LOCUS AK288906 5410 bp mRNA linear PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J090081A21, full insert sequence. ACCESSION AK288906 VERSION AK288906.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 5410) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (04-SEP-2007) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2007) COMMENT This clone is one of the 1.9K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..5410 /clone="J090081A21" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" BASE COUNT 1434 a 1037 c 977 g 1962 t ORIGIN 1 gagagcccta aaccctagaa ctccctcgcc ctcgcgtcgg cgccatggag gacgaggaga 61 tggagaagaa ggtgcagcag tacctgcagc ggaaggggtt ccgcctcacc gagctcgcgt 121 tgcaggagga gcgcaaccgc atctccacct cctccgtctc cgacgtcgcg ctcgccaggt 181 acacctgctc gccgccgggc cctttccaat ctcctctcct ctcctccgcc agctagctgg 241 gcgagccccc ctaactctgc cccgttgcga ctcggacctc tcggatcgag gaaacctagg 301 tagtggattt tgtgcaattt tgtccagctc gcttttgggc atcgaggtgc catatcacac 361 gtgcccgtga ttgggttgcg ggtgcgagtt tttccgcacg aggaaatagt ttgcggcatt 421 tttggagagc taaaagttgc ttgattgagg gttgggaatt gctttgtgga cgtagcaatg 481 agtaacacca attttgaacg atgaactctc tactggtaat tcccatgatg ataaggacat 541 ttcagggcag tatgcagctt atgcttgata atgggttaag tagtgtccgt agatggttct 601 actgcactta tatctagatt gtagttaata cctcaagtga ttaaactgat ttttgggtca 661 ctaagatgcc actttataac cttttttttc cagattacaa taattaaaac taaattttct 721 tgtcatatac tgagaaaact ttaatattat ggaagtatgc tttgttgata aatttagtca 781 tactattttc atatattgaa gaccagatat actagagaat atctctgttc ataagtaatg 841 tggtttgact gtatgtatta tgcgacgtca ccttttgttt tgattggaga gagtaattct 901 tccatctttt ctgtcttttt ttgtcagctt ccaatagttg tggcatccat tatttcacaa 961 taattctggc tatggtttat ttttcttata atcctaccga ctaatgcctt ttggttgcat 1021 tatcttctgc aatgataggt cggaaaatga tccggcaaga tactatgatg gttatagtaa 1081 actaagaaca tgggcataca gttctctcga tcagtacaag gtgtgctaca catacataga 1141 ttggacttca ccttttgatc ttgcagtaca ttttattgtg cttcacaatc aaacatcgtt 1201 agctaaaatt atgagtgatt tctaactgtc catttgttac atagtctttc tttaatgagt 1261 gatttcatgt tatttatgga taattacttt catgtttgca tgctagcttc agatggaaca 1321 cttttaggat tatattgtca taaaccaaag cttctagaat tatactttat tgcctgcatg 1381 ctaacttctg atggagtact ttcctagcaa ctctttgtgt tctctgcatg cattcacaat 1441 atgggccatt ttacaaagct aaagtacctg tccagattca taactaaaat ttgctatatt 1501 ttgggacaga gtactatatc ataaacactg aatatatttt tgcctccgac ggacatgtta 1561 atattagatt tcaatttgtg catatttctg ttcttaaatt tggttatatg tatactatgt 1621 ttctgaattt tcatcccttt tttgtagcat gaattactcc gtgtccttta cccagtgttt 1681 atccattcct tcatggatct agtggcagag ggacatacac aggaaggtat tgttagttgg 1741 cagatagatt agataaaccc tctttgtcat gtcatgtttt cttttagttt attctgggca 1801 atttctttcc ttgcgggccc tgcagctcgg tcctttttcc acacgttcca tgaagaccat 1861 gaactgatgc attctaggga tctccagaaa ctggaaggca ttctttctcc ttcacatttg 1921 gaggtcaaca cttttagttc tcttacattg taacattctg ttcttattga agatcttcat 1981 ttatttattt ggttgtatct tctcatgatt catacactgc gcttatcatt ctgcatgctg 2041 tatatttcag gaaatggaac tggccagatc tttaaggaaa aatcaattca gaattaagtt 2101 atgtgaggtt gtatccacat aataatttgc tgtatttcca tttatctctt tgaactttga 2161 ttctgagttg acccttttaa taatttaacc aatttatgaa gacaaaacgt tttgacagct 2221 taatatttgt tgttttgatg atatatccag gtgtttttgt ttttttacca cccttttcaa 2281 tttattggct tagcaatgtt agagaccgag cacaaaattg gcaccattta gtcagttagt 2341 cattacttac tgttactcat tgatcctgat aggcagctaa tgtcaaataa aaatatgatt 2401 attttgattt gtattgactg gaactagtgg accttttctt ttcttttcgt ttttgaacta 2461 tccttgttat aaggttacag