LOCUS AK243615 1636 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100085N23, full insert
sequence.
ACCESSION AK243615
VERSION AK243615.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1636)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1636
/clone="J100085N23"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="in anaerobic condition for 3 days"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 47..1534
/db_xref="Osa1:LOC_Os09g24530"
/note="(Rice Genome Annotation Project) ribulose-1,5
bisphosphate carboxylase/oxygenase large subunit
N-methyltransferase, chloroplast precursor, putative,
expressed"
/note="mapping to R09-TIGRv4S1-000374R (Chr.9: short
arm=14606517, long arm=14608861, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH01674.1"
/translation="MAAAIHHHHLLPPRLLSVHPQPPRLRLRRPLPRRAAASGAAAGT
SSSTAAAPPPTDAALQEFRRWVSSHGADAGAGAAAPAAVPEGGLGLVAARDLPRGEVL
AEVPKKLWLDADAVAASDLGGAVGRGGLRPWVAVALLLLREAARGAGSPWAPYLAILP
RQTDSTIFWSEEELLEIQGTQLLSTTMGVKEYVQSEFESVEAEIISENRELFPGTVTF
NDFLWAFGILRSRVFAELRGDKLALIPFADLVNHSDDITSKESSWEIKGKGLFGRDVV
FSLRTPVNVKSGEQIYIQYDLDKSNAELALDYGFTESNSSRDAYTLTLEISESDPFYD
DKLDIAELNGMGETAYFDIVLGESLPPQMLPYLRLLCLGGTDAFLLEALFRNAVWGHL
ELPVSQDNEEAICQVIRNACKSALGAYHTTIEEDEELLGSENLQPRLQIAVEVRAGEK
KVLQQIDDIFKQREEELDGLEYYQERRLKDIGLVGDNGEIIFWES"
BASE COUNT 369 a 444 c 457 g 366 t
ORIGIN
1 gctctaatcc gcaaccccgc tctcgtccgc cttctggctg cgcgccatgg ctgctgccat
61 ccaccaccac cacctcctcc ctcctcgcct cctctccgtc cacccgcagc ctccccgcct
121 ccgcctccgg cgcccgctcc cccgccgcgc ggccgcgtcc ggcgcagcgg ccgggacgtc
181 gtcgtcgacc gcggccgcgc cgccgcccac ggacgccgcg ctgcaggagt tcaggcgctg
241 ggtgtcgtcc cacggcgcgg acgcgggggc cggcgcggcg gcgcccgccg ccgtccccga
301 gggtggcctc ggcctcgtcg cggcgcggga cctgccccgc ggggaggtgc tcgccgaggt
361 gcccaagaag ctctggctgg acgccgacgc cgtcgcggcc tccgacctcg gcggcgccgt
421 cggccgcggg gggctcaggc cctgggtcgc cgtcgcgctg cttctcctcc gcgaggccgc
481 ccgcggcgcc ggctcgccgt gggcgcccta cctcgccatc ctcccgcgcc agaccgactc
541 caccatcttc tggtcagaag aagagctctt ggagatacaa ggaacacagt tactgagcac
601 aacaatgggt gtgaaggagt atgtgcagag tgaatttgag agtgttgaag ctgagatcat
661 aagcgagaac agggagctct ttcctggtac tgtaacattc aatgatttcc tatgggcatt
721 cggcatactc agatcacggg tgtttgcgga gctccgtgga gataagcttg ctctcatacc
781 atttgctgat cttgtaaatc acagcgatga tataacctca aaagagtcca gttgggagat
841 caaaggaaag ggtctttttg gtagggatgt tgtgttttct ttgcgaacac cggtgaatgt
901 taaatctgga gaacagatat atattcagta tgatttggac aagagcaacg cagaattagc
961 gcttgattat ggtttcaccg aatcaaattc atcaagggat gcatatactc tgaccttgga
1021 gatatctgaa tctgatccat tttatgatga caagcttgac attgcagagc taaatgggat
1081 gggggagact gcatactttg atattgtcct tggtgaatct cttcctcctc aaatgctacc
1141 ttacctgcga ttactctgcc ttgggggaac agatgcattt ctcttggaag cactcttcag
1201 aaatgctgtt tggggccacc ttgaactgcc agtgagtcaa gataatgaag aagcgatatg
1261 tcaggtcatc cgaaatgcct gcaaatctgc ccttggtgct taccacacta ccatagaaga
1321 ggacgaagaa ctgttgggaa gtgaaaatct tcagccaagg cttcaaattg ccgttgaagt
1381 cagggccggt gagaagaaag tgctacagca gattgatgac attttcaagc agagggagga
1441 ggaactggat ggcctagagt actaccaaga acggagactc aaggatattg gtttagttgg
1501 cgacaatggt gaaattatct tctgggaatc ctagagactt tttattcatt ttctgagggt
1561 agagaaggtt ttgtaaaatg ccactgtgca atagcaaatt aatgaaagaa aaagagaaaa
1621 aaaatgatat tctagc
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