact
2461 gaggaatcag cacgaggaat aatctttaca aaaacacgac agagtgcata tgcgctttcc
2521 cagtggatta ctgaaaatga aaaatttgct gaagtaggag tcaaagccca ccatctgatt
2581 ggagctggac acagcagtga gttcaaaccc atgacacaga atgaacaaaa agaagtcatt
2641 agtaaatttc gcactggaaa aataaatctg cttatcgcta ccacagtggc agaagaaggt
2701 ctggatatta aagaatgtaa cattgttatc cgttatggtc tcgtcaccaa tgaaatagcc
2761 atggtccagg cccgtggtcg agccagagct gatgagagca cctgcgtcct ggttgctcac
2821 agtggttcag gagttatcga acgtgagaca gttaatgatt tccgagagaa gatgatgtat
2881 aaagctatac attgtgttca aaatatgaaa ccagaggagt atgctcataa gattttggaa
2941 ttacagatgc aaagtataat ggaaaagaaa atgaaaacca agagaaatat tgccaagcat
3001 ttcaagaata acccatcact aataactttc ctttgcaaaa actgcagtgt gctagcctgt
3061 tctggggaag atatccatgt aattgagaaa atgcatcacg tcaatatgac cccagaattc
3121 aaggaacttt acattgtaag agaaaacaaa acactgcaaa agaagtgtgc cgactatcaa
3181 ataaatggtg aaatcatctg caaatgtggc caggcttggg gaacaatgat ggtgcacaaa
3241 ggcttagatt tgccttgtct caaaataagg aattttgtag tggttttcaa aaataattca
3301 acaaagaaac aatacaaaaa gtgggtagaa ttacctatca catttcccaa tcttgactat
3361 tcagaatgct gtttatttag tgatgaggat tagcacttga ttgaagattc ttttaaaata
3421 ctatcagtta aacatttaat atgattatga tt
//