LOCUS AK243286 1908 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J100052F22, full insert sequence. ACCESSION AK243286 VERSION AK243286.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1908) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2006) COMMENT This clone is one of the 2.6K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1908 /clone="J100052F22" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /note="6ppm CdCl2 for 3 days" /organism="Oryza sativa Japonica Group" /tissue_type="root of seedling" CDS 710..1690 /db_xref="Osa1:LOC_Os11g38050" /db_xref="Osa1:LOC_Os11g38060" /note="(Rice Genome Annotation Project) hydrolase, acting on ester bonds, putative, expressed" /note="mapping to R11-TIGRv4S1-000671R (Chr.11: short arm=22068656, long arm=22075440, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAH01521.1" /translation="MRQLKYVGNFHPYDTAFKRDCKAGKLPNYVVIEQRYFDLKLLPG NDDHPSHDVAHGQRLVKDVYEALRSSPQWHEILFVITYDEHGGFFDHVPTPVAGVPSP DGIVSAAPVSFAFDRLGVRVPTLLVSPWIEPGTVVHDPASCGGAPEPTSQFEHSSIPA TVKRIFGLKEFLTRRDAWAGTFDTVLTRAAPREDCPATLPEPPRLRAAEAEEHREVSE FQAELVQLGAALNGDHDGEGYDPEVFVRGMTVAGAAQYCRDAFDRFREECHRCRDGGM DGSHVPMLQPASASASSSAPAADPPATAPAPATPSALSKLCGCFPCFNAS" BASE COUNT 325 a 635 c 601 g 347 t ORIGIN 1 ggccactgag ctctagctaa taagccatcc tcgatcgttt atcttcctct tccctcttcc 61 aatcccagcc tcgacgccag ccatggcggg caagatcaag acggtggtgg tgctggtcca 121 ggagaaccgc tccttcgacc acatgctggg gtggatgaag tcgttgaacc cggagatcga 181 cggcgtgacg ggcgccgagt tcaaccgcgc caccgccggc gacccctcct ccccggcgat 241 ccacttcggc gacggctccg ggtacgtgga ccccgacccg ggccactcgt tccaggccat 301 ctacgagcag gtgtacggcg acgcctacac gtgggggacc acctcgccgg cgacgaagcc 361 gggggtgccc tcgccgccga tgagcgggtt cgcgcaggag gcggagaagg agcgcgccgg 421 catgtcgagc acggtgatga acgggttccg gccggagaag gtgccggtgt accgggagct 481 ggtgcgggag ttcgccgtgt gcgaccggtg gttcgcgtcg gtgccgacgt cgacgcagcc 541 gaaccggatg ttcgtccact cggcgacgtc gcacggcctc gtcagcaacg acggcaagca 601 gctccgcgcc ggcctgccgc agcgcaccat cttcgacgcc ctccacgacg ccggccactc 661 cttcggcgtc tactaccagt tccctccctc cgtgctcttc tacaggaaca tgaggcaact 721 caagtacgtg ggcaacttcc acccctacga caccgccttc aagcgcgact gcaaggccgg 781 caagctccca aactacgtcg tcatcgagca gcgctacttc gacctcaagc tcctcccggg 841 caacgacgac cacccttccc acgacgtcgc ccatggccag cgcctcgtca aggacgtcta 901 cgaggcgctc cgctcgagcc cccagtggca cgagatcctc ttcgtcatca cctacgacga 961 gcacggcggc ttcttcgacc acgtccccac cccggtcgcc ggcgtccctt cccccgacgg 1021 catcgtcagc gccgcccccg tgtcgttcgc cttcgaccgc ctcggcgtcc gcgtcccgac 1081 gctgctcgtc tcgccgtgga tcgagccggg caccgtggtg cacgacccgg cgtcgtgcgg 1141 cggcgcgccg gagccgacgt cgcagttcga gcactcgtcg atcccggcga cggtgaagag 1201 gatatttggg ttgaaggagt tcctgacgag gcgcgacgcg tgggcgggca cgttcgacac 1261 ggtgctgacg cgggcggcgc cgagggagga ctgccccgcc acgctgccgg agccgccgcg 1321 gctgcgggcg gcggaggcgg aggagcaccg ggaggtgtcg gagttccagg ccgagctggt 1381 gcagctcggc gccgcgctga acggcgacca cgacggggaa gggtacgacc ccgaggtgtt 1441 cgtccgcggg atgaccgtcg ccggcgccgc ccagtactgc cgcgacgcgt tcgaccggtt 1501 ccgggaggag tgccaccggt gccgcgacgg cggcatggac gggtcccacg tcccgatgct 1561 gcagccggct tcggcttctg cttcgtcttc cgctccggcg gctgacccgc cggccacggc 1621 gccggcaccg gcgacgccgt cggctctgtc caagctgtgc ggttgcttcc catgcttcaa 1681 tgcgtcgtag gatcgagagc atccatgaat tgcaaatgca actttgtaag tgtttgtttc 1741 atacttttca ttactccaga agatgattga ttaatgattg ctgttgattc attaaggaaa 1801 gattgggttt aattaaactt gtaattatga tcatgttgat gttgtttgta attgttacta 1861 tttgtttgag caataaaagt gactgctaat aaagtgtgaa aaaaaggc //