LOCUS AK289251 3820 bp mRNA linear PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J100081E23, full insert sequence. ACCESSION AK289251 VERSION AK289251.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3820) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (04-SEP-2007) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2007) COMMENT This clone is one of the 1.9K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3820 /clone="J100081E23" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /note="Unmapped clone to TIGR pseudomolecule version 5.0" /note="in anaerobic condition for 3 days" /organism="Oryza sativa Japonica Group" /tissue_type="root of seedling" BASE COUNT 926 a 867 c 1097 g 930 t ORIGIN 1 ggggccattc gaaatcccca acaccagtag ccggccgcgg catgcagttc ctctcgctct 61 ccgccgccgc cgcctcctcg ccggcggccg ccgtcctccc accgaagcca ttcaaacccc 121 tctcctccgc ggcccccttc cgtcgcccct ccccgcctcc gccgcctccg tccccggtgc 181 cctcacccgc gccaccgcca ccgccgcatc gcccttctcc ttctcctccc ccgaaccccc 241 tctcctccaa gctatggctg tccagcaagc tctccccgcc gccccccgag acactagagc 301 agccagagcc ttctactact actactacta ctaccccgcc gccgccggaa ccggaggcgg 361 aggcggaggc gcggcggcag gaggaattcc ggcacaaggg gaaggtcttc gtcgggaacc 421 ttccactgtg ggccaggaag gcggagatcg ccgagttctt ccgccagttt gggcccctgg 481 agaaggtcga gctcgtgcgc ggccacgacg atcccgagcg caacgtgggc ttctgcttcc 541 tatactacgg aggcgacgac gcggacgccg cggcggagcg tgcggtggag gttgacgggg 601 ttgacttccg tgggaggtcg ctcaccgtga ggcttgacga cggcaggaaa gggagggcca 661 gggctgagca gcgggcgcgc tgggtgaacg acggccggag gcgcgagcca cggtcgccgt 721 ggcacgaggg cagggacgag gcgtgccgtg agttccgcag ggtggtggaa tcacggcccg 781 acaactggca ggccgtcgtc tctgcattcg agaggatacc caagccatca aggagagaat 841 tcggtctgat gattgtttat tatgccaagc gaggtgataa gcatcatgct cgtgcaacat 901 ttgagaacat gagagcaaga ggaatagagc ccaatgcatt tgtttttaca agccttgttc 961 acgcttatgc agttgctaga gatatgcgtg gagctctgtc ttgcgttgag gaaatgaaat 1021 ctgagggtct tgagctgaca attgttacct acagtatcct tatttcagga ttcgccaaaa 1081 ttaatgattc ccaatctgca gataacttgt tcaaagaggc taagaccaag cttagcagtc 1141 tcaatggaat catatatagt aacatcatac atgctcactg tcaatctggc aatatggaac 1201 gggctgaaga actggtgcgt gaaatggaag aggatgggat agatgctcct atagatgtat 1261 atcacagtat gatgcatgga tataccatca ttcagaacga aaataaatgt ctagttgtct 1321 ttgaacggct taaggagtgt ggctttaaac catcaataat ctcttatggg tgccttctta 1381 atttgtatgt caagataggt aaggttgcca aagcattatc tattagcaaa gaaatggagt 1441 cttgtggcat caaacataat aataaaacat actctatgct tatcaatgga tttatccatt 1501 tgcacgactt tgcaaatgct ttcgccatat ttgaggaaat gctaagatca ggtctacaac 1561 ctgatcgtgc catatacaat ttgcttatag aggcattttg taagatggga aacatggatc 1621 gtgctatttg cattttggaa aaaatgcaga aggaacgaat gcaaccatca aatagagcat 1681 tcaggcctat catagaggga tatgcagttg ctggtgatat gaaaagtgct ttggatactc 1741 ttgatctgat gcggcgaagt ggttgtgttc ccactgtaat gacttacaat gctctcattc 1801 acgggctagt tagaaagcac aaggtatttt tcaagtacat gctagtttct tcaaatctaa 1861 tcctgtcatg tggcatttac tttaaatttg tgtttatagg ttcaaagagc tgtctctgtg 1921 cttgataaga tgtccatcgc tggcattaca ccaaatgagc atacatacac aatcattatg 1981 agaggttatg ctgccagtgg agatattggg aaggcttttg aatacttcac caaaataaaa 2041 gagagtggtc taaaactcga tgtgtacatt tatgaaacat tgctcagagc ctgttgcaaa 2101 tcagggagga tgcagagtgc cttagcagtc actcgtgaga tgagcttcca aaagatacca 2161 aggaatacat ttatatataa tattttgatt gatggatggg ctcggagagg tgatgtttgg 2221 gaagcagagg acttgatgaa gcagatgaaa gaagatggtg tccctcctaa catccatact 2281 tatacctcct atataaatgc atgctgcaag gcaggagaca tgcagagagc agaaaaggtg 2341 attgaagaaa tggtagatgt tggactaaaa cctaatgtca agacatatac taccttgatt 2401 aaaggttggg caagagtgtc acttccagac agggcattga aatgcttgag gagatgaaac 2461 ttgctgggtt gaaacctgat gaggcttctt atcattgctt ggtgacttca cttctgtcaa 2521 gggcaactgt aatggaggga agtacctaca caggaatcat tagtgtctgt agagaaatgt 2581 ctgagaatga tttgactgtt gatcttcgca ctgctgttca ctggtctaga tggcttcaca 2641 agattgagag gactggaggg gcactaacag aagcgcttca gagaatattt cctcctgatt 2701 ggaattcatt agaattttta ggagagccat ccagttctat aagcatgggg gagtctgatg 2761 attacagtga ttcagatttt agcggtgatg aagatgagga tcataatatt gatgatagct 2821 gaaaaactct agattccaga gcctgttttt cttgttctgt gccctcactt tttgtccttt 2881 ggttctgcca gagtggatga ccgaacaagc aatgtctttg atcaaactgt gccctcacat 2941 tcagacacca gtggcttgtg gactatccaa gagcgtttgg aatcttatag tgcaataagc 3001 gtgagctggc tggcctctgc tgcgtttctt caagagcaac agtcagtaac agttctactg 3061 ggactgaaga cacaggctgt caatgcaaca gacgaagctt actcagttat gcgtgtagct 3121 gtacatatca atggctggca cagagaggcc aacaggagct ataaaatgat gttccgattg 3181 ctgttaatta cctggaaact gtactgtact gggcgagtga tgaaggtagg atggaagcgc 3241 caagctgctg tgaacaactg agggaaaatt cagaggcagc cggcggcggc gggatggagg 3301 ccgggcgcag gctagcggcg gcgggatgga ggtcgggcat gggctggcgg cgggcggccg 3361 gtggcggcgg gatgaaggcc gggcgcgggc tagggctggc ggcgggatgg cggccgagcg 3421 cgggttgagg ctggcggcgg ccggccggcg gttgcggccg agcgcgggct ggggctggcg 3481 gcggctggcc ggcggcgacg ggatggcggc cgggcgcggg ctggggctgg cggcggtccg 3541 gcgcgggtcg gcgggatgga ggccggtcgc cggcggcctc gccccccccc cccctcccct 3601 agatccggcc ggatctggag cggcgggatg ggtggccggc cggcggcggg atgggaggcc 3661 gcccggtgag tctttttttt gatttttttt atttgtggtt tggatgtttt tatctgtgat 3721 tgaatgtatg aatctgtgat gtggtgactg agtatgtgac tcgatgttgt caatgaacct 3781 atgaatcaat attgtgaata tatttgtgat gttgtgaacg //