caagatcaag tttaatgttc ttcctgagtt aaagttttca 2521 catttgatgt tcttccacca tttgagataa aaaagtttaa tgactttcct gagataaagc 2581 tttcatattt tgtctcccag atagctttta taatttcaaa tttcttgtct gctgcaatgt 2641 tatttaaaaa aaaacacatc tcgtgatcca attattgaat ttggttgcag tattcatatg 2701 agttactcct ccagtatctc cagaaaacac aagctcttgt ggttcttgga ataataaatg 2761 aacgcacaac ttttgacggt aacattcccc aatatcattc agattaatac cctaatttct 2821 gtcatgcatt ttctcgttta cacttctctt gtctactgtg ccacttatcc ctgttcaata 2881 ttggcagtat cccctggtca gccatcttta atctctgatg acacggatgt tgttgctcta 2941 gttggaacaa agaaggattt ggcaaaacaa ataaatctga aggaggtgca ttggggggta 3001 tggtctgcat cagtcttgtt gaccgctatt gcctgttcta tctatttgtt gatgatttgg 3061 attcaacaga tcgaaacaat ccacaccaat cagttatttg atgggattct atcattttca 3121 ttgaactttt aactatgctc aggcatttta tttttgtaaa attaaattct ggtatgcagt 3181 tgcttgaaga ttcagttgaa gagcgcatgg agaaaacact tttagaatca gataaaactg 3241 aagcagaaag caaggatgca gatgccgaag ataacaataa ggtactcttt atcgtatcga 3301 agatttgtta agtttactac ctatatcctc agccactgat agaagagcca tctatttctt 3361 tttgtttggg ccaggctatt agcagcttgt tgtcttatac ttccttaagc agtccataga 3421 aaatatgcat tgcttagctc cactctgcat gttcctgtgc ttcccagttt tgagtccaaa 3481 ttgatgtttc ttagtatttt agcttcatat ttttatcttc ttatttttgc tgcagagaaa 3541 atcttcggaa ggtggaaagc agggaggttc tgttaaaaag gtcaaaaaag ataagattgc 3601 aggagccaca gggaaaacca ataaatctga aacaagcata gtttcggtgg cacctcgtgt 3661 gaaaccagag cttacacttc cagtgatgta cacttaaatc ccttcatatc tctcttagga 3721 aaaatctagt ttggtcgttt gactttgata tctagcctgg tctctaacct aaagttttta 3781 aaattctcca tcctgtggat ttttcaggac ataataagtt attttaaatg gattcgtcat 3841 tccaacttag gacaatttta attttaattt tattttcttt tttttttgcc cgttgcgttt 3901 tcctatctgt gatattctga ttatgtttcc catttttatg ccagtccata ttaaccatgt 3961 tttgcttcaa ttcatgcacc tactattcca tttgttttct ttatgaattt ctaatccagg 4021 acaaggccag aacttattca aagctgtcct gtacatacac tatggaccaa catatattgt 4081 tcaacacaac atgcttcatt acacatgctg ctcaatgttt gttctgctag ttttttctct 4141 ctctaaaatt acctggttaa gccaactcaa atagtatgga aggtggaatt gtatccaccg 4201 gccaattttt attcgttaga ttgttgatga cgattatgtg gacctgactc tttgccagtt 4261 tgcttaactg cagtacattt caacacttca aaattacttt ttgtaagaca ctgaacaaag 4321 gcatgttgcc ttttttgctt ttcaagaaat caacaaaatt gaccatccaa tcctcttagt 4381 catgcaactt atttctaggt ggctcatcta tctacatttt tatctgggaa gaagtatttc 4441 aaccttgggt tgtaagaatc tgagatatat ttatcctttt atttcagtcc tgttgaagtc 4501 gagcagtcaa ttcttgagga tttgcgaaac cgtgcacagt tgaatagcct ggcattgcca 4561 tctgttagct tctacacatt ccttaatact cataatgggt aaatttcttt gtggcttaat 4621 atctgacact gccaatttgc atccttttct ctgatcatta tctgtggaca taggctaaat 4681 tgctcatcaa tttcacatga cggctctttg gttgtgggtg gattctctga ctcatcagtg 4741 aaggctagtc ctttttgtcc ctttttggta ctttgttctt atatatgtga tttctgtatt 4801 atttttgtaa caataaaact ttgtgttcac caggtttggg atatgtcaaa gattggccaa 4861 ccgccgaaaa catgttagtt gttcttcact acttaatgtt gtttgattcc accttgtgtt 4921 atgctgaaat acttccatta tgtgctgaaa tgttttgata attgccttaa gtttacagaa 4981 caacatagtt ttattcattt catttagttg atgttacaac ttacaagtac tgaaatattt 5041 tttccatatt aatgcttgtg tggatctgtc attcaaaaat gtcttctcga cctaccgaca 5101 tataatgatt ttttgtcata ctagtgcact aagttatgac atagcagtat acttgattcc 5161 ataacctgtt caggaatcag gactcttgaa tagtcttagc atgtcaatta tcctaagtcc 5221 taacatgaga gtgttttgtt ttatataatg gtggtatttg ctgattgaag aaactttaat 5281 tttcagctag tccacaagga gagaatggac tttcccaggg tgagcgcaca tcagcatcag 5341 attatggaaa aagaccttat acattattcc aaggtcattc tggaccagtt tattccgctg 5401 catttggccc //