LOCUS AK243456 2710 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100070J24, full insert
sequence.
ACCESSION AK243456
VERSION AK243456.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2710)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2710
/clone="J100070J24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="6ppm CdCl2 for 3 days"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 161..2464
/db_xref="Osa1:LOC_Os10g41310"
/note="(Rice Genome Annotation Project) bZIP-like
protein, putative, expressed"
/note="mapping to R10-TIGRv4S1-000707R (Chr.10: short
arm=21868646, long arm=21872646, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH01606.1"
/translation="MGCTASKVEQEDTVRRCKERRRHMKEAVASRQQLASAHADYLRS
LRLTAAALSRFAQGHPSLAVSHHTAPVLLTTAAPALAPTPTPPPPSSTASSSLPPPTP
LLPKHQQAPPPPPPTQSHQPPPPVAVRAPRGGPRRLKVPHILSDSSVASPARSSFRKP
VVGTPSSSSAWDWENFYPPSPPDSEFFDRRKADLEEANRLRELEEEEKARGYLHPHHL
KEEDEVDDDDDEREEEMHCGGWEDDDDHYASTTTSETRSEEGEMGNRSECGFAARSEY
GGTAPSEYAAAPLPLPLRRRDERSEAGDSSSTVTAAAEMRMVIRHRTLAEIVAAIEEY
FVKAAEAGNGVSELLEASRAQLDRNFRQLKKTVYHSNSLLSSLSSTWTSKPPLAVRYK
LDTNALEMESMEGKSHGSTLERLLAWEKKLYQEVKARESVKIEHEKKLSTLQSLEYRG
RDSTKLDKTKASINKLQSLIIVTSQAATTTSSAIVRVRDNELAPQLVELCFALLSMWR
SMNHFHEIQNEIVQQVRGLVDNSMAESTSDLHRLATRDLEAAVSAWHSNFNRLIKYQR
DYIRALYGWLKLTLFQVDSNIPQEAYTSLISRELTTFCDEWKQALDRLPDASASEAIK
SFVNVVHVIYTKQAEEMKIKKRTETYSKELEKKTNSLRAIEKKYYQSYSMVGLGLPGS
GRDGIESHSFDARDPLAEKKTEIAQCRRKVEDEMTRHAKAVEVTRSMTLNNIQTGLPG
MFQAIAGFSGTVVEALDVVCRRAGSVR"
BASE COUNT 596 a 768 c 836 g 510 t
ORIGIN
1 gagctgcagc tcactcctcc cactcgagta gagcagccaa ctcctctctc tctctctcgc
61 cgcagcgagg agggagacga cggcgaatcg gagagggcgt tagatcgaat cggagaggag
121 gggaagcgcg cgcgcgcgct cgcgtcgcgg gtggggggcg atggggtgca cggcgtcgaa
181 ggtggagcag gaggacacgg tgcggcggtg caaggagcgg cggcggcaca tgaaggaggc
241 ggtggcgtcg cggcagcagc tggcgtcggc gcacgccgac tacctccgct ccctccgcct
301 caccgccgcc gcgctctccc gcttcgcgca gggccacccg tcgctcgccg tgtcgcacca
361 caccgcgccg gtgctcctca ccacggccgc gcccgcgctg gcgccgacgc cgacgccgcc
421 gccgccgtca tccacggcgt cgtcctcgct cccgccaccg acgccgctgc tccccaagca
481 ccagcaggcg ccgccgccgc caccgcccac gcagtcgcat cagccgcctc ctcccgtggc
541 ggtgagggct ccccgcggcg ggccgcgtcg cctcaaggtg ccgcacatcc tgtccgactc
601 cagcgtcgcc agcccggcgc ggtcgtcgtt ccggaagccg gtggtgggga cgccgtcgtc
661 gtcgtcggcg tgggactggg agaacttcta cccgccgtcg ccgccggact ccgagttctt
721 cgaccgccgc aaggccgacc tcgaggaggc caaccgcctc cgcgagctcg aggaggagga
781 gaaggcccgg ggctacctcc acccccacca cctcaaggaa gaggacgagg tcgacgacga
841 cgacgacgag agggaggagg agatgcattg cggcggatgg gaggacgacg acgaccacta
901 cgcgtcgacg accacctcgg agaccagatc ggaggagggg gaaatgggga acagatcgga
961 gtgcggcttc gcggccagat cggagtacgg cggcacggcg ccgtcggagt acgccgccgc
1021 gccgctgcca ctgccgctga ggaggaggga cgagaggtcg gaggccgggg actcctcctc
1081 cacggtcacg gcggccgccg agatgcggat ggtgatccgc caccgcacgc tggcggagat
1141 cgtggccgcc atcgaggagt actttgtcaa ggcggccgag gccggcaatg gcgtctcgga
1201 gctcctggag gctagccgcg cgcagctgga ccgcaacttc cggcagctca aaaagacggt
1261 gtaccactcg aacagcttgc tatcgtcgct gtcgtcgaca tggacttcaa agccaccatt
1321 ggctgttcgc tacaagttgg acaccaatgc gttagagatg gagtcaatgg aagggaagag
1381 ccatgggtcg acactggagc gtcttttggc ctgggagaaa aagctctatc aggaggtcaa
1441 ggctagagag agcgttaaga ttgagcacga gaagaagctt tctactctgc agagcctgga
1501 gtacagaggg agggatagta ccaagctgga taagaccaag gcctccataa acaagctgca
1561 atcgttgatc atcgtgactt cacaggccgc aactaccaca tcctcagcca ttgtcagggt
1621 gcgtgacaat gagcttgcac cacagcttgt cgagctttgc ttcgcgctgt tgagcatgtg
1681 gagatcaatg aaccatttcc atgagatcca gaatgaaatt gttcagcaag tccgtggtct
1741 ggtagacaat tccatggctg agtcaacatc tgatcttcac cggcttgcca cccgtgatct
1801 tgaggctgct gtctcagcat ggcactcaaa cttcaaccgt ctcatcaagt atcaacgtga
1861 ttatatacgt gccctctatg gctggctgaa gctcacactc ttccaagtgg acagtaatat
1921 cccacaagag gcttacacct cgctgatctc tcgtgaactc accaccttct gtgatgagtg
1981 gaagcaagca ctggaccggc ttccagatgc ttcggcttcg gaggctatca agagcttcgt
2041 gaatgttgtc catgtcatct acactaagca ggcagaggag atgaaaataa aaaagcggac
2101 agagacatat tcaaaggagc tggaaaagaa gaccaactca cttcgagcca ttgagaagaa
2161 gtactaccaa tcctattcaa tggttggcct tggccttcct ggcagtgggc gcgatggcat
2221 tgaaagccat tcgttcgatg cccgcgatcc tcttgcagag aagaaaaccg agattgccca
2281 atgtcggcgg aaggtggagg acgaaatgac aaggcatgct aaggcagtgg aggtaactag
2341 atcaatgaca ctgaacaaca tccaaacagg cctgccagga atgttccaag ccatagctgg
2401 tttctcagga acagttgttg aagcccttga cgttgtctgc aggcgagctg gatcggtgcg
2461 gtagaagctt gcgctgccag actttccaag aaaccgttcg ttaagtcttt ttgggtggtt
2521 cagtaattta tatagggaaa atgcaatata tatagctaaa attagtgatg agaatatggg
2581 ggagaaggct cccttgatgt tttgccttgt tgggagttgg tcattttggt tgtagataaa
2641 tgattttact caggattgtt gatgttcttt tgcttgtcct gtgaagtgca agggaagatt
2701 acattgtact
//